Wall clock time and date at job start Tue Mar 31 2020 18:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47214 * 2 1 4 4 C 1.46496 * 119.99986 * 264.47818 * 3 2 1 5 5 C 1.53003 * 109.47614 * 272.94369 * 4 3 2 6 6 H 1.08998 * 109.81678 * 301.88618 * 5 4 3 7 7 C 1.54386 * 109.90538 * 180.95616 * 5 4 3 8 8 C 1.55309 * 102.24786 * 219.08260 * 7 5 4 9 9 C 1.54949 * 100.94173 * 34.13296 * 8 7 5 10 10 O 1.43236 * 109.83151 * 62.77402 * 5 4 3 11 11 C 1.34781 * 120.00340 * 84.48443 * 3 2 1 12 12 O 1.21603 * 120.00212 * 185.56593 * 11 3 2 13 13 C 1.47426 * 119.99555 * 5.56144 * 11 3 2 14 14 C 1.39678 * 120.21734 * 54.24513 * 13 11 3 15 15 C 1.37814 * 119.93960 * 179.67256 * 14 13 11 16 16 C 1.38657 * 120.37760 * 0.62860 * 15 14 13 17 17 C 1.37915 * 120.44253 * 359.67108 * 16 15 14 18 18 C 1.39113 * 120.04563 * 0.02562 * 17 16 15 19 19 S 1.76207 * 120.18671 * 180.02562 * 18 17 16 20 20 C 1.76201 * 100.00076 * 8.39550 * 19 18 17 21 21 H 1.08003 * 119.99794 * 5.52320 * 20 19 18 22 22 C 1.38803 * 119.99632 * 185.52722 * 20 19 18 23 23 N 1.31550 * 120.00066 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99548 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47385 * 59.99729 * 24 22 20 26 26 H 1.48500 * 109.47227 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47064 * 299.99637 * 24 22 20 28 28 H 1.09001 * 109.46696 * 64.96448 * 1 2 3 29 29 H 1.09002 * 109.47070 * 184.96126 * 1 2 3 30 30 H 1.08996 * 109.47303 * 304.96689 * 1 2 3 31 31 H 1.09001 * 109.47113 * 239.99396 * 2 1 3 32 32 H 1.09009 * 109.46912 * 119.99593 * 2 1 3 33 33 H 1.09007 * 109.47339 * 152.93836 * 4 3 2 34 34 H 1.09003 * 109.46833 * 32.94255 * 4 3 2 35 35 H 1.08995 * 110.84941 * 337.27357 * 7 5 4 36 36 H 1.08998 * 110.84260 * 100.89772 * 7 5 4 37 37 H 1.08993 * 111.12472 * 276.21214 * 8 7 5 38 38 H 1.08999 * 111.15695 * 152.06324 * 8 7 5 39 39 H 1.08998 * 110.31085 * 204.63336 * 9 8 7 40 40 H 1.09002 * 110.39051 * 82.50899 * 9 8 7 41 41 H 1.07996 * 120.03013 * 359.97438 * 14 13 11 42 42 H 1.07992 * 119.81315 * 180.31747 * 15 14 13 43 43 H 1.08000 * 119.78208 * 179.69634 * 16 15 14 44 44 H 1.07995 * 119.97750 * 180.02562 * 17 16 15 45 45 H 0.97009 * 119.99693 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3776 2.0311 -1.2628 5 6 3.8365 1.7177 -1.6008 6 1 4.4842 2.0570 -0.7924 7 6 4.2329 2.4179 -2.9184 8 6 5.1229 1.3467 -3.6059 9 6 4.4278 0.0430 -3.1390 10 8 3.9985 0.3077 -1.7941 11 6 2.1372 2.0540 1.1618 12 8 2.4451 3.2304 1.1544 13 6 1.8939 1.3637 2.4415 14 6 2.5855 0.1899 2.7496 15 6 2.3585 -0.4471 3.9505 16 6 1.4367 0.0633 4.8517 17 6 0.7406 1.2179 4.5609 18 6 0.9601 1.8789 3.3567 19 16 0.0733 3.3546 2.9816 20 6 -0.7138 3.6410 4.5318 21 1 -0.4821 3.0129 5.3793 22 6 -1.6317 4.6738 4.6637 23 7 -1.9136 5.4391 3.6315 24 14 -2.4656 4.9779 6.3074 25 1 -1.4376 5.2780 7.3360 26 1 -3.3944 6.1302 6.1856 27 1 -3.2275 3.7676 6.7073 28 1 -0.3633 0.4349 -0.9311 29 1 -0.3633 -1.0238 0.0889 30 1 -0.3634 0.5889 0.8421 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.2506 3.1093 -1.1656 34 1 1.7324 1.6596 -2.0590 35 1 3.3520 2.6359 -3.5221 36 1 4.8024 3.3256 -2.7192 37 1 6.1492 1.3966 -3.2423 38 1 5.0879 1.4437 -4.6910 39 1 5.1328 -0.7881 -3.1546 40 1 3.5694 -0.1779 -3.7735 41 1 3.3009 -0.2155 2.0496 42 1 2.8981 -1.3517 4.1888 43 1 1.2628 -0.4463 5.7879 44 1 0.0246 1.6090 5.2685 45 1 -2.5549 6.1612 3.7238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053427785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:02 Heat of formation + Delta-G solvation = -72.645802 kcal Electronic energy + Delta-G solvation = -27094.096737 eV Core-core repulsion = 23394.952964 eV Total energy + Delta-G solvation = -3699.143773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43846 -40.23303 -38.96010 -36.89899 -34.80120 -33.31381 -32.71186 -31.92801 -31.75464 -30.28206 -27.89909 -26.86359 -24.90305 -23.81483 -23.39368 -22.63683 -22.20267 -20.70877 -19.55884 -18.37259 -17.79945 -17.66645 -17.34928 -17.06982 -16.98300 -16.35013 -15.93552 -15.53706 -15.20912 -14.93797 -14.73066 -14.61916 -14.50871 -14.38356 -14.04954 -13.74795 -13.48846 -13.26948 -13.09195 -12.97650 -12.91128 -12.74166 -12.64425 -12.57045 -12.32895 -12.10211 -12.05184 -11.92667 -11.72194 -11.50374 -11.36405 -10.97813 -10.64751 -10.48633 -10.32245 -9.81837 -9.46608 -8.50415 -8.49649 -6.27770 0.18427 0.50448 1.24971 1.38173 1.43380 1.59168 1.73021 2.06215 2.18931 2.81550 2.92883 2.94763 3.16913 3.57111 3.63129 3.81210 3.97839 4.03559 4.12281 4.17884 4.25665 4.26124 4.38770 4.43511 4.54639 4.62024 4.62868 4.68247 4.75241 4.83014 4.84951 4.86795 4.95559 4.98118 4.99391 5.06060 5.10226 5.27108 5.34499 5.35491 5.47483 5.52944 5.65880 5.68076 6.07132 6.11591 6.14273 6.40832 6.91874 7.21497 8.58200 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.003422 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.717188 B = 8179.657158 C = 9126.733963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.106 3.894 3 N -0.597 5.597 4 C 0.104 3.896 5 C 0.074 3.926 6 H 0.055 0.945 7 C -0.147 4.147 8 C -0.147 4.147 9 C 0.041 3.959 10 O -0.388 6.388 11 C 0.561 3.439 12 O -0.569 6.569 13 C -0.158 4.158 14 C -0.067 4.067 15 C -0.146 4.146 16 C -0.076 4.076 17 C -0.167 4.167 18 C -0.066 4.066 19 S -0.011 6.011 20 C -0.573 4.573 21 H 0.098 0.902 22 C 0.022 3.978 23 N -0.905 5.905 24 Si 0.998 3.002 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.257 1.257 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.023 0.977 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.147 0.853 42 H 0.165 0.835 43 H 0.152 0.848 44 H 0.121 0.879 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.063 -16.067 -12.200 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.016 4.016 3 N -0.328 5.328 4 C -0.019 4.019 5 C 0.015 3.985 6 H 0.073 0.927 7 C -0.185 4.185 8 C -0.185 4.185 9 C -0.035 4.035 10 O -0.308 6.308 11 C 0.351 3.649 12 O -0.449 6.449 13 C -0.170 4.170 14 C -0.086 4.086 15 C -0.168 4.168 16 C -0.096 4.096 17 C -0.192 4.192 18 C -0.183 4.183 19 S 0.245 5.755 20 C -0.720 4.720 21 H 0.116 0.884 22 C -0.183 4.183 23 N -0.540 5.540 24 Si 0.818 3.182 25 H -0.188 1.188 26 H -0.198 1.198 27 H -0.181 1.181 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.165 0.835 42 H 0.183 0.817 43 H 0.170 0.830 44 H 0.139 0.861 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.832 -14.549 -13.203 22.435 hybrid contribution -0.728 0.456 1.837 2.028 sum 10.104 -14.093 -11.367 20.734 Atomic orbital electron populations 1.22173 0.96414 1.02845 1.01078 1.21891 0.93726 0.80929 1.05043 1.47834 1.64526 1.15291 1.05172 1.21983 0.96003 0.98459 0.85467 1.23012 0.95012 0.82117 0.98358 0.92696 1.23125 1.01288 0.99559 0.94554 1.23242 0.99386 0.93421 1.02421 1.23604 0.98790 0.98273 0.82790 1.88429 1.88724 1.22404 1.31259 1.18540 0.75880 0.85627 0.84897 1.90752 1.49178 1.17139 1.87800 1.19425 1.02603 0.99664 0.95328 1.21257 0.97631 0.91720 0.98020 1.21292 1.00109 1.01992 0.93442 1.21489 0.94250 0.93768 1.00092 1.21450 1.03191 0.97964 0.96643 1.22685 0.98751 0.99518 0.97345 1.84032 1.49420 1.22099 1.19965 1.23709 1.29687 1.21103 0.97462 0.88439 1.26182 0.95809 0.93987 1.02352 1.70121 1.33060 1.18236 1.32578 0.85012 0.78047 0.78583 0.76523 1.18757 1.19821 1.18109 0.92450 0.89271 0.95772 0.87373 0.89384 0.91000 0.88274 0.89073 0.89780 0.90436 0.87745 0.88638 0.91116 0.83500 0.81735 0.83041 0.86123 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.51 10.20 71.98 0.73 -3.78 16 2 C 0.11 2.70 5.61 86.38 0.48 3.19 16 3 N -0.60 -19.39 2.45 -825.68 -2.02 -21.42 16 4 C 0.10 2.87 5.06 86.38 0.44 3.31 16 5 C 0.07 1.73 3.78 31.07 0.12 1.85 16 6 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 7 C -0.15 -2.42 6.55 31.86 0.21 -2.21 16 8 C -0.15 -1.76 7.16 32.05 0.23 -1.53 16 9 C 0.04 0.56 7.78 72.65 0.56 1.13 16 10 O -0.39 -8.31 9.61 -148.98 -1.43 -9.74 16 11 C 0.56 23.75 6.46 86.66 0.56 24.31 16 12 O -0.57 -29.08 15.58 -4.04 -0.06 -29.15 16 13 C -0.16 -6.49 4.88 -19.95 -0.10 -6.59 16 14 C -0.07 -2.05 7.60 22.52 0.17 -1.88 16 15 C -0.15 -3.87 10.02 22.27 0.22 -3.65 16 16 C -0.08 -2.35 10.03 22.29 0.22 -2.12 16 17 C -0.17 -7.06 9.20 22.40 0.21 -6.85 16 18 C -0.07 -3.17 6.14 23.04 0.14 -3.03 16 19 S -0.01 -0.62 19.93 -56.49 -1.13 -1.75 16 20 C -0.57 -33.58 8.98 67.96 0.61 -32.97 16 21 H 0.10 5.38 5.03 -2.91 -0.01 5.36 16 22 C 0.02 1.29 5.49 84.87 0.47 1.75 16 23 N -0.91 -55.33 13.22 21.64 0.29 -55.04 16 24 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.02 0.85 8.02 -2.39 -0.02 0.83 16 31 H 0.11 2.24 6.97 -2.39 -0.02 2.22 16 32 H 0.09 2.19 4.46 -2.38 -0.01 2.18 16 33 H 0.07 2.36 7.27 -2.38 -0.02 2.34 16 34 H 0.10 2.23 8.09 -2.39 -0.02 2.21 16 35 H 0.09 1.30 7.85 -2.39 -0.02 1.28 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.15 3.69 7.29 -2.91 -0.02 3.66 16 42 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 44 H 0.12 5.44 5.09 -2.91 -0.01 5.42 16 45 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -78.96 376.22 3.94 -75.02 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 1.00 Total: 25.25 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 5.28 Total: -29.07 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.74 Total: -76.46 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.49 Total: -38.88 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -1.13 Total: -1.75 kcal Total: -78.96 3.94 -75.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053427785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.375 kcal (2) G-P(sol) polarization free energy of solvation -78.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds