Wall clock time and date at job start Tue Mar 31 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45207 * 109.46999 * 2 1 4 4 C 1.34626 * 116.99933 * 180.02562 * 3 2 1 5 5 O 1.21512 * 120.00333 * 0.02562 * 4 3 2 6 6 N 1.34784 * 119.99814 * 180.02562 * 4 3 2 7 7 C 1.46969 * 120.59296 * 180.02562 * 6 4 3 8 8 C 1.53371 * 108.63186 * 235.20240 * 7 6 4 9 9 N 1.46958 * 108.63720 * 310.57547 * 8 7 6 10 10 S 1.65598 * 120.59462 * 235.20718 * 9 8 7 11 11 O 1.42100 * 106.39953 * 336.45483 * 10 9 8 12 12 O 1.42105 * 106.40088 * 203.54173 * 10 9 8 13 13 N 1.65593 * 107.21993 * 90.00085 * 10 9 8 14 14 C 1.46502 * 119.99605 * 269.99784 * 13 10 9 15 15 C 1.46499 * 120.00395 * 90.00069 * 13 10 9 16 16 C 1.50701 * 109.46992 * 264.99836 * 15 13 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 C 1.46969 * 118.81244 * 55.47931 * 9 8 7 25 25 C 1.46958 * 120.59493 * 359.97438 * 6 4 3 26 26 H 1.09000 * 109.47271 * 60.00136 * 1 2 3 27 27 H 1.08996 * 109.46454 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46750 * 299.99958 * 1 2 3 29 29 H 1.08999 * 109.47398 * 240.00426 * 2 1 3 30 30 H 1.09000 * 109.47271 * 119.99864 * 2 1 3 31 31 H 1.09001 * 109.60806 * 115.45696 * 7 6 4 32 32 H 1.09004 * 109.60633 * 354.94892 * 7 6 4 33 33 H 1.08997 * 109.60660 * 190.83016 * 8 7 6 34 34 H 1.09001 * 109.60926 * 70.32164 * 8 7 6 35 35 H 1.09000 * 109.47587 * 270.00096 * 14 13 10 36 36 H 1.08997 * 109.47205 * 30.00247 * 14 13 10 37 37 H 1.09003 * 109.46728 * 150.00070 * 14 13 10 38 38 H 1.09002 * 109.47391 * 144.99826 * 15 13 10 39 39 H 1.09001 * 109.46813 * 24.99883 * 15 13 10 40 40 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.61131 * 64.26596 * 24 9 8 42 42 H 1.08998 * 109.61196 * 184.77868 * 24 9 8 43 43 H 1.09001 * 109.61045 * 244.54044 * 25 6 4 44 44 H 1.09004 * 109.61181 * 5.04878 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0015 6 7 3.8638 2.7910 0.0000 7 6 5.3188 2.9987 -0.0012 8 6 5.6877 3.8881 1.1926 9 7 4.8046 5.0627 1.1938 10 16 5.4375 6.5930 1.1943 11 8 6.7459 6.4858 1.7381 12 8 4.4362 7.4411 1.7398 13 7 5.6240 7.0469 -0.3872 14 6 6.8789 6.7628 -1.0877 15 6 4.5341 7.7326 -1.0860 16 6 3.7128 6.7244 -1.8475 17 1 3.9760 5.6775 -1.8140 18 6 2.6246 7.1383 -2.5862 19 7 2.3038 8.4130 -2.6266 20 14 1.6062 5.8884 -3.5296 21 1 1.0396 4.8951 -2.5821 22 1 0.5015 6.5835 -4.2379 23 1 2.4680 5.1931 -4.5191 24 6 3.3497 4.8550 1.2005 25 6 2.9807 3.9656 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.6177 3.4880 -0.9282 32 1 5.8255 2.0377 0.0880 33 1 6.7250 4.2103 1.1018 34 1 5.5552 3.3299 2.1194 35 1 7.5655 7.5992 -0.9569 36 1 7.3269 5.8576 -0.6779 37 1 6.6781 6.6202 -2.1495 38 1 4.9501 8.4618 -1.7811 39 1 3.9012 8.2428 -0.3598 40 1 1.5385 8.7043 -3.1466 41 1 3.0545 4.3641 2.1279 42 1 2.8425 5.8161 1.1150 43 1 3.1136 4.5237 -0.9263 44 1 1.9433 3.6434 0.0908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027935597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:17 Heat of formation + Delta-G solvation = -140.174134 kcal Electronic energy + Delta-G solvation = -29591.941808 eV Core-core repulsion = 25479.020525 eV Total energy + Delta-G solvation = -4112.921284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53127 -38.19881 -36.80207 -36.33374 -35.53956 -35.29711 -33.86432 -32.58846 -31.77444 -31.12961 -27.86244 -27.04570 -25.15582 -24.07526 -23.35497 -22.53735 -21.90796 -20.27418 -18.86922 -17.87442 -17.17271 -16.86822 -16.69611 -16.62710 -16.32304 -15.91440 -14.99795 -14.85349 -14.63627 -14.38135 -14.23230 -13.70997 -13.55077 -13.43266 -13.26433 -12.93021 -12.45852 -12.39892 -12.23025 -12.14425 -11.96119 -11.88247 -11.76070 -11.60997 -11.39852 -11.22862 -11.20584 -11.13016 -10.85578 -10.77949 -10.58635 -10.56299 -10.42344 -10.14067 -9.82156 -9.35970 -8.58430 -8.33303 -8.07277 -6.19781 -4.27187 1.14640 2.16874 2.87782 3.18197 3.24709 3.26540 3.35851 3.88921 4.03757 4.27167 4.77373 4.80409 4.81837 4.87761 5.00979 5.14108 5.15210 5.25362 5.34173 5.41098 5.45176 5.54719 5.58544 5.63937 5.65526 5.81461 5.84005 5.94193 6.02638 6.14376 6.24001 6.32684 6.39944 6.47945 6.50491 6.76428 7.28091 7.36262 7.41618 7.56621 7.77304 8.07087 8.33267 8.77072 9.38580 10.87987 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010159 B = 0.005915 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.420320 B = 4732.721196 C = 6575.115724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.083 3.917 3 O -0.368 6.368 4 C 0.651 3.349 5 O -0.584 6.584 6 N -0.585 5.585 7 C 0.114 3.886 8 C 0.111 3.889 9 N -1.005 6.005 10 S 2.786 3.214 11 O -0.997 6.997 12 O -0.974 6.974 13 N -0.996 5.996 14 C 0.107 3.893 15 C 0.244 3.756 16 C -0.543 4.543 17 H 0.066 0.934 18 C 0.069 3.931 19 N -0.885 5.885 20 Si 0.884 3.116 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.119 3.881 25 C 0.082 3.918 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.051 0.949 40 H 0.266 0.734 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 -12.079 4.656 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 O -0.282 6.282 4 C 0.406 3.594 5 O -0.474 6.474 6 N -0.325 5.325 7 C -0.010 4.010 8 C -0.016 4.016 9 N -0.843 5.843 10 S 2.795 3.205 11 O -0.981 6.981 12 O -0.958 6.958 13 N -0.838 5.838 14 C -0.040 4.040 15 C 0.122 3.878 16 C -0.583 4.583 17 H 0.084 0.916 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.711 3.289 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.008 4.008 25 C -0.041 4.041 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.128 -11.735 5.345 12.944 hybrid contribution -0.781 -0.982 -1.117 1.680 sum 0.347 -12.717 4.228 13.406 Atomic orbital electron populations 1.21827 0.92671 1.02840 1.03725 1.22907 0.94767 0.79025 1.02507 1.86261 1.22211 1.32745 1.86990 1.17967 0.81091 0.84035 0.76312 1.90947 1.59823 1.39489 1.57146 1.46807 1.07441 1.03156 1.75121 1.22058 0.78272 1.01284 0.99339 1.21733 0.94300 0.87142 0.98439 1.58232 1.13523 1.22896 1.89685 1.01837 0.72585 0.72549 0.73573 1.93534 1.39640 1.86835 1.78076 1.93575 1.60499 1.64344 1.77402 1.57672 1.22814 1.72110 1.31239 1.21222 0.84767 0.99120 0.98899 1.19221 0.83048 0.92465 0.93038 1.21550 1.12038 0.94243 1.30422 0.91571 1.24919 0.97206 0.95127 0.96277 1.69911 1.27638 1.14220 1.40531 0.86804 0.80088 0.81515 0.80504 1.19574 1.21138 1.20246 1.21778 0.79645 1.01905 0.97446 1.22683 0.93840 0.85851 1.01686 0.91381 0.90181 0.91412 0.91363 0.91370 0.90011 0.87954 0.88138 0.90964 0.93711 0.93019 0.90772 0.94422 0.93098 0.92419 0.91619 0.87040 0.87322 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 2 C 0.08 0.92 6.19 37.16 0.23 1.15 16 3 O -0.37 -5.34 8.85 -40.29 -0.36 -5.70 16 4 C 0.65 10.45 8.43 54.06 0.46 10.91 16 5 O -0.58 -10.31 15.54 -19.28 -0.30 -10.60 16 6 N -0.59 -8.96 2.95 -177.97 -0.52 -9.49 16 7 C 0.11 1.53 6.59 -3.59 -0.02 1.51 16 8 C 0.11 1.46 6.55 -3.60 -0.02 1.44 16 9 N -1.01 -15.99 3.32 -112.98 -0.37 -16.36 16 10 S 2.79 52.39 6.07 -107.50 -0.65 51.74 16 11 O -1.00 -19.31 15.90 -57.17 -0.91 -20.22 16 12 O -0.97 -21.37 15.37 -57.17 -0.88 -22.25 16 13 N -1.00 -19.18 3.23 -123.05 -0.40 -19.57 16 14 C 0.11 1.70 10.31 59.85 0.62 2.31 16 15 C 0.24 5.64 5.41 -5.19 -0.03 5.62 16 16 C -0.54 -12.88 8.78 -34.44 -0.30 -13.18 16 17 H 0.07 1.48 5.56 -52.49 -0.29 1.19 16 18 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -23.90 13.29 55.43 0.74 -23.17 16 20 Si 0.88 19.38 29.54 -169.99 -5.02 14.36 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.12 1.85 6.58 -3.34 -0.02 1.83 16 25 C 0.08 1.31 6.63 -3.34 -0.02 1.28 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.10 1.31 6.99 -51.93 -0.36 0.94 16 33 H 0.10 1.22 7.09 -51.93 -0.37 0.85 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 37 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 38 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 39 H 0.05 1.30 6.91 -51.93 -0.36 0.94 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.11 1.91 7.08 -51.93 -0.37 1.55 16 43 H 0.11 1.98 5.06 -51.93 -0.26 1.72 16 44 H 0.09 1.42 6.91 -51.93 -0.36 1.06 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -31.36 367.75 -8.52 -39.89 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.56 Total: 2.24 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 1.17 Total: 13.59 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -0.56 Total: -68.59 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -2.44 Total: -58.77 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 52.39 SS G_CDS: -0.65 Total: 51.74 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.36 -8.52 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027935597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.284 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds