Wall clock time and date at job start Tue Mar 31 2020 18:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47214 * 2 1 4 4 C 1.46496 * 119.99986 * 264.47818 * 3 2 1 5 5 C 1.53003 * 109.47614 * 272.94369 * 4 3 2 6 6 H 1.08998 * 109.81678 * 301.88618 * 5 4 3 7 7 C 1.54386 * 109.90538 * 180.95616 * 5 4 3 8 8 C 1.55309 * 102.24786 * 219.08260 * 7 5 4 9 9 C 1.54949 * 100.94173 * 34.13296 * 8 7 5 10 10 O 1.43236 * 109.83151 * 62.77402 * 5 4 3 11 11 C 1.34781 * 120.00340 * 84.48443 * 3 2 1 12 12 O 1.21603 * 120.00212 * 185.56593 * 11 3 2 13 13 C 1.47426 * 119.99555 * 5.56144 * 11 3 2 14 14 C 1.39678 * 120.21734 * 54.24513 * 13 11 3 15 15 C 1.37814 * 119.93960 * 179.67256 * 14 13 11 16 16 C 1.38657 * 120.37760 * 0.62860 * 15 14 13 17 17 C 1.37915 * 120.44253 * 359.67108 * 16 15 14 18 18 C 1.39113 * 120.04563 * 0.02562 * 17 16 15 19 19 S 1.76207 * 120.18671 * 180.02562 * 18 17 16 20 20 C 1.76201 * 100.00076 * 8.39550 * 19 18 17 21 21 H 1.08003 * 119.99794 * 5.52320 * 20 19 18 22 22 C 1.38803 * 119.99632 * 185.52722 * 20 19 18 23 23 N 1.31550 * 120.00066 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99548 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47385 * 59.99729 * 24 22 20 26 26 H 1.48500 * 109.47227 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47064 * 299.99637 * 24 22 20 28 28 H 1.09001 * 109.46696 * 64.96448 * 1 2 3 29 29 H 1.09002 * 109.47070 * 184.96126 * 1 2 3 30 30 H 1.08996 * 109.47303 * 304.96689 * 1 2 3 31 31 H 1.09001 * 109.47113 * 239.99396 * 2 1 3 32 32 H 1.09009 * 109.46912 * 119.99593 * 2 1 3 33 33 H 1.09007 * 109.47339 * 152.93836 * 4 3 2 34 34 H 1.09003 * 109.46833 * 32.94255 * 4 3 2 35 35 H 1.08995 * 110.84941 * 337.27357 * 7 5 4 36 36 H 1.08998 * 110.84260 * 100.89772 * 7 5 4 37 37 H 1.08993 * 111.12472 * 276.21214 * 8 7 5 38 38 H 1.08999 * 111.15695 * 152.06324 * 8 7 5 39 39 H 1.08998 * 110.31085 * 204.63336 * 9 8 7 40 40 H 1.09002 * 110.39051 * 82.50899 * 9 8 7 41 41 H 1.07996 * 120.03013 * 359.97438 * 14 13 11 42 42 H 1.07992 * 119.81315 * 180.31747 * 15 14 13 43 43 H 1.08000 * 119.78208 * 179.69634 * 16 15 14 44 44 H 1.07995 * 119.97750 * 180.02562 * 17 16 15 45 45 H 0.97009 * 119.99693 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3776 2.0311 -1.2628 5 6 3.8365 1.7177 -1.6008 6 1 4.4842 2.0570 -0.7924 7 6 4.2329 2.4179 -2.9184 8 6 5.1229 1.3467 -3.6059 9 6 4.4278 0.0430 -3.1390 10 8 3.9985 0.3077 -1.7941 11 6 2.1372 2.0540 1.1618 12 8 2.4451 3.2304 1.1544 13 6 1.8939 1.3637 2.4415 14 6 2.5855 0.1899 2.7496 15 6 2.3585 -0.4471 3.9505 16 6 1.4367 0.0633 4.8517 17 6 0.7406 1.2179 4.5609 18 6 0.9601 1.8789 3.3567 19 16 0.0733 3.3546 2.9816 20 6 -0.7138 3.6410 4.5318 21 1 -0.4821 3.0129 5.3793 22 6 -1.6317 4.6738 4.6637 23 7 -1.9136 5.4391 3.6315 24 14 -2.4656 4.9779 6.3074 25 1 -1.4376 5.2780 7.3360 26 1 -3.3944 6.1302 6.1856 27 1 -3.2275 3.7676 6.7073 28 1 -0.3633 0.4349 -0.9311 29 1 -0.3633 -1.0238 0.0889 30 1 -0.3634 0.5889 0.8421 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.2506 3.1093 -1.1656 34 1 1.7324 1.6596 -2.0590 35 1 3.3520 2.6359 -3.5221 36 1 4.8024 3.3256 -2.7192 37 1 6.1492 1.3966 -3.2423 38 1 5.0879 1.4437 -4.6910 39 1 5.1328 -0.7881 -3.1546 40 1 3.5694 -0.1779 -3.7735 41 1 3.3009 -0.2155 2.0496 42 1 2.8981 -1.3517 4.1888 43 1 1.2628 -0.4463 5.7879 44 1 0.0246 1.6090 5.2685 45 1 -2.5549 6.1612 3.7238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053427785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:03 Heat of formation + Delta-G solvation = -53.388774 kcal Electronic energy + Delta-G solvation = -27093.261689 eV Core-core repulsion = 23394.952964 eV Total energy + Delta-G solvation = -3698.308725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.14290 -39.18094 -37.46713 -35.49706 -32.76632 -32.42566 -31.69067 -30.45145 -30.28698 -29.19780 -25.88742 -25.76736 -23.57217 -22.54305 -21.91585 -21.87937 -21.19361 -19.17007 -17.79757 -17.17591 -16.60888 -16.28304 -16.16886 -15.87780 -15.11213 -15.00883 -14.47529 -14.40385 -13.78547 -13.61586 -13.60110 -13.53889 -13.08442 -12.93524 -12.75404 -12.35435 -12.18425 -12.02605 -11.85492 -11.64912 -11.61779 -11.41066 -11.25086 -11.18441 -11.12219 -11.04401 -11.01684 -10.72331 -10.35097 -9.80200 -9.75713 -9.50886 -9.33006 -8.74061 -8.50733 -8.36099 -8.10539 -6.53527 -6.48314 -4.18013 1.70736 2.02573 3.09140 3.13980 3.17996 3.23585 3.34522 3.41182 3.76486 4.03275 4.30379 4.37454 4.60204 4.68211 4.93867 4.96021 5.01621 5.06998 5.12034 5.28356 5.31720 5.44836 5.45768 5.47245 5.50250 5.59821 5.61757 5.64678 5.73684 5.77504 5.85725 5.93239 6.03835 6.06144 6.13677 6.18033 6.39887 6.52822 6.61877 6.83373 6.92158 6.95859 7.07906 7.15713 7.44116 7.59850 7.80225 8.15080 8.71885 8.98617 10.57793 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.003422 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.717188 B = 8179.657158 C = 9126.733963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.605 5.605 4 C 0.108 3.892 5 C 0.065 3.935 6 H 0.083 0.917 7 C -0.148 4.148 8 C -0.156 4.156 9 C 0.049 3.951 10 O -0.372 6.372 11 C 0.570 3.430 12 O -0.520 6.520 13 C -0.154 4.154 14 C -0.069 4.069 15 C -0.177 4.177 16 C -0.083 4.083 17 C -0.151 4.151 18 C -0.049 4.049 19 S 0.095 5.905 20 C -0.564 4.564 21 H 0.093 0.907 22 C 0.080 3.920 23 N -0.861 5.861 24 Si 0.923 3.077 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.270 1.270 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.523 -12.053 -12.118 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.339 5.339 4 C -0.015 4.015 5 C 0.007 3.993 6 H 0.101 0.899 7 C -0.187 4.187 8 C -0.193 4.193 9 C -0.028 4.028 10 O -0.292 6.292 11 C 0.359 3.641 12 O -0.395 6.395 13 C -0.168 4.168 14 C -0.089 4.089 15 C -0.201 4.201 16 C -0.104 4.104 17 C -0.176 4.176 18 C -0.167 4.167 19 S 0.355 5.645 20 C -0.711 4.711 21 H 0.111 0.889 22 C -0.131 4.131 23 N -0.494 5.494 24 Si 0.748 3.252 25 H -0.194 1.194 26 H -0.206 1.206 27 H -0.195 1.195 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.156 0.844 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.244 -10.418 -13.094 19.117 hybrid contribution -0.452 -0.482 1.909 2.020 sum 8.793 -10.900 -11.185 17.923 Atomic orbital electron populations 1.22211 0.96217 1.01937 1.02634 1.21702 0.94035 0.82362 1.03648 1.47746 1.66062 1.14496 1.05561 1.21798 0.93884 0.99802 0.86048 1.23280 0.97329 0.81156 0.97561 0.89891 1.23115 1.00373 0.99256 0.95926 1.23249 0.99969 0.94911 1.01216 1.23354 0.97811 0.97417 0.84219 1.88470 1.88566 1.23111 1.29042 1.18352 0.76065 0.86026 0.83624 1.90783 1.46582 1.15137 1.87037 1.19140 1.03243 0.98753 0.95660 1.20859 0.98079 0.93215 0.96710 1.20662 1.02392 1.01655 0.95424 1.21062 0.95426 0.95562 0.98319 1.21399 1.02376 0.96305 0.97538 1.22852 0.97622 1.00708 0.95509 1.83928 1.45682 1.16766 1.18079 1.23461 1.29543 1.20633 0.97478 0.88942 1.25102 0.95201 0.94465 0.98293 1.69966 1.31935 1.17317 1.30138 0.86135 0.79115 0.78238 0.81703 1.19432 1.20558 1.19471 0.92943 0.91997 0.91615 0.90091 0.89715 0.88507 0.90663 0.90188 0.89734 0.90463 0.90061 0.90054 0.92418 0.86568 0.86973 0.87003 0.84448 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.20 37.16 0.38 -2.01 16 2 C 0.11 1.44 5.61 -4.05 -0.02 1.42 16 3 N -0.61 -9.74 2.45 -174.95 -0.43 -10.17 16 4 C 0.11 1.48 5.06 -4.04 -0.02 1.46 16 5 C 0.07 0.78 3.78 -26.00 -0.10 0.68 16 6 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 7 C -0.15 -1.31 6.55 -24.78 -0.16 -1.47 16 8 C -0.16 -1.14 7.16 -24.48 -0.18 -1.31 16 9 C 0.05 0.41 7.78 38.19 0.30 0.70 16 10 O -0.37 -4.40 9.61 -35.23 -0.34 -4.74 16 11 C 0.57 11.55 6.46 -12.52 -0.08 11.47 16 12 O -0.52 -12.30 15.58 5.27 0.08 -12.22 16 13 C -0.15 -3.14 4.88 -104.75 -0.51 -3.65 16 14 C -0.07 -1.16 7.60 -39.20 -0.30 -1.46 16 15 C -0.18 -2.81 10.02 -39.58 -0.40 -3.20 16 16 C -0.08 -1.42 10.03 -39.55 -0.40 -1.82 16 17 C -0.15 -3.16 9.20 -39.38 -0.36 -3.52 16 18 C -0.05 -1.12 6.14 -38.39 -0.24 -1.35 16 19 S 0.10 2.55 19.93 -107.50 -2.14 0.40 16 20 C -0.56 -15.59 8.98 30.94 0.28 -15.31 16 21 H 0.09 2.42 5.03 -52.48 -0.26 2.16 16 22 C 0.08 2.20 5.49 -17.46 -0.10 2.10 16 23 N -0.86 -24.78 13.22 55.49 0.73 -24.05 16 24 Si 0.92 20.71 29.55 -169.99 -5.02 15.69 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.13 8.02 -51.93 -0.42 0.72 16 31 H 0.08 0.97 6.97 -51.93 -0.36 0.61 16 32 H 0.08 1.17 4.46 -51.92 -0.23 0.94 16 33 H 0.10 1.47 7.27 -51.93 -0.38 1.09 16 34 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.08 0.63 7.85 -51.93 -0.41 0.23 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.12 1.71 7.29 -52.49 -0.38 1.33 16 42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 44 H 0.14 3.00 5.09 -52.49 -0.27 2.73 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -32.27 376.22 -9.84 -42.11 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.49 Total: 4.58 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -1.90 Total: -17.28 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.30 Total: -34.22 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.26 Total: -16.96 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.14 Total: 0.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.27 -9.84 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053427785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.275 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds