Wall clock time and date at job start Tue Mar 31 2020 18:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47261 * 2 1 4 4 C 1.46501 * 120.00519 * 270.00064 * 3 2 1 5 5 C 1.50701 * 109.47003 * 270.00017 * 4 3 2 6 6 H 1.07997 * 120.00131 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00145 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99827 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00343 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47115 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47299 * 120.00582 * 9 7 5 12 12 H 1.48504 * 109.47211 * 240.00419 * 9 7 5 13 13 C 1.34781 * 120.00090 * 89.99690 * 3 2 1 14 14 O 1.21282 * 120.00274 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99907 * 0.02562 * 13 3 2 16 16 O 1.42904 * 109.47417 * 179.97438 * 15 13 3 17 17 C 1.34916 * 117.00221 * 179.97438 * 16 15 13 18 18 O 1.21643 * 119.99997 * 359.97438 * 17 16 15 19 19 C 1.46135 * 120.00139 * 180.02562 * 17 16 15 20 20 C 1.35006 * 119.99915 * 180.27982 * 19 17 16 21 21 C 1.47047 * 120.00128 * 179.72328 * 20 19 17 22 22 C 1.39924 * 120.18732 * 359.72060 * 21 20 19 23 23 C 1.37803 * 119.84690 * 179.76883 * 22 21 20 24 24 C 1.38495 * 120.24250 * 0.50947 * 23 22 21 25 25 C 1.38267 * 120.39153 * 359.73840 * 24 23 22 26 26 C 1.38233 * 120.14523 * 0.02562 * 25 24 23 27 27 F 1.35097 * 120.12024 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.46996 * 59.99839 * 1 2 3 29 29 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47252 * 300.00027 * 1 2 3 31 31 H 1.09004 * 109.47252 * 239.99973 * 2 1 3 32 32 H 1.09002 * 109.47258 * 119.99740 * 2 1 3 33 33 H 1.09002 * 109.46610 * 29.99658 * 4 3 2 34 34 H 1.08996 * 109.47382 * 149.99734 * 4 3 2 35 35 H 0.96998 * 119.99985 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47544 * 59.99581 * 15 13 3 37 37 H 1.09009 * 109.47109 * 299.99774 * 15 13 3 38 38 H 1.08002 * 119.99594 * 359.97438 * 19 17 16 39 39 H 1.08002 * 120.00430 * 359.71623 * 20 19 17 40 40 H 1.08006 * 120.07600 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.87761 * 180.25169 * 23 22 21 42 42 H 1.07995 * 119.80328 * 179.76711 * 24 23 22 43 43 H 1.08002 * 119.92575 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1492 2.3897 -2.8778 8 7 3.3492 3.1259 -3.6179 9 14 5.9136 2.0968 -3.4167 10 1 6.6012 1.2415 -2.4163 11 1 5.9216 1.4175 -4.7371 12 1 6.6206 3.3983 -3.5254 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1673 15 6 1.9922 1.3060 2.4723 16 8 2.3021 2.1813 3.5585 17 6 2.1302 1.6952 4.8053 18 8 1.7274 0.5585 4.9646 19 6 2.4268 2.5344 5.9642 20 6 2.2601 2.0460 7.2117 21 6 2.5643 2.8884 8.3779 22 6 3.0324 4.1949 8.1992 23 6 3.3108 4.9799 9.2970 24 6 3.1390 4.4768 10.5759 25 6 2.6819 3.1855 10.7640 26 6 2.3931 2.3856 9.6742 27 9 1.9471 1.1238 9.8586 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.6753 3.5165 -4.4438 36 1 2.6226 0.4187 2.5299 37 1 0.9442 1.0115 2.5302 38 1 2.7840 3.5438 5.8227 39 1 1.9032 1.0365 7.3533 40 1 3.1720 4.5883 7.2031 41 1 3.6682 5.9897 9.1597 42 1 3.3629 5.0969 11.4312 43 1 2.5503 2.8009 11.7646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060981126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:33 Heat of formation + Delta-G solvation = -120.678103 kcal Electronic energy + Delta-G solvation = -27114.573891 eV Core-core repulsion = 22847.134105 eV Total energy + Delta-G solvation = -4267.439785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.37678 -40.62679 -39.51924 -38.91560 -36.61762 -35.30352 -34.65072 -32.84431 -31.11615 -30.51498 -30.15693 -29.04340 -26.68088 -25.07591 -23.37854 -23.07153 -22.67077 -21.89936 -19.82100 -18.65359 -18.58360 -17.75539 -17.03135 -16.74192 -16.46261 -16.35246 -16.24856 -16.07458 -15.76380 -15.22736 -14.74822 -14.50690 -14.31157 -14.18123 -13.65767 -13.50485 -13.38522 -13.12899 -13.01212 -12.84127 -12.49151 -12.15308 -12.06068 -11.88821 -11.63413 -11.59895 -11.24364 -10.95114 -10.93170 -10.86138 -10.72560 -10.60115 -10.49576 -10.15191 -9.64687 -9.40942 -8.99298 -8.79052 -8.45606 -7.75236 -6.06431 -4.11145 -0.10614 0.67462 1.36533 2.48836 2.74023 3.20066 3.25834 3.29242 3.37065 3.41617 3.65408 3.83904 4.14112 4.22418 4.37510 4.43495 4.64847 4.71408 4.79725 4.86664 4.92132 5.16150 5.22534 5.28294 5.28932 5.34974 5.37969 5.50508 5.59431 5.62464 5.73898 5.79809 5.85427 6.00197 6.00861 6.19530 6.30182 6.34333 6.45352 6.99560 7.39379 7.47072 7.68170 7.89976 8.19972 8.29725 8.84428 8.99335 9.53913 11.01753 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.002022 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.055436 B =13841.544611 C =14836.679659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.048 3.952 16 O -0.319 6.319 17 C 0.495 3.505 18 O -0.513 6.513 19 C -0.173 4.173 20 C -0.018 4.018 21 C -0.108 4.108 22 C -0.071 4.071 23 C -0.131 4.131 24 C -0.078 4.078 25 C -0.158 4.158 26 C 0.122 3.878 27 F -0.131 7.131 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 -1.060 27.103 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.030 4.030 16 O -0.234 6.234 17 C 0.341 3.659 18 O -0.404 6.404 19 C -0.192 4.192 20 C -0.037 4.037 21 C -0.109 4.109 22 C -0.088 4.088 23 C -0.149 4.149 24 C -0.096 4.096 25 C -0.176 4.176 26 C 0.103 3.897 27 F -0.109 7.109 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.824 -0.721 26.910 27.190 hybrid contribution 0.800 -0.639 -0.440 1.114 sum -3.024 -1.360 26.470 26.677 Atomic orbital electron populations 1.22233 0.96535 1.01693 1.02408 1.21509 0.93756 0.83943 1.03039 1.48206 1.63793 1.13413 1.07129 1.19338 0.96491 0.93717 0.77584 1.21467 0.96849 1.31988 1.06287 0.92330 1.24943 0.97943 0.94892 0.96377 1.69942 1.35621 1.33404 1.14339 0.86425 0.84530 0.78072 0.78292 1.19793 1.20966 1.20842 1.19709 0.79687 0.87124 0.84284 1.90712 1.44565 1.17504 1.86739 1.22607 1.02687 0.92952 0.84707 1.86242 1.78453 1.44608 1.14051 1.21213 0.74839 0.85882 0.83919 1.90882 1.42904 1.19608 1.86966 1.22184 1.06142 1.01233 0.89604 1.22247 0.91881 0.99107 0.90425 1.18962 1.05024 0.95555 0.91343 1.21484 0.95210 0.91731 1.00408 1.21231 1.00809 1.00724 0.92108 1.21222 0.96159 0.94376 0.97880 1.21135 1.03110 0.95000 0.98403 1.17878 0.98463 0.80022 0.93332 1.91527 1.86402 1.37053 1.95947 0.91796 0.91898 0.93124 0.89422 0.91723 0.94613 0.93693 0.92732 0.88860 0.88926 0.83573 0.83964 0.83899 0.84621 0.84634 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.15 0.38 -1.91 16 2 C 0.10 1.62 5.93 -4.05 -0.02 1.60 16 3 N -0.59 -12.50 2.46 -175.06 -0.43 -12.93 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.51 10.85 7.75 -10.98 -0.09 10.76 16 14 O -0.52 -13.44 16.08 -14.35 -0.23 -13.67 16 15 C 0.05 0.81 4.41 36.00 0.16 0.96 16 16 O -0.32 -5.41 9.66 -47.85 -0.46 -5.87 16 17 C 0.50 7.20 7.87 33.90 0.27 7.47 16 18 O -0.51 -8.22 16.00 -19.38 -0.31 -8.53 16 19 C -0.17 -1.90 9.53 -37.56 -0.36 -2.25 16 20 C -0.02 -0.18 9.26 -37.16 -0.34 -0.52 16 21 C -0.11 -0.93 5.87 -105.00 -0.62 -1.55 16 22 C -0.07 -0.49 9.41 -39.11 -0.37 -0.86 16 23 C -0.13 -0.71 10.03 -39.65 -0.40 -1.11 16 24 C -0.08 -0.39 10.04 -39.48 -0.40 -0.79 16 25 C -0.16 -0.98 10.01 -39.57 -0.40 -1.38 16 26 C 0.12 1.03 7.30 -38.89 -0.28 0.75 16 27 F -0.13 -1.26 16.62 2.25 0.04 -1.22 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 31 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 32 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 33 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.09 1.41 7.39 -51.93 -0.38 1.03 16 37 H 0.09 1.35 7.17 -51.92 -0.37 0.97 16 38 H 0.15 1.30 6.08 -52.49 -0.32 0.98 16 39 H 0.14 1.50 7.20 -52.49 -0.38 1.12 16 40 H 0.14 0.81 6.17 -52.48 -0.32 0.49 16 41 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 42 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 43 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -35.11 380.41 -8.23 -43.34 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.37 Total: -1.97 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -2.91 Total: 3.99 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.31 Total: -38.62 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -1.00 Total: -28.07 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.11 -8.23 -43.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060981126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.338 kcal (2) G-P(sol) polarization free energy of solvation -35.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds