Wall clock time and date at job start Tue Mar 31 2020 18:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.42906 * 109.47321 * 239.99826 * 2 1 3 5 5 C 1.34914 * 116.99911 * 90.00102 * 4 2 1 6 6 O 1.21634 * 120.00137 * 359.97438 * 5 4 2 7 7 C 1.46135 * 119.99980 * 180.02562 * 5 4 2 8 8 C 1.35015 * 120.00202 * 179.97438 * 7 5 4 9 9 C 1.47036 * 120.00210 * 179.97438 * 8 7 5 10 10 C 1.39917 * 120.19375 * 359.72123 * 9 8 7 11 11 C 1.37801 * 119.85085 * 179.67690 * 10 9 8 12 12 C 1.38487 * 120.24294 * 0.62705 * 11 10 9 13 13 C 1.38274 * 120.39252 * 359.67526 * 12 11 10 14 14 C 1.38231 * 120.14058 * 359.97438 * 13 12 11 15 15 F 1.35101 * 120.12119 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 17 17 O 1.21283 * 120.00236 * 114.99716 * 16 2 1 18 18 N 1.34774 * 119.99861 * 294.99892 * 16 2 1 19 19 C 1.46507 * 120.00108 * 359.97438 * 18 16 2 20 20 C 1.46496 * 120.00367 * 180.02562 * 18 16 2 21 21 C 1.50695 * 109.47370 * 89.99805 * 20 18 16 22 22 H 1.08005 * 120.00163 * 0.02562 * 21 20 18 23 23 C 1.37882 * 120.00369 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99460 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00346 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47115 * 59.99425 * 25 23 21 27 27 H 1.48496 * 109.47344 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47009 * 299.99602 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.00144 * 359.97438 * 7 5 4 33 33 H 1.08002 * 119.99324 * 359.97438 * 8 7 5 34 34 H 1.08002 * 120.07249 * 359.97438 * 10 9 8 35 35 H 1.08003 * 119.87819 * 180.31752 * 11 10 9 36 36 H 1.08004 * 119.80948 * 179.69583 * 12 11 10 37 37 H 1.07999 * 119.92856 * 180.02562 * 13 12 11 38 38 H 1.09002 * 109.47123 * 89.99538 * 19 18 16 39 39 H 1.08997 * 109.47369 * 209.99929 * 19 18 16 40 40 H 1.09002 * 109.47042 * 330.00239 * 19 18 16 41 41 H 1.09001 * 109.47223 * 209.99860 * 20 18 16 42 42 H 1.09007 * 109.46674 * 329.99720 * 20 18 16 43 43 H 0.96998 * 120.00028 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2106 0.0786 -2.2679 6 8 1.9893 1.2743 -2.2373 7 6 2.6965 -0.5432 -3.4979 8 6 2.9004 0.2095 -4.6000 9 6 3.3899 -0.4160 -5.8374 10 6 3.6513 -1.7900 -5.8755 11 6 4.1035 -2.3701 -7.0408 12 6 4.3124 -1.5960 -8.1700 13 6 4.0633 -0.2361 -8.1417 14 6 3.6025 0.3612 -6.9834 15 9 3.3597 1.6899 -6.9562 16 6 2.0324 -0.7105 1.2305 17 8 2.6530 -1.7468 1.1215 18 7 1.7919 -0.1942 2.4520 19 6 1.0427 1.0579 2.5837 20 6 2.2807 -0.8845 3.6482 21 6 3.6620 -0.3861 3.9866 22 1 4.1291 0.3696 3.3723 23 6 4.3298 -0.8948 5.0804 24 7 3.7609 -1.8147 5.8286 25 14 6.0417 -0.2766 5.5002 26 1 5.9907 1.1848 5.7588 27 1 6.5372 -0.9763 6.7127 28 1 6.9581 -0.5464 4.3632 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.8926 -1.6048 -3.5253 33 1 2.7039 1.2712 -4.5727 34 1 3.4944 -2.3954 -4.9950 35 1 4.3005 -3.4316 -7.0722 36 1 4.6716 -2.0571 -9.0781 37 1 4.2284 0.3604 -9.0268 38 1 -0.0215 0.8374 2.6677 39 1 1.3755 1.5884 3.4758 40 1 1.2166 1.6794 1.7052 41 1 1.6082 -0.6857 4.4827 42 1 2.3177 -1.9573 3.4589 43 1 4.2305 -2.1723 6.5983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007854561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:46 Heat of formation + Delta-G solvation = -135.489622 kcal Electronic energy + Delta-G solvation = -27466.849245 eV Core-core repulsion = 23198.767183 eV Total energy + Delta-G solvation = -4268.082061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.03944 -42.04089 -40.59240 -39.98674 -37.90082 -36.72138 -35.41215 -34.90653 -33.04407 -31.60567 -30.89791 -29.60638 -27.69629 -26.58082 -25.76013 -24.41099 -23.67743 -22.66858 -20.75961 -20.42343 -19.49870 -18.72956 -18.53582 -18.19595 -17.63504 -17.32778 -17.22797 -16.78242 -16.73189 -16.61930 -16.35298 -15.82406 -15.24942 -14.95446 -14.85271 -14.73986 -14.36207 -14.21231 -14.15154 -13.75211 -13.60123 -13.56038 -13.44281 -13.33536 -13.06765 -12.82654 -12.64685 -12.53657 -12.51667 -12.21658 -12.10270 -11.92855 -11.83584 -11.74297 -11.63140 -10.65940 -10.63413 -9.91845 -9.53802 -9.43468 -8.24860 -6.39474 -0.82749 0.18173 0.61852 1.28383 1.35936 1.39767 1.47240 1.59524 1.80598 2.30628 2.43133 2.65645 3.04889 3.11243 3.37150 3.38174 3.61892 3.67711 3.82975 3.86641 3.90588 4.11633 4.28007 4.29970 4.31475 4.49102 4.59827 4.65717 4.73481 4.79296 4.85199 4.93331 4.99862 5.05670 5.07971 5.14673 5.18247 5.26406 5.35366 5.40802 5.49493 5.76509 5.83517 6.02130 6.48258 6.61909 6.68614 7.18352 7.34163 8.82268 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.002172 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.587899 B =12885.760413 C =13620.108044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 H 0.112 0.888 4 O -0.334 6.334 5 C 0.494 3.506 6 O -0.534 6.534 7 C -0.193 4.193 8 C 0.005 3.995 9 C -0.132 4.132 10 C -0.074 4.074 11 C -0.130 4.130 12 C -0.066 4.066 13 C -0.160 4.160 14 C 0.102 3.898 15 F -0.145 7.145 16 C 0.500 3.500 17 O -0.578 6.578 18 N -0.599 5.599 19 C 0.069 3.931 20 C 0.260 3.740 21 C -0.548 4.548 22 H 0.050 0.950 23 C 0.010 3.990 24 N -0.925 5.925 25 Si 0.967 3.033 26 H -0.261 1.261 27 H -0.275 1.275 28 H -0.279 1.279 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.166 0.834 33 H 0.131 0.869 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.158 0.842 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.034 0.966 42 H 0.002 0.998 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 3.144 -29.035 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.129 0.871 4 O -0.249 6.249 5 C 0.343 3.657 6 O -0.426 6.426 7 C -0.211 4.211 8 C -0.014 4.014 9 C -0.133 4.133 10 C -0.092 4.092 11 C -0.148 4.148 12 C -0.084 4.084 13 C -0.179 4.179 14 C 0.083 3.917 15 F -0.123 7.123 16 C 0.287 3.713 17 O -0.458 6.458 18 N -0.331 5.331 19 C -0.073 4.073 20 C 0.139 3.861 21 C -0.587 4.587 22 H 0.069 0.931 23 C -0.190 4.190 24 N -0.564 5.564 25 Si 0.791 3.209 26 H -0.185 1.185 27 H -0.200 1.200 28 H -0.205 1.205 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.088 0.912 32 H 0.183 0.817 33 H 0.149 0.851 34 H 0.170 0.830 35 H 0.180 0.820 36 H 0.187 0.813 37 H 0.176 0.824 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.924 2.907 -28.845 29.256 hybrid contribution 0.792 0.613 0.907 1.351 sum -3.132 3.520 -27.939 28.333 Atomic orbital electron populations 1.22314 0.89338 1.04457 1.05822 1.22164 0.97929 0.96848 0.81263 0.87077 1.86297 1.76993 1.41804 1.19854 1.21782 0.74158 0.85007 0.84760 1.90837 1.50119 1.16756 1.84859 1.22155 1.07328 1.02690 0.88960 1.22297 0.88820 0.99916 0.90371 1.18989 1.06902 0.95185 0.92248 1.21709 0.95227 0.92050 1.00235 1.21609 0.98884 1.02298 0.91978 1.21674 0.94797 0.91996 0.99925 1.21448 1.02143 0.97171 0.97133 1.18220 1.00901 0.77164 0.95424 1.91490 1.91968 1.31785 1.97087 1.20649 0.80111 0.85427 0.85160 1.90657 1.42262 1.26088 1.86752 1.48054 1.54059 1.25332 1.05670 1.22191 0.96546 0.84534 1.04033 1.18852 0.93860 0.91839 0.81508 1.21652 1.02251 1.23180 1.11582 0.93130 1.25833 1.02362 0.94935 0.95830 1.70028 1.39873 1.28862 1.17644 0.85486 0.78850 0.79092 0.77503 1.18528 1.20034 1.20497 0.89528 0.87419 0.91231 0.81712 0.85110 0.83035 0.81986 0.81306 0.82425 0.89634 0.90625 0.89615 0.94780 0.97997 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.26 71.98 0.67 -3.42 16 2 C 0.08 2.61 2.12 29.85 0.06 2.68 16 3 H 0.11 3.61 6.10 -2.39 -0.01 3.59 16 4 O -0.33 -11.73 9.31 -51.85 -0.48 -12.21 16 5 C 0.49 15.10 7.83 69.87 0.55 15.65 16 6 O -0.53 -17.75 15.47 19.40 0.30 -17.45 16 7 C -0.19 -4.43 9.53 23.58 0.22 -4.21 16 8 C 0.00 0.10 9.26 23.84 0.22 0.32 16 9 C -0.13 -2.29 5.87 -20.11 -0.12 -2.41 16 10 C -0.07 -0.95 9.41 22.57 0.21 -0.73 16 11 C -0.13 -1.06 10.02 22.23 0.22 -0.83 16 12 C -0.07 -0.45 10.04 22.34 0.22 -0.23 16 13 C -0.16 -1.71 10.01 22.28 0.22 -1.49 16 14 C 0.10 1.71 7.30 22.72 0.17 1.87 16 15 F -0.14 -2.90 16.62 44.97 0.75 -2.15 16 16 C 0.50 22.34 7.10 87.66 0.62 22.96 16 17 O -0.58 -31.88 16.09 15.95 0.26 -31.62 16 18 N -0.60 -26.06 2.86 -851.11 -2.43 -28.50 16 19 C 0.07 2.07 8.92 127.77 1.14 3.21 16 20 C 0.26 14.15 5.16 85.63 0.44 14.59 16 21 C -0.55 -32.06 9.39 25.60 0.24 -31.82 16 22 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 23 C 0.01 0.57 5.46 84.66 0.46 1.04 16 24 N -0.92 -55.95 13.29 21.45 0.28 -55.67 16 25 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 26 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 30 H 0.11 2.25 5.12 -2.39 -0.01 2.24 16 31 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.17 3.00 6.08 -2.91 -0.02 2.99 16 33 H 0.13 3.00 7.20 -2.91 -0.02 2.98 16 34 H 0.15 1.56 6.17 -2.91 -0.02 1.54 16 35 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.17 0.05 8.06 -2.91 -0.02 0.02 16 37 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 38 H 0.09 2.01 7.02 -2.39 -0.02 1.99 16 39 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 40 H 0.09 2.13 6.08 -2.39 -0.01 2.11 16 41 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 42 H 0.00 0.12 7.42 -2.38 -0.02 0.10 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -81.11 375.06 7.31 -73.80 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.05 Total: 9.23 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 5.56 Total: 17.17 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -2.15 Total: -84.16 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: 0.07 Total: -61.29 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.75 Total: -2.15 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -81.11 7.31 -73.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007854561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.689 kcal (2) G-P(sol) polarization free energy of solvation -81.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds