Wall clock time and date at job start Tue Mar 31 2020 18:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34770 * 120.00029 * 2 1 4 4 O 1.21585 * 120.00183 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99780 * 180.02562 * 3 2 1 6 6 N 1.40098 * 120.00429 * 359.97438 * 5 3 2 7 7 C 1.34773 * 120.00292 * 180.02562 * 6 5 3 8 8 O 1.21718 * 120.00022 * 359.97438 * 7 6 5 9 9 C 1.46252 * 119.99979 * 180.02562 * 7 6 5 10 10 C 1.35021 * 120.00194 * 173.61707 * 9 7 6 11 11 C 1.46971 * 119.99669 * 346.90829 * 10 9 7 12 12 C 1.40028 * 120.08246 * 316.49374 * 11 10 9 13 13 C 1.37642 * 120.00110 * 179.69502 * 12 11 10 14 14 C 1.39054 * 120.16190 * 0.60474 * 13 12 11 15 15 O 1.35619 * 119.92512 * 179.69873 * 14 13 12 16 16 C 1.34767 * 116.99580 * 355.41172 * 15 14 13 17 17 H 1.07997 * 119.99573 * 5.02369 * 16 15 14 18 18 C 1.38704 * 119.99953 * 185.02206 * 16 15 14 19 19 N 1.31524 * 119.99662 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47344 * 90.00080 * 20 18 16 22 22 H 1.48497 * 109.47027 * 210.00330 * 20 18 16 23 23 H 1.48497 * 109.47086 * 330.00061 * 20 18 16 24 24 C 1.39625 * 120.15812 * 359.67193 * 14 13 12 25 25 O 1.35954 * 120.00287 * 180.02562 * 24 14 13 26 26 C 1.42891 * 117.00186 * 179.97438 * 25 24 14 27 27 C 1.38076 * 119.99799 * 0.02562 * 24 14 13 28 28 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46856 * 300.00064 * 1 2 3 30 30 H 1.08999 * 109.47233 * 59.99632 * 1 2 3 31 31 H 0.96997 * 119.99610 * 180.02562 * 2 1 3 32 32 H 0.97011 * 119.99814 * 180.02562 * 5 3 2 33 33 H 0.97003 * 119.99520 * 0.02562 * 6 5 3 34 34 H 1.07999 * 120.00183 * 353.88380 * 9 7 6 35 35 H 1.07996 * 120.00575 * 166.91692 * 10 9 7 36 36 H 1.08005 * 119.99853 * 359.97438 * 12 11 10 37 37 H 1.08002 * 119.91771 * 180.28241 * 13 12 11 38 38 H 0.97003 * 119.99468 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.47202 * 300.00028 * 26 25 24 40 40 H 1.09006 * 109.47551 * 59.99503 * 26 25 24 41 41 H 1.09004 * 109.47300 * 179.97438 * 26 25 24 42 42 H 1.07998 * 120.08268 * 179.97438 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 -0.0005 6 7 4.1872 -0.0462 -0.0005 7 6 5.5349 -0.0462 -0.0005 8 8 6.1435 1.0079 -0.0010 9 6 6.2662 -1.3128 -0.0011 10 6 7.6101 -1.3164 -0.1311 11 6 8.3104 -0.0965 -0.5567 12 6 7.7989 0.6766 -1.6063 13 6 8.4528 1.8222 -1.9994 14 6 9.6284 2.2084 -1.3650 15 8 10.2719 3.3348 -1.7603 16 6 9.7726 3.9803 -2.8327 17 1 8.8525 3.6424 -3.2861 18 6 10.4403 5.0786 -3.3541 19 7 11.5611 5.4896 -2.8020 20 14 9.7478 5.9737 -4.8401 21 1 8.8371 7.0554 -4.3864 22 1 10.8614 6.5618 -5.6270 23 1 8.9943 5.0156 -5.6883 24 6 10.1475 1.4395 -0.3215 25 8 11.2969 1.8202 0.2969 26 6 11.7702 0.9868 1.3566 27 6 9.4937 0.2924 0.0823 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.9499 -0.8401 -0.0004 32 1 3.9717 2.0072 -0.0001 33 1 3.7021 -0.8862 -0.0005 34 1 5.7308 -2.2455 0.0981 35 1 8.1704 -2.2158 0.0775 36 1 6.8888 0.3763 -2.1043 37 1 8.0545 2.4199 -2.8060 38 1 12.0282 6.2575 -3.1669 39 1 11.0173 0.9363 2.1432 40 1 11.9622 -0.0153 0.9728 41 1 12.6924 1.4030 1.7621 42 1 9.8942 -0.3036 0.8890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056371139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:08 Heat of formation + Delta-G solvation = -53.009397 kcal Electronic energy + Delta-G solvation = -28249.161957 eV Core-core repulsion = 24004.576468 eV Total energy + Delta-G solvation = -4244.585489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67199 -41.19951 -40.33467 -39.22719 -37.91311 -36.68955 -35.61182 -34.55995 -33.93934 -32.15376 -31.10044 -29.86663 -27.82206 -27.55535 -27.29573 -24.90432 -23.20292 -22.86687 -22.25423 -21.15591 -20.02068 -19.87573 -19.35352 -18.57961 -17.75233 -17.33558 -16.91075 -16.78607 -16.59682 -16.41780 -16.33957 -15.85148 -15.57519 -15.49359 -15.26374 -15.19612 -15.03977 -14.64960 -14.14585 -14.05426 -13.91842 -13.48543 -13.08180 -13.04814 -12.82140 -12.76096 -12.53187 -12.42347 -12.18400 -12.05709 -11.85592 -11.79322 -11.35955 -10.94289 -10.82187 -10.36545 -10.28566 -9.49876 -9.21076 -8.47369 -8.36798 -6.10763 -0.09164 0.65130 0.85566 1.07414 1.31512 1.42831 1.49737 1.85504 2.04357 2.16423 2.39787 2.63743 2.85403 3.18739 3.45208 3.56582 3.94099 4.09704 4.16046 4.26025 4.36133 4.43941 4.45937 4.58860 4.64268 4.66101 4.72907 4.77397 4.96961 5.00024 5.10334 5.13863 5.20575 5.29231 5.44474 5.53405 5.57158 5.61700 5.82194 5.96497 6.08715 6.40100 6.68255 6.70961 6.96945 7.23102 7.44452 7.81419 8.76409 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.003219 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.384860 B = 8696.789815 C =10928.300545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.730 5.730 3 C 0.706 3.294 4 O -0.624 6.624 5 N -0.539 5.539 6 N -0.511 5.511 7 C 0.529 3.471 8 O -0.560 6.560 9 C -0.214 4.214 10 C 0.014 3.986 11 C -0.125 4.125 12 C -0.024 4.024 13 C -0.226 4.226 14 C 0.094 3.906 15 O -0.220 6.220 16 C -0.414 4.414 17 H 0.098 0.902 18 C -0.023 4.023 19 N -0.918 5.918 20 Si 1.019 2.981 21 H -0.265 1.265 22 H -0.266 1.266 23 H -0.252 1.252 24 C 0.026 3.974 25 O -0.349 6.349 26 C 0.022 3.978 27 C -0.133 4.133 28 H 0.122 0.878 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.412 0.588 32 H 0.434 0.566 33 H 0.437 0.563 34 H 0.194 0.806 35 H 0.181 0.819 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.236 -24.479 7.116 30.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.388 5.388 3 C 0.405 3.595 4 O -0.502 6.502 5 N -0.292 5.292 6 N -0.266 5.266 7 C 0.320 3.680 8 O -0.437 6.437 9 C -0.235 4.235 10 C -0.005 4.005 11 C -0.126 4.126 12 C -0.042 4.042 13 C -0.246 4.246 14 C 0.043 3.957 15 O -0.127 6.127 16 C -0.490 4.490 17 H 0.115 0.885 18 C -0.221 4.221 19 N -0.556 5.556 20 Si 0.838 3.162 21 H -0.191 1.191 22 H -0.191 1.191 23 H -0.176 1.176 24 C -0.019 4.019 25 O -0.265 6.265 26 C -0.073 4.073 27 C -0.152 4.152 28 H 0.140 0.860 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.249 0.751 32 H 0.277 0.723 33 H 0.282 0.718 34 H 0.211 0.789 35 H 0.198 0.802 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.957 -22.681 7.149 29.208 hybrid contribution 0.179 0.815 -0.511 0.979 sum -16.779 -21.866 6.638 28.350 Atomic orbital electron populations 1.21667 0.76328 1.04820 1.01600 1.44815 1.08845 1.06039 1.79112 1.15932 0.80051 0.85332 0.78207 1.91002 1.65848 1.32574 1.60791 1.44580 1.02320 1.02207 1.80087 1.44872 1.04482 0.99703 1.77532 1.19491 0.80063 0.92012 0.76397 1.91090 1.67334 1.35086 1.50161 1.22858 0.94273 0.95889 1.10519 1.22638 0.93814 0.95684 0.88357 1.18732 0.96186 0.98812 0.98849 1.20729 0.95954 0.91959 0.95577 1.20823 0.97254 1.01443 1.05041 1.19514 0.93300 0.88097 0.94786 1.83956 1.51277 1.32725 1.44724 1.21843 1.08954 1.11806 1.06366 0.88506 1.26619 0.95885 0.97226 1.02366 1.70207 1.17236 1.25946 1.42178 0.84596 0.77975 0.78112 0.75534 1.19053 1.19081 1.17605 1.18356 0.90127 0.96643 0.96737 1.86169 1.38253 1.52352 1.49713 1.23244 1.00345 0.95468 0.88195 1.21193 0.96348 0.95487 1.02146 0.85962 0.93114 0.93251 0.75068 0.72272 0.71783 0.78884 0.80185 0.86155 0.86764 0.91835 0.91926 0.91097 0.87620 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 10.70 127.77 1.37 2.27 16 2 N -0.73 -8.55 5.68 -500.21 -2.84 -11.39 16 3 C 0.71 16.04 8.68 179.06 1.55 17.60 16 4 O -0.62 -20.49 17.18 -3.98 -0.07 -20.56 16 5 N -0.54 -12.04 6.26 -184.75 -1.16 -13.20 16 6 N -0.51 -7.54 6.25 -176.70 -1.10 -8.65 16 7 C 0.53 11.16 6.90 86.33 0.60 11.76 16 8 O -0.56 -19.02 12.19 -4.41 -0.05 -19.07 16 9 C -0.21 -2.64 9.88 23.61 0.23 -2.40 16 10 C 0.01 0.24 9.79 23.82 0.23 0.48 16 11 C -0.12 -3.87 4.49 -20.13 -0.09 -3.96 16 12 C -0.02 -0.89 6.67 22.56 0.15 -0.74 16 13 C -0.23 -10.94 9.14 22.32 0.20 -10.74 16 14 C 0.09 5.19 6.67 22.80 0.15 5.34 16 15 O -0.22 -14.54 9.52 -6.69 -0.06 -14.60 16 16 C -0.41 -26.05 9.48 67.93 0.64 -25.41 16 17 H 0.10 5.67 5.18 -2.91 -0.02 5.65 16 18 C -0.02 -1.42 5.49 84.85 0.47 -0.96 16 19 N -0.92 -59.81 13.67 21.62 0.30 -59.52 16 20 Si 1.02 45.89 29.55 68.60 2.03 47.92 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 24 C 0.03 1.22 6.70 22.57 0.15 1.37 16 25 O -0.35 -16.37 10.28 -79.06 -0.81 -17.19 16 26 C 0.02 0.64 9.81 113.37 1.11 1.76 16 27 C -0.13 -4.60 8.77 22.65 0.20 -4.40 16 28 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.41 1.44 6.75 -92.71 -0.63 0.81 16 32 H 0.43 12.23 8.10 -213.31 -1.73 10.51 16 33 H 0.44 1.92 6.68 -213.32 -1.43 0.50 16 34 H 0.19 0.05 8.06 -2.91 -0.02 0.03 16 35 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.12 3.93 7.11 -2.91 -0.02 3.91 16 37 H 0.11 5.72 5.61 -2.91 -0.02 5.70 16 38 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 39 H 0.06 1.59 7.66 -2.39 -0.02 1.57 16 40 H 0.07 1.69 7.66 -2.38 -0.02 1.67 16 41 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.16 4.06 6.28 -2.91 -0.02 4.05 16 Total: -1.00 -101.07 363.10 0.54 -100.53 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -2.66 Total: 23.77 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 6.97 Total: -8.05 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -4.81 Total: -92.75 kcal Atomic # 8 Polarization: -70.43 SS G_CDS: -1.00 Total: -71.42 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -101.07 0.54 -100.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056371139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.523 kcal (2) G-P(sol) polarization free energy of solvation -101.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds