Wall clock time and date at job start Tue Mar 31 2020 18:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.47040 * 2 1 4 4 C 1.42896 * 113.99880 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.50038 * 330.06033 * 4 3 2 6 6 C 1.53044 * 109.49517 * 209.99784 * 4 3 2 7 7 C 1.53041 * 109.53568 * 178.68370 * 6 4 3 8 8 C 1.53200 * 109.31175 * 61.36447 * 7 6 4 9 9 N 1.46917 * 108.77427 * 305.36271 * 8 7 6 10 10 C 1.34785 * 120.63258 * 233.58267 * 9 8 7 11 11 O 1.21602 * 120.00115 * 183.94486 * 10 9 8 12 12 C 1.47425 * 119.99354 * 3.95079 * 10 9 8 13 13 C 1.39686 * 120.21566 * 305.97907 * 12 10 9 14 14 C 1.37809 * 119.93565 * 180.30531 * 13 12 10 15 15 C 1.38655 * 120.38115 * 359.42414 * 14 13 12 16 16 C 1.37909 * 120.44112 * 0.60192 * 15 14 13 17 17 C 1.39113 * 120.04925 * 359.67933 * 16 15 14 18 18 S 1.76200 * 120.19103 * 179.97438 * 17 16 15 19 19 C 1.76203 * 99.99771 * 7.80117 * 18 17 16 20 20 H 1.07996 * 120.00342 * 355.59551 * 19 18 17 21 21 C 1.38808 * 119.99930 * 175.59916 * 19 18 17 22 22 N 1.31552 * 120.00015 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99968 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46934 * 90.00129 * 23 21 19 25 25 H 1.48499 * 109.46822 * 210.00125 * 23 21 19 26 26 H 1.48497 * 109.46847 * 330.00003 * 23 21 19 27 27 C 1.46921 * 118.74139 * 53.86499 * 9 8 7 28 28 H 1.08995 * 109.47321 * 300.00293 * 1 2 3 29 29 H 1.08993 * 109.46644 * 60.00375 * 1 2 3 30 30 H 1.08997 * 109.46946 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47321 * 239.99707 * 2 1 3 32 32 H 1.09005 * 109.46840 * 119.99293 * 2 1 3 33 33 H 1.08993 * 109.45937 * 58.66311 * 6 4 3 34 34 H 1.08994 * 109.44788 * 298.69346 * 6 4 3 35 35 H 1.08998 * 109.49786 * 301.41603 * 7 6 4 36 36 H 1.09003 * 109.49802 * 181.31462 * 7 6 4 37 37 H 1.09000 * 109.58575 * 185.57598 * 8 7 6 38 38 H 1.09002 * 109.70117 * 65.22373 * 8 7 6 39 39 H 1.07991 * 120.02876 * 0.02791 * 13 12 10 40 40 H 1.08001 * 119.80592 * 179.72241 * 14 13 12 41 41 H 1.08003 * 119.77984 * 180.30767 * 15 14 13 42 42 H 1.08001 * 119.97680 * 179.70638 * 16 15 14 43 43 H 0.97004 * 119.99974 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.59053 * 65.91950 * 27 9 8 45 45 H 1.09004 * 109.59109 * 186.35100 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8637 0.6014 0.5137 6 6 3.8411 2.7461 0.7219 7 6 5.3676 2.8515 0.7518 8 6 5.8995 2.9114 -0.6836 9 7 5.3893 1.7507 -1.4258 10 6 6.2337 0.9278 -2.0789 11 8 5.7945 0.0126 -2.7484 12 6 7.6897 1.1373 -1.9813 13 6 8.2432 2.3817 -2.2914 14 6 9.6057 2.5694 -2.2043 15 6 10.4318 1.5324 -1.7985 16 6 9.9021 0.2972 -1.4890 17 6 8.5299 0.0861 -1.5763 18 16 7.8492 -1.4907 -1.1824 19 6 9.2821 -2.2909 -0.5411 20 1 10.2371 -1.7870 -0.5623 21 6 9.1835 -3.5691 -0.0088 22 7 10.2534 -4.1667 0.4695 23 14 7.5316 -4.4405 0.0284 24 1 7.3535 -5.2174 -1.2246 25 1 7.4837 -5.3610 1.1927 26 1 6.4445 -3.4358 0.1466 27 6 3.9405 1.5076 -1.4479 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.4583 2.7281 1.7422 34 1 3.4281 3.6057 0.1942 35 1 5.7826 1.9796 1.2574 36 1 5.6595 3.7557 1.2860 37 1 6.9892 2.8867 -0.6708 38 1 5.5605 3.8297 -1.1631 39 1 7.6045 3.1947 -2.6035 40 1 10.0319 3.5311 -2.4489 41 1 11.4978 1.6916 -1.7288 42 1 10.5531 -0.5066 -1.1783 43 1 10.1844 -5.0598 0.8419 44 1 3.4428 2.3136 -1.9870 45 1 3.7370 0.5562 -1.9396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062304826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:01 Heat of formation + Delta-G solvation = -75.401323 kcal Electronic energy + Delta-G solvation = -27058.704994 eV Core-core repulsion = 23359.441733 eV Total energy + Delta-G solvation = -3699.263261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60131 -39.84763 -38.94335 -37.58800 -34.88429 -33.92131 -32.61678 -32.14941 -31.95534 -30.32263 -28.07747 -26.87328 -24.50560 -24.25474 -23.63725 -23.34753 -22.02271 -20.75835 -19.67907 -18.58659 -17.80673 -17.65717 -17.38096 -17.25704 -16.74527 -16.37779 -16.01375 -15.83124 -15.41594 -15.19591 -15.06700 -14.90986 -14.47146 -14.19444 -13.99456 -13.92769 -13.83135 -13.67822 -13.31749 -13.17908 -13.07272 -13.02310 -12.69847 -12.46756 -12.32352 -12.12973 -12.02076 -11.96545 -11.59393 -11.53549 -11.40707 -11.20530 -10.76472 -10.62648 -10.56769 -9.83442 -9.63530 -8.75862 -8.64322 -6.38338 0.07917 0.42261 0.93332 1.18437 1.31379 1.51511 1.57367 1.91960 2.08623 2.51537 2.65101 2.70521 2.83919 3.47092 3.73954 3.80559 3.95874 3.97269 4.02869 4.10609 4.15449 4.20953 4.25770 4.40149 4.48279 4.52363 4.55567 4.59300 4.67203 4.71806 4.79300 4.83753 4.89736 4.97378 5.00289 5.05502 5.13525 5.21757 5.31674 5.35510 5.42876 5.47665 5.58859 5.62311 6.01151 6.12860 6.13529 6.28381 6.77653 7.07354 8.46317 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.009359 B = 0.004855 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.906435 B = 5765.741338 C = 7959.538030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 O -0.383 6.383 4 C 0.078 3.922 5 H 0.042 0.958 6 C -0.106 4.106 7 C -0.130 4.130 8 C 0.090 3.910 9 N -0.599 5.599 10 C 0.563 3.437 11 O -0.569 6.569 12 C -0.156 4.156 13 C -0.064 4.064 14 C -0.135 4.135 15 C -0.076 4.076 16 C -0.161 4.161 17 C -0.049 4.049 18 S -0.054 6.054 19 C -0.556 4.556 20 H 0.088 0.912 21 C 0.058 3.942 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.263 1.263 25 H -0.248 1.248 26 H -0.241 1.241 27 C 0.096 3.904 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.162 0.838 40 H 0.172 0.828 41 H 0.150 0.850 42 H 0.115 0.885 43 H 0.281 0.719 44 H 0.095 0.905 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.580 19.791 0.260 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 O -0.302 6.302 4 C 0.019 3.981 5 H 0.061 0.939 6 C -0.144 4.144 7 C -0.168 4.168 8 C -0.030 4.030 9 N -0.333 5.333 10 C 0.352 3.648 11 O -0.449 6.449 12 C -0.167 4.167 13 C -0.083 4.083 14 C -0.156 4.156 15 C -0.097 4.097 16 C -0.186 4.186 17 C -0.165 4.165 18 S 0.198 5.802 19 C -0.703 4.703 20 H 0.106 0.894 21 C -0.150 4.150 22 N -0.538 5.538 23 Si 0.722 3.278 24 H -0.188 1.188 25 H -0.172 1.172 26 H -0.165 1.165 27 C -0.027 4.027 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.179 0.821 40 H 0.190 0.810 41 H 0.167 0.833 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.061 18.604 -0.025 23.320 hybrid contribution 1.322 -1.416 0.253 1.953 sum -12.739 17.189 0.228 21.396 Atomic orbital electron populations 1.21721 0.91668 1.03343 1.03273 1.22706 0.97156 0.83255 0.99966 1.87862 1.20176 1.27195 1.94946 1.22520 0.81109 0.99763 0.94687 0.93945 1.21565 0.95706 0.95849 1.01245 1.21934 0.94579 1.03905 0.96383 1.22366 1.01182 0.87560 0.91941 1.47996 1.06113 1.28255 1.50964 1.18522 0.86817 0.80793 0.78665 1.90754 1.78786 1.33102 1.42262 1.19421 0.91628 0.95338 1.10353 1.21420 0.96548 0.93764 0.96599 1.21399 0.92401 1.00349 1.01479 1.21526 1.01397 0.91362 0.95372 1.21460 0.93434 0.99747 1.03944 1.22187 0.96872 0.96677 1.00765 1.83352 1.17003 1.06826 1.73001 1.23051 0.95971 1.05000 1.46295 0.89403 1.25485 1.00092 0.96681 0.92704 1.69949 1.30258 1.15289 1.38295 0.86107 0.80910 0.80844 0.79899 1.18772 1.17203 1.16465 1.22096 0.79856 1.02816 0.97923 0.91364 0.91672 0.89733 0.94235 0.93447 0.90286 0.89046 0.93502 0.86512 0.88439 0.87479 0.82091 0.81047 0.83253 0.86748 0.90929 0.88724 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.28 71.98 0.74 -1.62 16 2 C 0.05 1.02 6.47 71.98 0.47 1.48 16 3 O -0.38 -9.16 9.99 -148.98 -1.49 -10.65 16 4 C 0.08 1.90 2.77 30.82 0.09 1.98 16 5 H 0.04 1.23 7.79 -2.39 -0.02 1.22 16 6 C -0.11 -1.86 5.53 30.62 0.17 -1.69 16 7 C -0.13 -2.24 6.08 30.67 0.19 -2.06 16 8 C 0.09 1.71 5.51 86.37 0.48 2.19 16 9 N -0.60 -16.98 2.97 -821.94 -2.44 -19.41 16 10 C 0.56 21.31 6.57 86.66 0.57 21.88 16 11 O -0.57 -26.59 15.46 -4.04 -0.06 -26.65 16 12 C -0.16 -5.70 4.90 -19.95 -0.10 -5.79 16 13 C -0.06 -1.62 7.42 22.52 0.17 -1.45 16 14 C -0.13 -3.04 10.02 22.27 0.22 -2.82 16 15 C -0.08 -2.23 10.02 22.29 0.22 -2.01 16 16 C -0.16 -6.65 9.25 22.40 0.21 -6.44 16 17 C -0.05 -2.20 6.14 23.04 0.14 -2.06 16 18 S -0.05 -2.90 17.88 -56.49 -1.01 -3.91 16 19 C -0.56 -32.79 9.62 67.96 0.65 -32.14 16 20 H 0.09 5.40 5.08 -2.91 -0.01 5.39 16 21 C 0.06 3.37 5.50 84.87 0.47 3.84 16 22 N -0.90 -54.22 13.96 21.65 0.30 -53.91 16 23 Si 0.90 44.61 27.74 68.60 1.90 46.51 16 24 H -0.26 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.25 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.24 -11.92 6.74 99.48 0.67 -11.24 16 27 C 0.10 2.57 6.07 86.51 0.53 3.10 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 0.96 8.05 -2.39 -0.02 0.95 16 32 H 0.05 1.06 8.09 -2.38 -0.02 1.04 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.93 4.73 -2.39 -0.01 1.92 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.16 2.79 7.36 -2.92 -0.02 2.77 16 40 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 41 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 42 H 0.11 5.44 4.98 -2.91 -0.01 5.42 16 43 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.06 2.05 6.93 -2.38 -0.02 2.04 16 Total: -1.00 -76.53 371.83 3.37 -73.16 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.96 Total: 18.47 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 5.20 Total: -23.61 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -2.14 Total: -73.33 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.55 Total: -37.30 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -1.01 Total: -3.91 kcal Total: -76.53 3.37 -73.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062304826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.239 kcal (2) G-P(sol) polarization free energy of solvation -76.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds