Wall clock time and date at job start Tue Mar 31 2020 18:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47261 * 2 1 4 4 C 1.46501 * 120.00519 * 270.00064 * 3 2 1 5 5 C 1.50701 * 109.47003 * 270.00017 * 4 3 2 6 6 H 1.07997 * 120.00131 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00145 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99827 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00343 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47115 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47299 * 120.00582 * 9 7 5 12 12 H 1.48504 * 109.47211 * 240.00419 * 9 7 5 13 13 C 1.34781 * 120.00090 * 89.99690 * 3 2 1 14 14 O 1.21282 * 120.00274 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99907 * 0.02562 * 13 3 2 16 16 O 1.42904 * 109.47417 * 179.97438 * 15 13 3 17 17 C 1.34916 * 117.00221 * 179.97438 * 16 15 13 18 18 O 1.21643 * 119.99997 * 359.97438 * 17 16 15 19 19 C 1.46135 * 120.00139 * 180.02562 * 17 16 15 20 20 C 1.35006 * 119.99915 * 180.27982 * 19 17 16 21 21 C 1.47047 * 120.00128 * 179.72328 * 20 19 17 22 22 C 1.39924 * 120.18732 * 359.72060 * 21 20 19 23 23 C 1.37803 * 119.84690 * 179.76883 * 22 21 20 24 24 C 1.38495 * 120.24250 * 0.50947 * 23 22 21 25 25 C 1.38267 * 120.39153 * 359.73840 * 24 23 22 26 26 C 1.38233 * 120.14523 * 0.02562 * 25 24 23 27 27 F 1.35097 * 120.12024 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.46996 * 59.99839 * 1 2 3 29 29 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47252 * 300.00027 * 1 2 3 31 31 H 1.09004 * 109.47252 * 239.99973 * 2 1 3 32 32 H 1.09002 * 109.47258 * 119.99740 * 2 1 3 33 33 H 1.09002 * 109.46610 * 29.99658 * 4 3 2 34 34 H 1.08996 * 109.47382 * 149.99734 * 4 3 2 35 35 H 0.96998 * 119.99985 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47544 * 59.99581 * 15 13 3 37 37 H 1.09009 * 109.47109 * 299.99774 * 15 13 3 38 38 H 1.08002 * 119.99594 * 359.97438 * 19 17 16 39 39 H 1.08002 * 120.00430 * 359.71623 * 20 19 17 40 40 H 1.08006 * 120.07600 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.87761 * 180.25169 * 23 22 21 42 42 H 1.07995 * 119.80328 * 179.76711 * 24 23 22 43 43 H 1.08002 * 119.92575 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1492 2.3897 -2.8778 8 7 3.3492 3.1259 -3.6179 9 14 5.9136 2.0968 -3.4167 10 1 6.6012 1.2415 -2.4163 11 1 5.9216 1.4175 -4.7371 12 1 6.6206 3.3983 -3.5254 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1673 15 6 1.9922 1.3060 2.4723 16 8 2.3021 2.1813 3.5585 17 6 2.1302 1.6952 4.8053 18 8 1.7274 0.5585 4.9646 19 6 2.4268 2.5344 5.9642 20 6 2.2601 2.0460 7.2117 21 6 2.5643 2.8884 8.3779 22 6 3.0324 4.1949 8.1992 23 6 3.3108 4.9799 9.2970 24 6 3.1390 4.4768 10.5759 25 6 2.6819 3.1855 10.7640 26 6 2.3931 2.3856 9.6742 27 9 1.9471 1.1238 9.8586 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.6753 3.5165 -4.4438 36 1 2.6226 0.4187 2.5299 37 1 0.9442 1.0115 2.5302 38 1 2.7840 3.5438 5.8227 39 1 1.9032 1.0365 7.3533 40 1 3.1720 4.5883 7.2031 41 1 3.6682 5.9897 9.1597 42 1 3.3629 5.0969 11.4312 43 1 2.5503 2.8009 11.7646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060981126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:32 Heat of formation + Delta-G solvation = -139.905424 kcal Electronic energy + Delta-G solvation = -27115.407650 eV Core-core repulsion = 22847.134105 eV Total energy + Delta-G solvation = -4268.273545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.03210 -41.86551 -40.59677 -39.98454 -37.86095 -36.99540 -35.39655 -34.94186 -31.79753 -31.60030 -31.28959 -30.38376 -28.45987 -25.99787 -24.84551 -24.21021 -23.79308 -22.79762 -20.77882 -20.20095 -19.45947 -18.67276 -18.53080 -18.12936 -17.86442 -17.64452 -17.24149 -16.78253 -16.72877 -16.64059 -16.21020 -15.88895 -15.24095 -14.94438 -14.78107 -14.75480 -14.57948 -14.21531 -14.01828 -13.98712 -13.63252 -13.57085 -13.36894 -13.29519 -13.07074 -12.70007 -12.52867 -12.50301 -12.23790 -12.09421 -12.06208 -11.86322 -11.78261 -11.69681 -11.61853 -10.74225 -10.65524 -9.91145 -9.55572 -9.42611 -8.23820 -6.38179 -0.81814 0.18835 0.62738 1.26631 1.36758 1.39064 1.50795 1.59864 1.80961 2.32080 2.44834 2.66343 3.06137 3.11912 3.36659 3.45123 3.63338 3.78718 3.88077 3.95252 3.98300 4.12795 4.14335 4.29433 4.30655 4.37065 4.57849 4.72340 4.80145 4.86470 4.93427 4.99460 5.02056 5.06173 5.14191 5.18699 5.23336 5.34992 5.36253 5.41605 5.53765 5.78993 5.84132 6.03571 6.49535 6.63080 6.71083 7.19928 7.35707 8.83843 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.002022 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.055436 B =13841.544611 C =14836.679659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.281 1.281 13 C 0.500 3.500 14 O -0.577 6.577 15 C 0.061 3.939 16 O -0.339 6.339 17 C 0.497 3.503 18 O -0.533 6.533 19 C -0.193 4.193 20 C 0.005 3.995 21 C -0.132 4.132 22 C -0.075 4.075 23 C -0.130 4.130 24 C -0.067 4.067 25 C -0.161 4.161 26 C 0.103 3.897 27 F -0.144 7.144 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.000 1.000 35 H 0.268 0.732 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.165 0.835 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.169 0.831 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 -1.476 29.365 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.207 1.207 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.017 4.017 16 O -0.255 6.255 17 C 0.345 3.655 18 O -0.426 6.426 19 C -0.211 4.211 20 C -0.014 4.014 21 C -0.133 4.133 22 C -0.092 4.092 23 C -0.148 4.148 24 C -0.084 4.084 25 C -0.179 4.179 26 C 0.083 3.917 27 F -0.123 7.123 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.182 0.818 39 H 0.150 0.850 40 H 0.170 0.830 41 H 0.179 0.821 42 H 0.186 0.814 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.082 -1.189 29.188 29.374 hybrid contribution 0.531 -0.463 -0.980 1.206 sum -2.552 -1.652 28.208 28.371 Atomic orbital electron populations 1.22174 0.94319 1.03778 1.01840 1.21863 0.95569 0.81005 1.04378 1.48205 1.63552 1.15243 1.05692 1.18807 0.95633 0.91701 0.79722 1.21724 0.97784 1.32140 1.06579 0.92785 1.25863 1.02454 0.94457 0.96416 1.70054 1.37683 1.34102 1.14819 0.85348 0.78936 0.78025 0.78374 1.19199 1.19390 1.20694 1.20522 0.78342 0.86638 0.85793 1.90672 1.47142 1.20089 1.87734 1.22449 1.04587 0.92343 0.82283 1.86240 1.79040 1.45270 1.14929 1.21721 0.74102 0.86031 0.83607 1.90860 1.44244 1.20510 1.86939 1.22144 1.08661 1.01865 0.88441 1.22293 0.89588 0.98699 0.90773 1.18991 1.07121 0.96387 0.90804 1.21713 0.94716 0.91153 1.01645 1.21608 0.99795 1.01638 0.91782 1.21667 0.93959 0.93924 0.98875 1.21443 1.02554 0.95331 0.98587 1.18206 0.99408 0.79950 0.94090 1.91489 1.86747 1.38025 1.96031 0.93599 0.88407 0.92493 0.89925 0.88525 0.95189 0.98149 0.92340 0.86838 0.86351 0.81767 0.84998 0.83026 0.82073 0.81375 0.82447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 10.24 71.98 0.74 -3.37 16 2 C 0.09 2.89 5.93 86.38 0.51 3.40 16 3 N -0.59 -25.59 2.46 -826.16 -2.03 -27.62 16 4 C 0.26 14.19 5.16 85.63 0.44 14.63 16 5 C -0.54 -31.47 9.39 25.60 0.24 -31.23 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 9 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 C 0.50 21.84 7.75 87.66 0.68 22.52 16 14 O -0.58 -31.22 16.08 16.00 0.26 -30.96 16 15 C 0.06 1.98 4.41 71.23 0.31 2.29 16 16 O -0.34 -11.53 9.66 -51.85 -0.50 -12.03 16 17 C 0.50 14.39 7.87 69.87 0.55 14.94 16 18 O -0.53 -16.87 16.00 19.37 0.31 -16.56 16 19 C -0.19 -4.19 9.53 23.58 0.22 -3.97 16 20 C 0.01 0.10 9.26 23.84 0.22 0.32 16 21 C -0.13 -2.18 5.87 -20.11 -0.12 -2.30 16 22 C -0.07 -0.91 9.41 22.58 0.21 -0.69 16 23 C -0.13 -1.02 10.03 22.23 0.22 -0.79 16 24 C -0.07 -0.43 10.04 22.34 0.22 -0.21 16 25 C -0.16 -1.63 10.01 22.28 0.22 -1.41 16 26 C 0.10 1.64 7.30 22.72 0.17 1.81 16 27 F -0.14 -2.77 16.62 44.97 0.75 -2.02 16 28 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 31 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 32 H 0.10 2.37 6.44 -2.39 -0.02 2.36 16 33 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 34 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16 35 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.11 3.24 7.39 -2.39 -0.02 3.22 16 37 H 0.12 3.24 7.17 -2.38 -0.02 3.22 16 38 H 0.16 2.85 6.08 -2.91 -0.02 2.83 16 39 H 0.13 2.85 7.20 -2.91 -0.02 2.83 16 40 H 0.15 1.49 6.17 -2.91 -0.02 1.47 16 41 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 42 H 0.17 0.01 8.06 -2.91 -0.02 -0.02 16 43 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -79.88 380.41 7.45 -72.44 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.04 Total: 8.58 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 5.31 Total: 16.83 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.74 Total: -83.38 kcal Atomic # 8 Polarization: -59.62 SS G_CDS: 0.07 Total: -59.55 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.75 Total: -2.02 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -79.88 7.45 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060981126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.470 kcal (2) G-P(sol) polarization free energy of solvation -79.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds