Wall clock time and date at job start Tue Mar 31 2020 18:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47052 * 2 1 4 4 O 1.42899 * 109.47392 * 120.00354 * 2 1 3 5 5 C 1.34917 * 116.99880 * 270.00020 * 4 2 1 6 6 O 1.21636 * 119.99814 * 359.97438 * 5 4 2 7 7 C 1.46136 * 119.99887 * 180.02562 * 5 4 2 8 8 C 1.35009 * 120.00198 * 180.02562 * 7 5 4 9 9 C 1.47044 * 120.00174 * 179.97438 * 8 7 5 10 10 C 1.39906 * 120.19114 * 359.72650 * 9 8 7 11 11 C 1.37808 * 119.84935 * 179.69480 * 10 9 8 12 12 C 1.38492 * 120.23759 * 0.60313 * 11 10 9 13 13 C 1.38267 * 120.39456 * 359.67486 * 12 11 10 14 14 C 1.38227 * 120.14312 * 0.02562 * 13 12 11 15 15 F 1.35102 * 120.12189 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46892 * 240.00653 * 2 1 3 17 17 O 1.21281 * 119.99699 * 244.99452 * 16 2 1 18 18 N 1.34773 * 120.00080 * 64.99942 * 16 2 1 19 19 C 1.46499 * 120.00036 * 359.72107 * 18 16 2 20 20 C 1.46506 * 119.99969 * 180.02562 * 18 16 2 21 21 C 1.50703 * 109.46877 * 269.72057 * 20 18 16 22 22 H 1.08005 * 119.99817 * 0.02562 * 21 20 18 23 23 C 1.37871 * 120.00081 * 179.97438 * 21 20 18 24 24 N 1.31520 * 119.99848 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00321 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46938 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47198 * 120.00527 * 25 23 21 28 28 H 1.48498 * 109.47360 * 240.00281 * 25 23 21 29 29 H 1.08996 * 109.47639 * 59.99919 * 1 2 3 30 30 H 1.09007 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46967 * 299.99477 * 1 2 3 32 32 H 1.07998 * 119.99687 * 0.02562 * 7 5 4 33 33 H 1.08004 * 119.99586 * 359.97438 * 8 7 5 34 34 H 1.08007 * 120.08069 * 359.97438 * 10 9 8 35 35 H 1.08003 * 119.87811 * 180.27031 * 11 10 9 36 36 H 1.08002 * 119.80119 * 179.69428 * 12 11 10 37 37 H 1.08001 * 119.92646 * 180.02562 * 13 12 11 38 38 H 1.09003 * 109.47269 * 270.27384 * 19 18 16 39 39 H 1.08994 * 109.47173 * 30.28203 * 19 18 16 40 40 H 1.09005 * 109.47077 * 150.28374 * 19 18 16 41 41 H 1.09000 * 109.46803 * 29.71536 * 20 18 16 42 42 H 1.09000 * 109.47214 * 149.72329 * 20 18 16 43 43 H 0.96998 * 119.99944 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2105 0.0786 2.2679 6 8 1.9901 1.2744 2.2369 7 6 2.6976 -0.5431 3.4975 8 6 2.9014 0.2096 4.5996 9 6 3.3910 -0.4161 5.8370 10 6 3.6414 -1.7919 5.8784 11 6 4.1061 -2.3699 7.0399 12 6 4.3140 -1.5959 8.1693 13 6 4.0643 -0.2362 8.1413 14 6 3.6037 0.3612 6.9830 15 9 3.3594 1.6897 6.9563 16 6 2.0323 -0.7103 -1.2306 17 8 2.6530 -1.7465 -1.1217 18 7 1.7918 -0.1940 -2.4521 19 6 1.0369 1.0546 -2.5839 20 6 2.2796 -0.8848 -3.6484 21 6 3.6585 -0.3825 -3.9912 22 1 4.1249 0.3751 -3.3790 23 6 4.3250 -0.8910 -5.0859 24 7 3.7571 -1.8140 -5.8311 25 14 6.0338 -0.2680 -5.5113 26 1 6.4449 0.7625 -4.5242 27 1 6.9960 -1.3986 -5.4758 28 1 6.0193 0.3270 -6.8718 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.8945 -1.6046 3.5245 33 1 2.7049 1.2712 4.5724 34 1 3.4752 -2.3990 5.0007 35 1 4.3037 -3.4313 7.0710 36 1 4.6736 -2.0570 9.0773 37 1 4.2294 0.3603 9.0264 38 1 -0.0265 0.8294 -2.6655 39 1 1.2100 1.6782 -1.7068 40 1 1.3654 1.5852 -3.4776 41 1 2.3206 -1.9571 -3.4573 42 1 1.6043 -0.6896 -4.4814 43 1 4.2258 -2.1714 -6.6014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007854566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:49 Heat of formation + Delta-G solvation = -135.573618 kcal Electronic energy + Delta-G solvation = -27465.644054 eV Core-core repulsion = 23197.558350 eV Total energy + Delta-G solvation = -4268.085703 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.03911 -42.04107 -40.59305 -39.98677 -37.90095 -36.72267 -35.41219 -34.90948 -33.04431 -31.60516 -30.89814 -29.60827 -27.70021 -26.57988 -25.76196 -24.41153 -23.67754 -22.66864 -20.75950 -20.42556 -19.49859 -18.73519 -18.53665 -18.19625 -17.63545 -17.32857 -17.22838 -16.78395 -16.73039 -16.61813 -16.35509 -15.82056 -15.24882 -14.95533 -14.85200 -14.74152 -14.36529 -14.21954 -14.15956 -13.75251 -13.60066 -13.56377 -13.44314 -13.33361 -13.05490 -12.83618 -12.64596 -12.54113 -12.51700 -12.24302 -12.10201 -11.92695 -11.83320 -11.70483 -11.63124 -10.66748 -10.63462 -9.91808 -9.53802 -9.43453 -8.25391 -6.39852 -0.82686 0.18210 0.61870 1.28362 1.35301 1.37660 1.49403 1.59496 1.80632 2.30514 2.42897 2.65705 3.04457 3.11270 3.37142 3.38111 3.61932 3.67751 3.82984 3.86666 3.90613 4.11680 4.28064 4.30012 4.31461 4.49055 4.59720 4.65658 4.73519 4.79340 4.85180 4.93246 4.99885 5.05698 5.07963 5.14713 5.18296 5.26414 5.35400 5.40840 5.49639 5.76474 5.83562 6.01874 6.48242 6.61903 6.68784 7.18256 7.34013 8.82140 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.002171 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.347179 B =12896.822528 C =13627.374371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 H 0.112 0.888 4 O -0.334 6.334 5 C 0.494 3.506 6 O -0.534 6.534 7 C -0.193 4.193 8 C 0.005 3.995 9 C -0.132 4.132 10 C -0.074 4.074 11 C -0.130 4.130 12 C -0.066 4.066 13 C -0.160 4.160 14 C 0.102 3.898 15 F -0.145 7.145 16 C 0.500 3.500 17 O -0.578 6.578 18 N -0.599 5.599 19 C 0.068 3.932 20 C 0.259 3.741 21 C -0.546 4.546 22 H 0.050 0.950 23 C 0.009 3.991 24 N -0.925 5.925 25 Si 0.967 3.033 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.267 1.267 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.166 0.834 33 H 0.131 0.869 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.158 0.842 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.002 0.998 42 H 0.034 0.966 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 3.096 29.058 29.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.129 0.871 4 O -0.249 6.249 5 C 0.343 3.657 6 O -0.426 6.426 7 C -0.211 4.211 8 C -0.014 4.014 9 C -0.133 4.133 10 C -0.092 4.092 11 C -0.148 4.148 12 C -0.084 4.084 13 C -0.179 4.179 14 C 0.083 3.917 15 F -0.123 7.123 16 C 0.287 3.713 17 O -0.458 6.458 18 N -0.331 5.331 19 C -0.073 4.073 20 C 0.139 3.861 21 C -0.584 4.584 22 H 0.069 0.931 23 C -0.190 4.190 24 N -0.565 5.565 25 Si 0.792 3.208 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.192 1.192 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.183 0.817 33 H 0.149 0.851 34 H 0.170 0.830 35 H 0.180 0.820 36 H 0.187 0.813 37 H 0.176 0.824 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.020 0.980 42 H 0.052 0.948 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.934 2.865 28.876 29.283 hybrid contribution 0.784 0.611 -0.924 1.357 sum -3.151 3.476 27.952 28.343 Atomic orbital electron populations 1.22318 0.89338 1.04464 1.05829 1.22162 0.97931 0.96846 0.81271 0.87096 1.86296 1.76994 1.41803 1.19845 1.21786 0.74157 0.85007 0.84761 1.90838 1.50140 1.16748 1.84853 1.22154 1.07313 1.02693 0.88962 1.22298 0.88808 0.99918 0.90386 1.18988 1.06939 0.95145 0.92247 1.21709 0.95239 0.92034 1.00234 1.21613 0.98808 1.02320 0.92026 1.21673 0.94819 0.92001 0.99903 1.21445 1.02145 0.97167 0.97138 1.18218 1.00920 0.77176 0.95401 1.91490 1.91932 1.31826 1.97086 1.20646 0.80128 0.85409 0.85161 1.90656 1.42279 1.26066 1.86754 1.48051 1.53913 1.25485 1.05670 1.22192 0.96431 0.84644 1.04046 1.18866 0.93901 0.91855 0.81506 1.21704 1.02374 1.22876 1.11487 0.93149 1.25834 1.02346 0.94954 0.95874 1.70045 1.39807 1.28845 1.17768 0.85370 0.78828 0.78208 0.78411 1.19472 1.20601 1.19160 0.87404 0.91223 0.89536 0.81699 0.85118 0.83022 0.81983 0.81310 0.82429 0.89638 0.89617 0.90603 0.97960 0.94768 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.25 71.98 0.67 -3.42 16 2 C 0.08 2.61 2.12 29.85 0.06 2.68 16 3 H 0.11 3.61 6.11 -2.38 -0.01 3.59 16 4 O -0.33 -11.72 9.31 -51.88 -0.48 -12.20 16 5 C 0.49 15.10 7.83 69.87 0.55 15.64 16 6 O -0.53 -17.77 15.47 19.39 0.30 -17.47 16 7 C -0.19 -4.42 9.53 23.58 0.22 -4.20 16 8 C 0.00 0.10 9.26 23.84 0.22 0.32 16 9 C -0.13 -2.28 5.87 -20.11 -0.12 -2.40 16 10 C -0.07 -0.94 9.41 22.57 0.21 -0.73 16 11 C -0.13 -1.05 10.03 22.23 0.22 -0.83 16 12 C -0.07 -0.45 10.04 22.34 0.22 -0.23 16 13 C -0.16 -1.71 10.01 22.27 0.22 -1.49 16 14 C 0.10 1.71 7.30 22.72 0.17 1.87 16 15 F -0.14 -2.90 16.62 44.97 0.75 -2.15 16 16 C 0.50 22.33 7.10 87.66 0.62 22.96 16 17 O -0.58 -31.84 16.08 15.96 0.26 -31.58 16 18 N -0.60 -26.07 2.86 -851.11 -2.43 -28.50 16 19 C 0.07 2.06 8.92 127.77 1.14 3.20 16 20 C 0.26 14.11 5.17 85.63 0.44 14.55 16 21 C -0.55 -31.94 9.39 25.60 0.24 -31.69 16 22 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 23 C 0.01 0.54 5.46 84.65 0.46 1.00 16 24 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 25 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 H 0.11 2.25 5.10 -2.39 -0.01 2.24 16 30 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.17 3.00 6.08 -2.91 -0.02 2.98 16 33 H 0.13 3.00 7.20 -2.91 -0.02 2.98 16 34 H 0.15 1.55 6.17 -2.91 -0.02 1.54 16 35 H 0.16 0.46 8.06 -2.91 -0.02 0.43 16 36 H 0.17 0.05 8.06 -2.91 -0.02 0.02 16 37 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 38 H 0.09 2.01 7.01 -2.39 -0.02 1.99 16 39 H 0.09 2.13 6.08 -2.39 -0.01 2.12 16 40 H 0.08 2.35 8.07 -2.38 -0.02 2.33 16 41 H 0.00 0.14 7.41 -2.39 -0.02 0.12 16 42 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -81.17 375.03 7.31 -73.86 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.05 Total: 9.02 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 5.56 Total: 17.21 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -2.15 Total: -84.16 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: 0.07 Total: -61.25 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.75 Total: -2.15 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -81.17 7.31 -73.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007854566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.712 kcal (2) G-P(sol) polarization free energy of solvation -81.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds