Wall clock time and date at job start Tue Mar 31 2020 18:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46890 * 2 1 4 4 O 1.42893 * 109.47567 * 119.99827 * 2 1 3 5 5 C 1.34911 * 117.00258 * 270.00427 * 4 2 1 6 6 O 1.21621 * 119.99929 * 359.97438 * 5 4 2 7 7 C 1.46234 * 120.00021 * 179.97438 * 5 4 2 8 8 C 1.34922 * 119.99682 * 180.02562 * 7 5 4 9 9 C 1.47178 * 119.99769 * 180.02562 * 8 7 5 10 10 C 1.39876 * 120.15864 * 0.24693 * 9 8 7 11 11 C 1.37877 * 119.87383 * 180.32331 * 10 9 8 12 12 C 1.38393 * 120.19866 * 359.70289 * 11 10 9 13 13 C 1.38598 * 120.32574 * 0.02562 * 12 11 10 14 14 F 1.35101 * 119.94191 * 179.97438 * 13 12 11 15 15 C 1.38143 * 120.11769 * 0.02562 * 13 12 11 16 16 C 1.50698 * 109.47326 * 240.00318 * 2 1 3 17 17 O 1.21284 * 119.99990 * 256.02672 * 16 2 1 18 18 N 1.34780 * 120.00362 * 76.02539 * 16 2 1 19 19 C 1.46500 * 119.99794 * 5.36301 * 18 16 2 20 20 C 1.46493 * 120.00139 * 185.36333 * 18 16 2 21 21 C 1.50708 * 109.47124 * 90.00108 * 20 18 16 22 22 H 1.08000 * 119.99740 * 359.97438 * 21 20 18 23 23 C 1.37873 * 120.00059 * 180.02562 * 21 20 18 24 24 N 1.31519 * 119.99808 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00175 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47442 * 90.00154 * 25 23 21 27 27 H 1.48507 * 109.47249 * 210.00401 * 25 23 21 28 28 H 1.48504 * 109.47101 * 330.00020 * 25 23 21 29 29 H 1.09005 * 109.46877 * 186.13833 * 1 2 3 30 30 H 1.08998 * 109.47486 * 306.13558 * 1 2 3 31 31 H 1.08994 * 109.47526 * 66.14169 * 1 2 3 32 32 H 1.07993 * 120.00452 * 0.02562 * 7 5 4 33 33 H 1.07998 * 120.00217 * 359.97438 * 8 7 5 34 34 H 1.07995 * 120.06363 * 0.03030 * 10 9 8 35 35 H 1.07993 * 119.90151 * 179.68272 * 11 10 9 36 36 H 1.07998 * 119.83993 * 179.97438 * 12 11 10 37 37 H 1.08007 * 120.09840 * 179.97438 * 15 13 12 38 38 H 1.09000 * 109.47019 * 84.82290 * 19 18 16 39 39 H 1.08991 * 109.47082 * 204.81965 * 19 18 16 40 40 H 1.09001 * 109.47092 * 324.82477 * 19 18 16 41 41 H 1.08999 * 109.47145 * 209.99759 * 20 18 16 42 42 H 1.08996 * 109.47538 * 330.00405 * 20 18 16 43 43 H 0.97001 * 119.99523 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2105 0.0787 2.2678 6 8 1.9900 1.2744 2.2369 7 6 2.6968 -0.5435 3.4986 8 6 2.9005 0.2088 4.5999 9 6 3.3905 -0.4173 5.8385 10 6 3.6511 -1.7911 5.8760 11 6 4.1036 -2.3727 7.0413 12 6 4.3065 -1.6004 8.1716 13 6 4.0563 -0.2375 8.1421 14 9 4.2565 0.5090 9.2502 15 6 3.6016 0.3588 6.9819 16 6 2.0323 -0.7103 -1.2305 17 8 2.4736 -1.8366 -1.1428 18 7 1.9913 -0.0940 -2.4284 19 6 1.5689 1.3059 -2.5178 20 6 2.3689 -0.8241 -3.6410 21 6 1.1507 -1.4917 -4.2254 22 1 0.1912 -1.3834 -3.7415 23 6 1.2612 -2.2417 -5.3770 24 7 0.1980 -2.8239 -5.8872 25 14 2.9208 -2.4296 -6.2135 26 1 3.6185 -3.6212 -5.6670 27 1 2.7220 -2.5996 -7.6753 28 1 3.7414 -1.2175 -5.9633 29 1 -0.3633 -1.0218 0.1099 30 1 -0.3634 0.6060 0.8299 31 1 -0.3634 0.4156 -0.9398 32 1 2.8930 -1.6051 3.5260 33 1 2.7047 1.2705 4.5725 34 1 3.4936 -2.3959 4.9952 35 1 4.3000 -3.4342 7.0722 36 1 4.6607 -2.0620 9.0814 37 1 3.4064 1.4209 6.9594 38 1 2.4228 1.9559 -2.3267 39 1 1.1775 1.5043 -3.5155 40 1 0.7924 1.4991 -1.7777 41 1 2.7861 -0.1283 -4.3690 42 1 3.1136 -1.5802 -3.3929 43 1 0.2757 -3.3512 -6.6976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052422377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:55 Heat of formation + Delta-G solvation = -133.466660 kcal Electronic energy + Delta-G solvation = -27201.744236 eV Core-core repulsion = 22933.749897 eV Total energy + Delta-G solvation = -4267.994339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.93881 -42.02425 -40.62092 -40.05639 -37.88104 -36.73410 -35.22587 -34.80168 -33.15804 -31.91288 -30.72584 -30.23223 -27.63900 -26.62899 -25.59487 -24.08678 -23.78580 -22.65045 -20.76576 -20.38531 -19.34274 -19.13922 -18.37602 -18.12737 -17.58048 -17.27295 -17.23385 -17.09390 -16.63906 -16.55801 -16.30886 -15.95021 -15.27368 -15.01836 -14.76702 -14.61516 -14.43897 -14.33950 -14.09090 -13.75988 -13.72966 -13.62787 -13.47807 -13.35660 -13.22994 -12.87488 -12.63789 -12.61598 -12.45340 -12.14783 -12.03975 -11.92016 -11.77399 -11.73892 -11.48384 -10.83061 -10.68675 -9.91271 -9.50894 -9.46795 -8.33790 -6.39405 -0.78242 0.15869 0.64431 1.28458 1.35458 1.38161 1.46291 1.52861 1.82770 2.31313 2.35289 2.66370 3.00310 3.13366 3.36211 3.47032 3.68428 3.70325 3.81317 3.89723 4.00823 4.03717 4.18971 4.26827 4.30050 4.49267 4.55242 4.60806 4.69593 4.75805 4.79456 4.85038 4.91144 5.01073 5.06729 5.07997 5.11779 5.25762 5.31959 5.43047 5.45425 5.51963 5.81859 6.21361 6.46010 6.61013 6.62125 7.13146 7.27704 8.82600 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024612 B = 0.001894 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.397990 B =14782.159766 C =15348.596879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.081 3.919 3 H 0.123 0.877 4 O -0.336 6.336 5 C 0.495 3.505 6 O -0.529 6.529 7 C -0.194 4.194 8 C 0.011 3.989 9 C -0.063 4.063 10 C -0.110 4.110 11 C -0.091 4.091 12 C -0.138 4.138 13 C 0.075 3.925 14 F -0.147 7.147 15 C -0.130 4.130 16 C 0.503 3.497 17 O -0.574 6.574 18 N -0.598 5.598 19 C 0.065 3.935 20 C 0.222 3.778 21 C -0.538 4.538 22 H 0.034 0.966 23 C 0.012 3.988 24 N -0.942 5.942 25 Si 0.946 3.054 26 H -0.277 1.277 27 H -0.275 1.275 28 H -0.237 1.237 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.021 0.979 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.860 8.266 27.557 29.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 H 0.141 0.859 4 O -0.251 6.251 5 C 0.343 3.657 6 O -0.421 6.421 7 C -0.212 4.212 8 C -0.007 4.007 9 C -0.063 4.063 10 C -0.127 4.127 11 C -0.109 4.109 12 C -0.156 4.156 13 C 0.056 3.944 14 F -0.126 7.126 15 C -0.149 4.149 16 C 0.290 3.710 17 O -0.453 6.453 18 N -0.330 5.330 19 C -0.076 4.076 20 C 0.100 3.900 21 C -0.577 4.577 22 H 0.052 0.948 23 C -0.186 4.186 24 N -0.582 5.582 25 Si 0.769 3.231 26 H -0.202 1.202 27 H -0.200 1.200 28 H -0.160 1.160 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.179 0.821 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.182 0.818 36 H 0.174 0.826 37 H 0.170 0.830 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.958 7.979 27.432 29.656 hybrid contribution 0.121 -0.207 -0.675 0.716 sum 8.079 7.773 26.757 29.011 Atomic orbital electron populations 1.22189 0.90568 1.03932 1.05131 1.22109 0.97046 0.97403 0.81266 0.85946 1.86320 1.76879 1.41976 1.19961 1.21828 0.74149 0.85031 0.84683 1.90836 1.49940 1.16568 1.84761 1.22220 1.07093 1.02738 0.89185 1.22458 0.88308 1.00350 0.89600 1.18722 1.01232 0.93936 0.92386 1.21902 0.97184 0.93752 0.99900 1.21335 0.96794 1.01757 0.90976 1.21666 1.00842 0.91624 1.01490 1.17794 1.03146 0.90220 0.83275 1.91503 1.93024 1.76752 1.51326 1.21494 1.00353 1.01833 0.91199 1.20648 0.78858 0.86348 0.85167 1.90648 1.47533 1.20750 1.86397 1.47829 1.65225 1.13860 1.06051 1.22193 1.01270 0.79407 1.04774 1.19452 0.94991 0.92718 0.82805 1.21534 0.94960 1.31653 1.09554 0.94776 1.25823 1.00889 0.94281 0.97600 1.70042 1.31476 1.34157 1.22515 0.85742 0.79457 0.80194 0.77734 1.20242 1.20027 1.16049 0.92064 0.88686 0.89055 0.82137 0.83677 0.83077 0.81751 0.82623 0.83005 0.90022 0.90024 0.89567 0.92496 0.96064 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 9.17 71.98 0.66 -3.85 16 2 C 0.08 2.59 2.09 29.85 0.06 2.65 16 3 H 0.12 3.40 6.27 -2.39 -0.01 3.38 16 4 O -0.34 -10.82 9.35 -51.94 -0.49 -11.31 16 5 C 0.49 13.00 7.84 69.90 0.55 13.55 16 6 O -0.53 -14.96 15.47 19.44 0.30 -14.66 16 7 C -0.19 -3.59 9.54 23.59 0.22 -3.36 16 8 C 0.01 0.17 9.46 23.86 0.23 0.39 16 9 C -0.06 -0.81 5.87 -20.15 -0.12 -0.93 16 10 C -0.11 -1.18 9.41 22.58 0.21 -0.97 16 11 C -0.09 -0.77 10.03 22.22 0.22 -0.54 16 12 C -0.14 -1.37 10.02 22.39 0.22 -1.14 16 13 C 0.07 1.01 7.29 22.33 0.16 1.17 16 14 F -0.15 -2.34 17.26 44.97 0.78 -1.56 16 15 C -0.13 -1.66 9.77 22.63 0.22 -1.44 16 16 C 0.50 21.22 6.95 87.66 0.61 21.83 16 17 O -0.57 -29.72 16.13 15.49 0.25 -29.47 16 18 N -0.60 -24.30 2.86 -851.15 -2.43 -26.73 16 19 C 0.07 1.85 9.79 127.77 1.25 3.10 16 20 C 0.22 10.71 4.25 85.64 0.36 11.08 16 21 C -0.54 -31.17 9.94 25.60 0.25 -30.92 16 22 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 23 C 0.01 0.73 5.47 84.65 0.46 1.19 16 24 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 25 Si 0.95 43.87 27.47 68.60 1.88 45.76 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 28 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 29 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.09 2.46 6.33 -2.39 -0.02 2.45 16 32 H 0.16 2.39 6.07 -2.91 -0.02 2.37 16 33 H 0.15 2.06 7.52 -2.91 -0.02 2.03 16 34 H 0.15 1.25 6.17 -2.91 -0.02 1.23 16 35 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 36 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 2.35 8.03 -2.39 -0.02 2.33 16 40 H 0.09 2.03 4.92 -2.39 -0.01 2.02 16 41 H 0.06 2.48 7.13 -2.39 -0.02 2.46 16 42 H 0.02 1.11 6.78 -2.39 -0.02 1.09 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -79.76 374.31 7.17 -72.59 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.99 Total: 12.09 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.59 Total: 11.80 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -2.13 Total: -85.23 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: 0.06 Total: -55.44 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.78 Total: -1.56 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Total: -79.76 7.17 -72.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052422377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.878 kcal (2) G-P(sol) polarization free energy of solvation -79.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds