Wall clock time and date at job start Tue Mar 31 2020 18:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.47040 * 2 1 4 4 C 1.42896 * 113.99880 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.50038 * 330.06033 * 4 3 2 6 6 C 1.53044 * 109.49517 * 209.99784 * 4 3 2 7 7 C 1.53041 * 109.53568 * 178.68370 * 6 4 3 8 8 C 1.53200 * 109.31175 * 61.36447 * 7 6 4 9 9 N 1.46917 * 108.77427 * 305.36271 * 8 7 6 10 10 C 1.34785 * 120.63258 * 233.58267 * 9 8 7 11 11 O 1.21602 * 120.00115 * 183.94486 * 10 9 8 12 12 C 1.47425 * 119.99354 * 3.95079 * 10 9 8 13 13 C 1.39686 * 120.21566 * 305.97907 * 12 10 9 14 14 C 1.37809 * 119.93565 * 180.30531 * 13 12 10 15 15 C 1.38655 * 120.38115 * 359.42414 * 14 13 12 16 16 C 1.37909 * 120.44112 * 0.60192 * 15 14 13 17 17 C 1.39113 * 120.04925 * 359.67933 * 16 15 14 18 18 S 1.76200 * 120.19103 * 179.97438 * 17 16 15 19 19 C 1.76203 * 99.99771 * 7.80117 * 18 17 16 20 20 H 1.07996 * 120.00342 * 355.59551 * 19 18 17 21 21 C 1.38808 * 119.99930 * 175.59916 * 19 18 17 22 22 N 1.31552 * 120.00015 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99968 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46934 * 90.00129 * 23 21 19 25 25 H 1.48499 * 109.46822 * 210.00125 * 23 21 19 26 26 H 1.48497 * 109.46847 * 330.00003 * 23 21 19 27 27 C 1.46921 * 118.74139 * 53.86499 * 9 8 7 28 28 H 1.08995 * 109.47321 * 300.00293 * 1 2 3 29 29 H 1.08993 * 109.46644 * 60.00375 * 1 2 3 30 30 H 1.08997 * 109.46946 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47321 * 239.99707 * 2 1 3 32 32 H 1.09005 * 109.46840 * 119.99293 * 2 1 3 33 33 H 1.08993 * 109.45937 * 58.66311 * 6 4 3 34 34 H 1.08994 * 109.44788 * 298.69346 * 6 4 3 35 35 H 1.08998 * 109.49786 * 301.41603 * 7 6 4 36 36 H 1.09003 * 109.49802 * 181.31462 * 7 6 4 37 37 H 1.09000 * 109.58575 * 185.57598 * 8 7 6 38 38 H 1.09002 * 109.70117 * 65.22373 * 8 7 6 39 39 H 1.07991 * 120.02876 * 0.02791 * 13 12 10 40 40 H 1.08001 * 119.80592 * 179.72241 * 14 13 12 41 41 H 1.08003 * 119.77984 * 180.30767 * 15 14 13 42 42 H 1.08001 * 119.97680 * 179.70638 * 16 15 14 43 43 H 0.97004 * 119.99974 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.59053 * 65.91950 * 27 9 8 45 45 H 1.09004 * 109.59109 * 186.35100 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8637 0.6014 0.5137 6 6 3.8411 2.7461 0.7219 7 6 5.3676 2.8515 0.7518 8 6 5.8995 2.9114 -0.6836 9 7 5.3893 1.7507 -1.4258 10 6 6.2337 0.9278 -2.0789 11 8 5.7945 0.0126 -2.7484 12 6 7.6897 1.1373 -1.9813 13 6 8.2432 2.3817 -2.2914 14 6 9.6057 2.5694 -2.2043 15 6 10.4318 1.5324 -1.7985 16 6 9.9021 0.2972 -1.4890 17 6 8.5299 0.0861 -1.5763 18 16 7.8492 -1.4907 -1.1824 19 6 9.2821 -2.2909 -0.5411 20 1 10.2371 -1.7870 -0.5623 21 6 9.1835 -3.5691 -0.0088 22 7 10.2534 -4.1667 0.4695 23 14 7.5316 -4.4405 0.0284 24 1 7.3535 -5.2174 -1.2246 25 1 7.4837 -5.3610 1.1927 26 1 6.4445 -3.4358 0.1466 27 6 3.9405 1.5076 -1.4479 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.4583 2.7281 1.7422 34 1 3.4281 3.6057 0.1942 35 1 5.7826 1.9796 1.2574 36 1 5.6595 3.7557 1.2860 37 1 6.9892 2.8867 -0.6708 38 1 5.5605 3.8297 -1.1631 39 1 7.6045 3.1947 -2.6035 40 1 10.0319 3.5311 -2.4489 41 1 11.4978 1.6916 -1.7288 42 1 10.5531 -0.5066 -1.1783 43 1 10.1844 -5.0598 0.8419 44 1 3.4428 2.3136 -1.9870 45 1 3.7370 0.5562 -1.9396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062304826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:02 Heat of formation + Delta-G solvation = -56.205080 kcal Electronic energy + Delta-G solvation = -27057.872582 eV Core-core repulsion = 23359.441733 eV Total energy + Delta-G solvation = -3698.430849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33274 -38.69530 -37.59965 -36.45440 -32.85435 -32.75475 -31.61983 -30.96825 -30.52796 -29.28576 -26.04042 -25.69651 -23.50425 -23.04366 -22.54639 -22.10593 -20.86927 -19.40464 -18.03678 -17.25499 -16.58039 -16.29092 -16.18862 -15.61304 -15.34031 -15.15184 -14.81514 -14.51891 -14.40176 -13.84546 -13.62848 -13.46904 -13.23860 -13.10157 -12.85622 -12.66157 -12.59096 -12.24946 -12.20037 -11.97218 -11.62260 -11.39530 -11.26683 -11.22698 -11.15391 -11.07717 -10.94521 -10.63136 -10.59718 -9.84600 -9.79372 -9.62100 -9.49536 -8.91821 -8.76097 -8.49841 -8.39626 -6.90665 -6.54460 -4.28726 1.49475 1.82804 2.75718 2.90857 3.13979 3.16739 3.26403 3.36473 3.60083 4.06844 4.18300 4.50108 4.58733 4.70601 4.84571 4.87464 4.88924 4.91892 5.02129 5.06998 5.13830 5.24075 5.27615 5.36196 5.45364 5.49590 5.58187 5.65219 5.71823 5.74093 5.75960 5.77966 5.86992 5.93644 6.00878 6.02248 6.14371 6.18103 6.41522 6.55515 6.71189 6.87766 6.98835 7.11533 7.36932 7.54478 7.68856 8.26758 8.46037 8.87976 10.52619 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.009359 B = 0.004855 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.906435 B = 5765.741338 C = 7959.538030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.381 6.381 4 C 0.076 3.924 5 H 0.068 0.932 6 C -0.113 4.113 7 C -0.134 4.134 8 C 0.099 3.901 9 N -0.609 5.609 10 C 0.572 3.428 11 O -0.521 6.521 12 C -0.155 4.155 13 C -0.074 4.074 14 C -0.168 4.168 15 C -0.081 4.081 16 C -0.140 4.140 17 C -0.023 4.023 18 S 0.005 5.995 19 C -0.552 4.552 20 H 0.110 0.890 21 C 0.104 3.896 22 N -0.862 5.862 23 Si 0.849 3.151 24 H -0.262 1.262 25 H -0.268 1.268 26 H -0.237 1.237 27 C 0.096 3.904 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.147 0.853 43 H 0.276 0.724 44 H 0.072 0.928 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 15.064 0.506 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.300 6.300 4 C 0.017 3.983 5 H 0.086 0.914 6 C -0.151 4.151 7 C -0.173 4.173 8 C -0.024 4.024 9 N -0.344 5.344 10 C 0.361 3.639 11 O -0.396 6.396 12 C -0.168 4.168 13 C -0.094 4.094 14 C -0.191 4.191 15 C -0.102 4.102 16 C -0.164 4.164 17 C -0.140 4.140 18 S 0.262 5.738 19 C -0.698 4.698 20 H 0.128 0.872 21 C -0.107 4.107 22 N -0.495 5.495 23 Si 0.673 3.327 24 H -0.187 1.187 25 H -0.192 1.192 26 H -0.161 1.161 27 C -0.028 4.028 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.164 0.836 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.095 13.772 0.205 19.004 hybrid contribution 0.961 -0.306 0.270 1.044 sum -12.133 13.466 0.475 18.132 Atomic orbital electron populations 1.21730 0.93759 1.02238 1.02893 1.22565 0.95440 0.83754 1.00625 1.87869 1.20458 1.26608 1.95032 1.22537 0.81022 0.99124 0.95592 0.91391 1.21568 0.95682 0.96886 1.00927 1.21932 0.94842 1.03419 0.97060 1.22001 1.01267 0.87805 0.91345 1.47911 1.06047 1.28241 1.52238 1.18342 0.86249 0.80770 0.78506 1.90779 1.78100 1.31010 1.39725 1.19169 0.91718 0.94625 1.11256 1.20907 0.95373 0.94603 0.98558 1.20762 0.93209 0.99194 1.05937 1.21138 0.99283 0.92878 0.96923 1.21562 0.94266 0.98393 1.02227 1.22250 0.95855 0.97983 0.97936 1.83469 1.17269 1.02940 1.70136 1.22963 0.95740 1.04701 1.46430 0.87236 1.24760 0.97154 0.96019 0.92814 1.69882 1.28576 1.14534 1.36544 0.86890 0.84562 0.81839 0.79442 1.18701 1.19238 1.16122 1.22033 0.80280 1.03481 0.96965 0.92005 0.91892 0.91130 0.92990 0.93219 0.91073 0.91020 0.90813 0.89989 0.88074 0.91429 0.86411 0.86534 0.86456 0.83569 0.91406 0.91009 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.58 6.47 37.16 0.24 0.82 16 3 O -0.38 -4.71 9.99 -35.23 -0.35 -5.07 16 4 C 0.08 0.95 2.77 -26.38 -0.07 0.87 16 5 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 6 C -0.11 -1.16 5.53 -26.69 -0.15 -1.30 16 7 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 8 C 0.10 1.12 5.51 -3.71 -0.02 1.10 16 9 N -0.61 -9.05 2.97 -173.77 -0.52 -9.56 16 10 C 0.57 10.83 6.57 -12.52 -0.08 10.75 16 11 O -0.52 -11.66 15.46 5.28 0.08 -11.57 16 12 C -0.15 -2.91 4.90 -104.75 -0.51 -3.42 16 13 C -0.07 -1.12 7.42 -39.20 -0.29 -1.41 16 14 C -0.17 -2.38 10.02 -39.58 -0.40 -2.78 16 15 C -0.08 -1.31 10.02 -39.55 -0.40 -1.71 16 16 C -0.14 -2.82 9.25 -39.38 -0.36 -3.19 16 17 C -0.02 -0.50 6.14 -38.39 -0.24 -0.73 16 18 S 0.00 0.11 17.88 -107.50 -1.92 -1.81 16 19 C -0.55 -15.18 9.62 30.94 0.30 -14.89 16 20 H 0.11 3.09 5.08 -52.49 -0.27 2.82 16 21 C 0.10 2.88 5.50 -17.46 -0.10 2.78 16 22 N -0.86 -24.65 13.96 55.49 0.77 -23.88 16 23 Si 0.85 20.55 27.74 -169.99 -4.71 15.83 16 24 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.24 -5.67 6.74 56.52 0.38 -5.29 16 27 C 0.10 1.31 6.07 -3.49 -0.02 1.29 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.60 8.05 -51.93 -0.42 0.18 16 32 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.22 4.73 -51.93 -0.25 0.97 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.12 1.43 7.36 -52.49 -0.39 1.04 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 42 H 0.15 3.22 4.98 -52.49 -0.26 2.96 16 43 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.45 6.93 -51.93 -0.36 1.09 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -31.38 371.83 -9.49 -40.87 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.57 Total: 3.85 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.88 Total: -14.27 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.26 Total: -33.44 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.27 Total: -16.64 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.71 Total: 15.83 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -1.92 Total: -1.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.38 -9.49 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062304826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.332 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds