Wall clock time and date at job start Tue Mar 31 2020 18:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46493 * 109.47393 * 2 1 4 4 C 1.46502 * 119.99929 * 264.11341 * 3 2 1 5 5 C 1.53001 * 109.47138 * 262.75585 * 4 3 2 6 6 H 1.09005 * 110.43370 * 298.22893 * 5 4 3 7 7 C 1.54811 * 110.48879 * 175.54133 * 5 4 3 8 8 C 1.54998 * 102.08929 * 220.44300 * 7 5 4 9 9 O 1.44376 * 103.49176 * 37.02036 * 8 7 5 10 10 C 1.43743 * 106.97614 * 319.94280 * 9 8 7 11 11 C 1.34781 * 120.00365 * 84.11187 * 3 2 1 12 12 O 1.21603 * 120.00420 * 185.92352 * 11 3 2 13 13 C 1.47433 * 119.99612 * 5.92179 * 11 3 2 14 14 C 1.39680 * 120.21590 * 56.83009 * 13 11 3 15 15 C 1.37802 * 119.93997 * 179.70399 * 14 13 11 16 16 C 1.38660 * 120.37993 * 0.29493 * 15 14 13 17 17 C 1.37913 * 120.43850 * 359.97438 * 16 15 14 18 18 C 1.39112 * 120.04873 * 0.02562 * 17 16 15 19 19 S 1.76196 * 120.18674 * 179.97438 * 18 17 16 20 20 C 1.76204 * 100.00270 * 352.15901 * 19 18 17 21 21 H 1.07996 * 119.99866 * 4.83493 * 20 19 18 22 22 C 1.38808 * 120.00067 * 184.83023 * 20 19 18 23 23 N 1.31554 * 120.00163 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99845 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47057 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46825 * 120.00200 * 24 22 20 27 27 H 1.48500 * 109.47067 * 240.00288 * 24 22 20 28 28 H 1.08996 * 109.47413 * 300.00482 * 1 2 3 29 29 H 1.09006 * 109.46593 * 60.00584 * 1 2 3 30 30 H 1.09002 * 109.47613 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47339 * 239.99390 * 2 1 3 32 32 H 1.09004 * 109.46734 * 119.99941 * 2 1 3 33 33 H 1.09000 * 109.47466 * 22.75614 * 4 3 2 34 34 H 1.09001 * 109.47012 * 142.76070 * 4 3 2 35 35 H 1.08997 * 110.90602 * 338.63732 * 7 5 4 36 36 H 1.09003 * 110.90959 * 102.24284 * 7 5 4 37 37 H 1.09002 * 110.61591 * 278.52047 * 8 7 5 38 38 H 1.09002 * 110.75020 * 155.59065 * 8 7 5 39 39 H 1.09009 * 109.87339 * 267.08563 * 10 9 8 40 40 H 1.09000 * 109.88075 * 145.93922 * 10 9 8 41 41 H 1.08008 * 120.02646 * 359.97133 * 14 13 11 42 42 H 1.07999 * 119.81201 * 180.27446 * 15 14 13 43 43 H 1.07996 * 119.78200 * 180.02562 * 16 15 14 44 44 H 1.08002 * 119.97322 * 180.02562 * 17 16 15 45 45 H 0.96993 * 120.00080 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3852 2.0283 -1.2621 5 6 3.8987 1.9307 -1.4642 6 1 4.4239 2.4510 -0.6632 7 6 4.2995 2.5083 -2.8435 8 6 5.3786 1.5010 -3.3160 9 8 4.8846 0.2304 -2.8406 10 6 4.3400 0.4558 -1.5295 11 6 2.1301 2.0565 1.1610 12 8 2.4317 3.2345 1.1527 13 6 1.8867 1.3669 2.4412 14 6 2.6221 0.2278 2.7770 15 6 2.3941 -0.4087 3.9778 16 6 1.4332 0.0713 4.8546 17 6 0.6943 1.1915 4.5365 18 6 0.9095 1.8482 3.3291 19 16 -0.0329 3.2792 2.9186 20 6 -1.2020 3.2642 4.2368 21 1 -1.1147 2.5340 5.0277 22 6 -2.2352 4.1909 4.2588 23 7 -2.3418 5.0802 3.2952 24 14 -3.4742 4.1754 5.6567 25 1 -3.1350 3.0857 6.6067 26 1 -3.4364 5.4795 6.3660 27 1 -4.8358 3.9492 5.1089 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.8756 1.5308 -2.0872 34 1 2.0896 3.0771 -1.2319 35 1 3.4486 2.5148 -3.5246 36 1 4.7201 3.5085 -2.7390 37 1 6.3431 1.7314 -2.8635 38 1 5.4564 1.5001 -4.4033 39 1 5.1015 0.2629 -0.7738 40 1 3.4812 -0.1956 -1.3678 41 1 3.3717 -0.1512 2.0980 42 1 2.9670 -1.2867 4.2373 43 1 1.2629 -0.4348 5.7933 44 1 -0.0520 1.5592 5.2252 45 1 -3.0635 5.7280 3.3107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048432202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:08 Heat of formation + Delta-G solvation = -70.978438 kcal Electronic energy + Delta-G solvation = -27164.953561 eV Core-core repulsion = 23465.882091 eV Total energy + Delta-G solvation = -3699.071470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52447 -40.22330 -38.99129 -37.09223 -34.80793 -34.13714 -32.10316 -31.85322 -31.37380 -30.06935 -27.90634 -27.08729 -25.13092 -23.77052 -23.43214 -23.31857 -21.72347 -20.69046 -19.56831 -18.31976 -17.74231 -17.46741 -17.41550 -17.13098 -16.98117 -16.35651 -15.95539 -15.87517 -15.25296 -15.13737 -14.85465 -14.63298 -14.57854 -14.34512 -13.85767 -13.68901 -13.54725 -13.38182 -13.26932 -13.02921 -12.87768 -12.86311 -12.70609 -12.48264 -12.26259 -12.12593 -12.05289 -11.86045 -11.59501 -11.48289 -11.40520 -10.99612 -10.62578 -10.43619 -10.36987 -9.86010 -9.57286 -8.53023 -8.49673 -6.29492 0.19719 0.50507 1.24866 1.34814 1.44616 1.59084 1.69137 2.03815 2.17897 2.81028 2.94366 3.02153 3.16091 3.53580 3.62586 3.76769 3.89938 4.03179 4.04219 4.22140 4.25256 4.28568 4.31719 4.34866 4.52041 4.58576 4.60710 4.72220 4.73345 4.76832 4.84531 4.85883 4.90191 4.92971 4.97843 5.06579 5.09977 5.16509 5.35225 5.36149 5.47209 5.52989 5.65242 5.66677 5.92443 6.07273 6.14474 6.35685 6.91848 7.19169 8.57671 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.003479 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.143943 B = 8046.785617 C = 8956.589748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.096 3.904 3 N -0.603 5.603 4 C 0.126 3.874 5 C -0.134 4.134 6 H 0.065 0.935 7 C -0.144 4.144 8 C 0.046 3.954 9 O -0.395 6.395 10 C 0.053 3.947 11 C 0.567 3.433 12 O -0.568 6.568 13 C -0.157 4.157 14 C -0.067 4.067 15 C -0.144 4.144 16 C -0.077 4.077 17 C -0.167 4.167 18 C -0.066 4.066 19 S -0.013 6.013 20 C -0.572 4.572 21 H 0.100 0.900 22 C 0.022 3.978 23 N -0.906 5.906 24 Si 0.998 3.002 25 H -0.255 1.255 26 H -0.272 1.272 27 H -0.269 1.269 28 H 0.024 0.976 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.153 0.847 42 H 0.166 0.834 43 H 0.150 0.850 44 H 0.119 0.881 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.721 -14.946 -8.977 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.335 5.335 4 C 0.004 3.996 5 C -0.154 4.154 6 H 0.083 0.917 7 C -0.182 4.182 8 C -0.030 4.030 9 O -0.315 6.315 10 C -0.024 4.024 11 C 0.356 3.644 12 O -0.447 6.447 13 C -0.169 4.169 14 C -0.087 4.087 15 C -0.167 4.167 16 C -0.098 4.098 17 C -0.193 4.193 18 C -0.183 4.183 19 S 0.242 5.758 20 C -0.719 4.719 21 H 0.117 0.883 22 C -0.183 4.183 23 N -0.541 5.541 24 Si 0.819 3.181 25 H -0.179 1.179 26 H -0.197 1.197 27 H -0.194 1.194 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.170 0.830 42 H 0.183 0.817 43 H 0.167 0.833 44 H 0.137 0.863 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.699 -13.357 -10.146 20.450 hybrid contribution -1.205 0.371 1.976 2.344 sum 10.494 -12.986 -8.171 18.588 Atomic orbital electron populations 1.22171 0.96436 1.03043 1.01091 1.22077 0.94235 0.80936 1.05223 1.47962 1.64766 1.15316 1.05449 1.21530 0.94221 0.98592 0.85300 1.22854 0.96388 0.97184 0.98990 0.91690 1.23145 1.00161 1.00099 0.94841 1.23687 0.96270 0.81909 1.01159 1.88836 1.79170 1.31341 1.32143 1.23349 0.98707 0.95316 0.85018 1.18474 0.75551 0.85558 0.84786 1.90757 1.48963 1.17122 1.87873 1.19436 1.02231 1.00027 0.95252 1.21269 0.97630 0.91823 0.97962 1.21302 0.99648 1.02009 0.93711 1.21484 0.94157 0.93968 1.00159 1.21445 1.02864 0.98644 0.96302 1.22658 0.98928 0.99521 0.97183 1.84138 1.30023 1.25746 1.35850 1.23812 1.14468 1.21983 1.11603 0.88293 1.26174 0.99136 0.93471 0.99562 1.70130 1.32675 1.17659 1.33590 0.84920 0.77069 0.78915 0.77238 1.17858 1.19724 1.19414 0.95686 0.92706 0.89100 0.86739 0.88716 0.87583 0.92538 0.89267 0.89575 0.91799 0.87068 0.92390 0.88343 0.82967 0.81675 0.83263 0.86320 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 10.19 71.98 0.73 -3.56 16 2 C 0.10 2.09 5.18 86.38 0.45 2.54 16 3 N -0.60 -17.48 2.26 -825.69 -1.87 -19.35 16 4 C 0.13 3.19 4.71 86.38 0.41 3.60 16 5 C -0.13 -2.92 3.28 -9.81 -0.03 -2.96 16 6 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 7 C -0.14 -2.45 6.71 31.90 0.21 -2.24 16 8 C 0.05 0.71 7.72 72.67 0.56 1.27 16 9 O -0.40 -8.00 11.52 -148.98 -1.72 -9.72 16 10 C 0.05 1.00 7.14 72.35 0.52 1.51 16 11 C 0.57 22.26 6.31 86.66 0.55 22.80 16 12 O -0.57 -27.55 15.90 -4.04 -0.06 -27.61 16 13 C -0.16 -6.02 4.76 -19.95 -0.09 -6.12 16 14 C -0.07 -1.85 7.63 22.51 0.17 -1.68 16 15 C -0.14 -3.50 10.02 22.27 0.22 -3.28 16 16 C -0.08 -2.28 10.03 22.29 0.22 -2.05 16 17 C -0.17 -6.82 9.25 22.40 0.21 -6.61 16 18 C -0.07 -3.04 6.14 23.04 0.14 -2.90 16 19 S -0.01 -0.73 20.04 -56.49 -1.13 -1.86 16 20 C -0.57 -32.80 9.08 67.96 0.62 -32.18 16 21 H 0.10 5.34 4.85 -2.91 -0.01 5.33 16 22 C 0.02 1.25 5.49 84.87 0.47 1.72 16 23 N -0.91 -54.68 13.22 21.65 0.29 -54.39 16 24 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H 0.02 0.85 7.98 -2.39 -0.02 0.83 16 29 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.11 1.67 5.98 -2.38 -0.01 1.65 16 32 H 0.09 1.92 4.74 -2.38 -0.01 1.90 16 33 H 0.11 2.09 7.99 -2.39 -0.02 2.08 16 34 H 0.06 1.78 7.57 -2.39 -0.02 1.77 16 35 H 0.09 1.36 7.86 -2.39 -0.02 1.34 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.10 1.63 4.66 -2.39 -0.01 1.62 16 41 H 0.15 3.09 7.51 -2.91 -0.02 3.06 16 42 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 43 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 44 H 0.12 5.23 4.98 -2.91 -0.01 5.22 16 45 H 0.28 15.35 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -78.00 372.98 3.89 -74.12 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 1.01 Total: 23.69 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 5.35 Total: -30.14 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -1.58 Total: -73.74 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.78 Total: -37.33 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -1.13 Total: -1.86 kcal Total: -78.00 3.89 -74.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048432202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.138 kcal (2) G-P(sol) polarization free energy of solvation -78.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds