Wall clock time and date at job start Tue Mar 31 2020 18:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34770 * 120.00029 * 2 1 4 4 O 1.21585 * 120.00183 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99780 * 180.02562 * 3 2 1 6 6 N 1.40098 * 120.00429 * 359.97438 * 5 3 2 7 7 C 1.34773 * 120.00292 * 180.02562 * 6 5 3 8 8 O 1.21718 * 120.00022 * 359.97438 * 7 6 5 9 9 C 1.46252 * 119.99979 * 180.02562 * 7 6 5 10 10 C 1.35021 * 120.00194 * 173.61707 * 9 7 6 11 11 C 1.46971 * 119.99669 * 346.90829 * 10 9 7 12 12 C 1.40028 * 120.08246 * 316.49374 * 11 10 9 13 13 C 1.37642 * 120.00110 * 179.69502 * 12 11 10 14 14 C 1.39054 * 120.16190 * 0.60474 * 13 12 11 15 15 O 1.35619 * 119.92512 * 179.69873 * 14 13 12 16 16 C 1.34767 * 116.99580 * 355.41172 * 15 14 13 17 17 H 1.07997 * 119.99573 * 5.02369 * 16 15 14 18 18 C 1.38704 * 119.99953 * 185.02206 * 16 15 14 19 19 N 1.31524 * 119.99662 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47344 * 90.00080 * 20 18 16 22 22 H 1.48497 * 109.47027 * 210.00330 * 20 18 16 23 23 H 1.48497 * 109.47086 * 330.00061 * 20 18 16 24 24 C 1.39625 * 120.15812 * 359.67193 * 14 13 12 25 25 O 1.35954 * 120.00287 * 180.02562 * 24 14 13 26 26 C 1.42891 * 117.00186 * 179.97438 * 25 24 14 27 27 C 1.38076 * 119.99799 * 0.02562 * 24 14 13 28 28 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46856 * 300.00064 * 1 2 3 30 30 H 1.08999 * 109.47233 * 59.99632 * 1 2 3 31 31 H 0.96997 * 119.99610 * 180.02562 * 2 1 3 32 32 H 0.97011 * 119.99814 * 180.02562 * 5 3 2 33 33 H 0.97003 * 119.99520 * 0.02562 * 6 5 3 34 34 H 1.07999 * 120.00183 * 353.88380 * 9 7 6 35 35 H 1.07996 * 120.00575 * 166.91692 * 10 9 7 36 36 H 1.08005 * 119.99853 * 359.97438 * 12 11 10 37 37 H 1.08002 * 119.91771 * 180.28241 * 13 12 11 38 38 H 0.97003 * 119.99468 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.47202 * 300.00028 * 26 25 24 40 40 H 1.09006 * 109.47551 * 59.99503 * 26 25 24 41 41 H 1.09004 * 109.47300 * 179.97438 * 26 25 24 42 42 H 1.07998 * 120.08268 * 179.97438 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 -0.0005 6 7 4.1872 -0.0462 -0.0005 7 6 5.5349 -0.0462 -0.0005 8 8 6.1435 1.0079 -0.0010 9 6 6.2662 -1.3128 -0.0011 10 6 7.6101 -1.3164 -0.1311 11 6 8.3104 -0.0965 -0.5567 12 6 7.7989 0.6766 -1.6063 13 6 8.4528 1.8222 -1.9994 14 6 9.6284 2.2084 -1.3650 15 8 10.2719 3.3348 -1.7603 16 6 9.7726 3.9803 -2.8327 17 1 8.8525 3.6424 -3.2861 18 6 10.4403 5.0786 -3.3541 19 7 11.5611 5.4896 -2.8020 20 14 9.7478 5.9737 -4.8401 21 1 8.8371 7.0554 -4.3864 22 1 10.8614 6.5618 -5.6270 23 1 8.9943 5.0156 -5.6883 24 6 10.1475 1.4395 -0.3215 25 8 11.2969 1.8202 0.2969 26 6 11.7702 0.9868 1.3566 27 6 9.4937 0.2924 0.0823 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.9499 -0.8401 -0.0004 32 1 3.9717 2.0072 -0.0001 33 1 3.7021 -0.8862 -0.0005 34 1 5.7308 -2.2455 0.0981 35 1 8.1704 -2.2158 0.0775 36 1 6.8888 0.3763 -2.1043 37 1 8.0545 2.4199 -2.8060 38 1 12.0282 6.2575 -3.1669 39 1 11.0173 0.9363 2.1432 40 1 11.9622 -0.0153 0.9728 41 1 12.6924 1.4030 1.7621 42 1 9.8942 -0.3036 0.8890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056371139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:09 Heat of formation + Delta-G solvation = -20.218870 kcal Electronic energy + Delta-G solvation = -28247.740053 eV Core-core repulsion = 24004.576468 eV Total energy + Delta-G solvation = -4243.163585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.64742 -39.73818 -39.10623 -37.50353 -36.52101 -35.47167 -34.82794 -33.11119 -32.22031 -31.05825 -29.50591 -28.45317 -26.95738 -26.43001 -25.38271 -23.70168 -21.59670 -21.47307 -21.36234 -20.14874 -18.94840 -18.08527 -17.98428 -17.26451 -16.30022 -16.16178 -15.94982 -15.45422 -15.20020 -15.08690 -14.84461 -14.77039 -14.46354 -14.22090 -13.81737 -13.70366 -13.43508 -13.40583 -13.30534 -12.81642 -12.60083 -12.32401 -11.70176 -11.56493 -11.45282 -11.31454 -11.07594 -10.93580 -10.81769 -10.65094 -10.51432 -10.37218 -9.75469 -9.59440 -9.44129 -9.23153 -8.73163 -8.40346 -7.77350 -6.71823 -6.46822 -3.98668 1.01311 1.78064 2.27475 2.56298 2.74955 2.82584 3.14613 3.15264 3.19807 3.41203 3.95837 4.08020 4.47929 4.58866 4.78795 4.92062 5.01836 5.07924 5.15980 5.17574 5.41101 5.44096 5.51761 5.59818 5.67891 5.77236 5.87806 5.96943 6.02470 6.18424 6.30819 6.34918 6.41169 6.55453 6.66072 6.97296 7.09918 7.24889 7.25424 7.39965 7.52255 7.65994 7.94884 8.11594 8.23784 8.41271 8.97286 9.68545 10.69840 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.003219 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.384860 B = 8696.789815 C =10928.300545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.751 5.751 3 C 0.710 3.290 4 O -0.576 6.576 5 N -0.529 5.529 6 N -0.538 5.538 7 C 0.543 3.457 8 O -0.502 6.502 9 C -0.265 4.265 10 C 0.042 3.958 11 C -0.167 4.167 12 C -0.011 4.011 13 C -0.223 4.223 14 C 0.154 3.846 15 O -0.154 6.154 16 C -0.388 4.388 17 H 0.095 0.905 18 C 0.040 3.960 19 N -0.851 5.851 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.266 1.266 24 C 0.040 3.960 25 O -0.305 6.305 26 C 0.032 3.968 27 C -0.133 4.133 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.393 0.607 32 H 0.445 0.555 33 H 0.413 0.587 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.272 0.728 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 -18.570 5.883 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.408 5.408 3 C 0.409 3.591 4 O -0.450 6.450 5 N -0.285 5.285 6 N -0.292 5.292 7 C 0.333 3.667 8 O -0.375 6.375 9 C -0.288 4.288 10 C 0.023 3.977 11 C -0.169 4.169 12 C -0.029 4.029 13 C -0.243 4.243 14 C 0.098 3.902 15 O -0.056 6.056 16 C -0.464 4.464 17 H 0.112 0.888 18 C -0.166 4.166 19 N -0.484 5.484 20 Si 0.767 3.233 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.004 4.004 25 O -0.219 6.219 26 C -0.064 4.064 27 C -0.152 4.152 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.227 0.773 32 H 0.292 0.708 33 H 0.253 0.747 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.150 0.850 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.703 -16.592 5.881 22.308 hybrid contribution -0.395 -0.440 -0.484 0.765 sum -14.098 -17.032 5.397 22.759 Atomic orbital electron populations 1.21448 0.77585 1.02224 1.02642 1.44917 1.08162 1.06800 1.80945 1.15716 0.80224 0.84736 0.78408 1.91037 1.64919 1.30360 1.58703 1.44518 1.02117 1.01663 1.80160 1.45076 1.05048 0.99604 1.79481 1.18704 0.79340 0.91520 0.77129 1.91062 1.65928 1.32791 1.47680 1.22258 0.95114 0.95219 1.16199 1.22333 0.93007 0.96561 0.85848 1.18014 0.97861 0.98684 1.02298 1.20508 0.95375 0.92641 0.94398 1.20724 0.97709 1.00178 1.05649 1.18838 0.91670 0.87331 0.92391 1.83990 1.48862 1.29882 1.42819 1.21458 1.08447 1.10923 1.05591 0.88793 1.25353 0.95568 0.96582 0.99050 1.70057 1.14761 1.24310 1.39299 0.85688 0.78473 0.79506 0.79665 1.19726 1.20172 1.19056 1.17945 0.89509 0.95809 0.97178 1.86227 1.38028 1.49797 1.47841 1.22858 0.99302 0.94860 0.89334 1.20671 0.96227 0.96874 1.01455 0.90440 0.92090 0.92044 0.77326 0.70826 0.74684 0.85496 0.85521 0.88213 0.85043 0.91850 0.93728 0.93698 0.89207 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.64 10.70 59.85 0.64 1.28 16 2 N -0.75 -5.70 5.68 -72.07 -0.41 -6.11 16 3 C 0.71 8.66 8.68 -86.92 -0.75 7.90 16 4 O -0.58 -9.44 17.18 5.29 0.09 -9.35 16 5 N -0.53 -6.39 6.26 27.63 0.17 -6.21 16 6 N -0.54 -5.19 6.25 30.16 0.19 -5.00 16 7 C 0.54 6.98 6.90 -13.04 -0.09 6.89 16 8 O -0.50 -9.00 12.19 5.17 0.06 -8.94 16 9 C -0.27 -2.69 9.88 -37.51 -0.37 -3.06 16 10 C 0.04 0.51 9.79 -37.19 -0.36 0.14 16 11 C -0.17 -2.88 4.49 -105.04 -0.47 -3.35 16 12 C -0.01 -0.20 6.67 -39.13 -0.26 -0.46 16 13 C -0.22 -5.08 9.14 -39.50 -0.36 -5.44 16 14 C 0.15 3.92 6.67 -38.76 -0.26 3.66 16 15 O -0.15 -4.58 9.52 -13.98 -0.13 -4.71 16 16 C -0.39 -11.11 9.48 30.90 0.29 -10.82 16 17 H 0.09 2.48 5.18 -52.49 -0.27 2.21 16 18 C 0.04 1.12 5.49 -17.51 -0.10 1.03 16 19 N -0.85 -25.38 13.67 55.48 0.76 -24.62 16 20 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C 0.04 0.91 6.70 -39.12 -0.26 0.65 16 25 O -0.30 -6.82 10.28 -34.21 -0.35 -7.17 16 26 C 0.03 0.50 9.81 101.05 0.99 1.49 16 27 C -0.13 -2.45 8.77 -38.99 -0.34 -2.79 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.39 1.72 6.75 -40.82 -0.28 1.44 16 32 H 0.45 6.28 8.10 -182.59 -1.48 4.80 16 33 H 0.41 2.23 6.68 -182.60 -1.22 1.01 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.10 1.73 7.11 -52.48 -0.37 1.36 16 37 H 0.13 3.00 5.61 -52.49 -0.29 2.70 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 40 H 0.04 0.59 7.66 -51.93 -0.40 0.19 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.12 1.76 6.28 -52.49 -0.33 1.43 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -38.46 363.10 -7.59 -46.05 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.71 Total: 7.64 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.71 Total: -2.87 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.71 Total: -41.95 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.33 Total: -30.18 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.46 -7.59 -46.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056371139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.827 kcal (2) G-P(sol) polarization free energy of solvation -38.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds