Wall clock time and date at job start Tue Mar 31 2020 19:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35979 * 116.99833 * 2 1 4 4 C 1.38548 * 120.08514 * 359.97438 * 3 2 1 5 5 C 1.38239 * 120.01352 * 180.02562 * 4 3 2 6 6 N 1.48024 * 119.90879 * 180.02562 * 5 4 3 7 7 O 1.21798 * 120.00071 * 359.97438 * 6 5 4 8 8 O 1.21809 * 119.99930 * 180.02562 * 6 5 4 9 9 C 1.38274 * 120.18153 * 359.97438 * 5 4 3 10 10 C 1.38194 * 120.16519 * 359.77113 * 9 5 4 11 11 C 1.38723 * 119.98221 * 0.50641 * 10 9 5 12 12 N 1.40127 * 120.09151 * 179.74547 * 11 10 9 13 13 C 1.34774 * 119.99568 * 335.30120 * 12 11 10 14 14 O 1.21290 * 120.00722 * 354.06140 * 13 12 11 15 15 C 1.50700 * 119.99817 * 174.34289 * 13 12 11 16 16 N 1.46500 * 109.47256 * 179.97438 * 15 13 12 17 17 C 1.36934 * 120.00193 * 269.99646 * 16 15 13 18 18 H 1.08004 * 120.00163 * 204.22753 * 17 16 15 19 19 C 1.38809 * 120.00013 * 24.23596 * 17 16 15 20 20 N 1.31622 * 120.00212 * 5.04229 * 19 17 16 21 21 Si 1.86803 * 120.00387 * 185.04085 * 19 17 16 22 22 H 1.48498 * 109.46822 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47027 * 119.99745 * 21 19 17 24 24 H 1.48495 * 109.46933 * 240.00033 * 21 19 17 25 25 C 1.46502 * 119.99669 * 89.99992 * 16 15 13 26 26 C 1.53004 * 117.49659 * 193.78438 * 25 16 15 27 27 C 1.53003 * 117.49850 * 125.12672 * 25 16 15 28 28 H 1.09007 * 109.47170 * 59.99464 * 1 2 3 29 29 H 1.08994 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47004 * 299.99987 * 1 2 3 31 31 H 1.07999 * 119.99295 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.91935 * 180.02562 * 9 5 4 33 33 H 1.07997 * 120.00983 * 180.27397 * 10 9 5 34 34 H 0.97002 * 120.00000 * 155.30350 * 12 11 10 35 35 H 1.08996 * 109.47107 * 300.00192 * 15 13 12 36 36 H 1.09004 * 109.47653 * 59.99847 * 15 13 12 37 37 H 0.97004 * 120.00728 * 185.00101 * 20 19 17 38 38 H 1.08998 * 115.55048 * 339.45690 * 25 16 15 39 39 H 1.09000 * 117.49571 * 0.02562 * 26 25 16 40 40 H 1.09003 * 117.49550 * 145.02199 * 26 25 16 41 41 H 1.08997 * 117.50295 * 214.97744 * 27 25 16 42 42 H 1.09005 * 117.49613 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 -0.0005 5 6 1.9225 3.6056 -0.0011 6 7 1.1158 4.8467 -0.0011 7 8 -0.1004 4.7826 -0.0011 8 8 1.6685 5.9323 -0.0020 9 6 3.3032 3.6807 -0.0005 10 6 4.0614 2.5253 0.0053 11 6 3.4373 1.2865 0.0000 12 7 4.2039 0.1135 0.0006 13 6 5.4622 0.1308 -0.4820 14 8 5.8940 1.1313 -1.0145 15 6 6.3307 -1.0953 -0.3657 16 7 7.6414 -0.8237 -0.9612 17 6 7.8560 -1.0783 -2.2894 18 1 8.8578 -1.2609 -2.6492 19 6 6.7861 -1.1016 -3.1734 20 7 5.5797 -0.7817 -2.7551 21 14 7.0581 -1.5867 -4.9567 22 1 8.4942 -1.8975 -5.1715 23 1 6.2391 -2.7840 -5.2744 24 1 6.6574 -0.4637 -5.8418 25 6 8.7224 -0.2797 -0.1355 26 6 9.9485 0.2825 -0.8578 27 6 10.0451 -1.0482 -0.1075 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2148 2.3196 -0.0014 32 1 3.7903 4.6446 -0.0005 33 1 5.1397 2.5869 0.0102 34 1 3.8290 -0.7108 0.3482 35 1 6.4554 -1.3537 0.6858 36 1 5.8588 -1.9261 -0.8904 37 1 4.8205 -0.8675 -3.3528 38 1 8.4085 0.2155 0.7834 39 1 9.9505 0.2480 -1.9473 40 1 10.4414 1.1474 -0.4139 41 1 10.6017 -1.0583 0.8296 42 1 10.1108 -1.9588 -0.7031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063516469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:37 Heat of formation + Delta-G solvation = 22.920660 kcal Electronic energy + Delta-G solvation = -29282.097843 eV Core-core repulsion = 25040.804929 eV Total energy + Delta-G solvation = -4241.292914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -42.01100 -40.60995 -38.86838 -37.49531 -36.81058 -36.38448 -34.30921 -33.48871 -30.99441 -30.53112 -30.22802 -27.78472 -27.16278 -25.51663 -23.93606 -22.81971 -22.13864 -21.52192 -20.23949 -19.79713 -19.53945 -18.57501 -17.77308 -17.36813 -16.89332 -16.44114 -16.41102 -16.00465 -15.84857 -15.49276 -14.54633 -14.34957 -14.23624 -13.89448 -13.53569 -13.41828 -12.94776 -12.89153 -12.53361 -11.99408 -11.97367 -11.86295 -11.41715 -11.40704 -11.27811 -11.02519 -11.01247 -10.98629 -10.81509 -10.77413 -10.63115 -10.27588 -10.04210 -9.91960 -9.48495 -8.99870 -8.74273 -8.60236 -7.79417 -6.91589 -6.04497 -3.47381 0.02756 1.12289 1.55450 1.60676 2.97578 3.24765 3.32163 3.34186 3.36098 3.47036 4.01211 4.32659 4.49383 4.66699 4.76176 4.78599 4.92661 4.97589 4.98993 5.13764 5.28305 5.31610 5.44241 5.57933 5.73107 5.84086 5.89846 5.94373 6.01196 6.04219 6.33981 6.36300 6.39721 6.45910 6.55380 6.76506 6.83908 6.86997 6.99597 7.21478 7.58658 7.83278 7.96663 8.15454 8.93945 9.24131 9.57741 10.01662 11.04172 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.003444 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.500017 B = 8127.965224 C = 8672.263080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.078 3.922 4 C -0.127 4.127 5 C -0.058 4.058 6 N 0.042 4.958 7 O -0.183 6.183 8 O -0.173 6.173 9 C -0.053 4.053 10 C -0.116 4.116 11 C 0.227 3.773 12 N -0.671 5.671 13 C 0.532 3.468 14 O -0.493 6.493 15 C 0.176 3.824 16 N -0.540 5.540 17 C -0.249 4.249 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.907 5.907 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.128 3.872 26 C -0.197 4.197 27 C -0.223 4.223 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.175 0.825 34 H 0.409 0.591 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.257 0.743 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 -0.463 9.258 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.029 3.971 4 C -0.148 4.148 5 C -0.144 4.144 6 N 0.556 4.444 7 O -0.395 6.395 8 O -0.387 6.387 9 C -0.074 4.074 10 C -0.138 4.138 11 C 0.125 3.875 12 N -0.314 5.314 13 C 0.320 3.680 14 O -0.364 6.364 15 C 0.045 3.955 16 N -0.255 5.255 17 C -0.378 4.378 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.553 5.553 21 Si 0.748 3.252 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.019 3.981 26 C -0.236 4.236 27 C -0.263 4.263 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.192 0.808 34 H 0.244 0.756 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.071 -0.588 8.687 10.614 hybrid contribution -0.870 -0.050 -1.146 1.440 sum -6.941 -0.638 7.541 10.269 Atomic orbital electron populations 1.23123 0.77909 1.04371 1.01523 1.86097 1.21644 1.24911 1.89246 1.18364 0.90456 0.84547 1.03692 1.20609 1.01421 0.89445 1.03292 1.20561 0.91285 0.83447 1.19077 1.43571 1.01174 1.02786 0.96866 1.94478 0.96286 1.94129 1.54561 1.94512 1.74403 1.15690 1.54064 1.20883 0.90035 1.00915 0.95531 1.21393 1.02759 0.88253 1.01401 1.17769 0.86895 0.89360 0.93514 1.44437 1.15582 1.09453 1.61964 1.22476 0.79524 0.91862 0.74115 1.90487 1.72519 1.35007 1.38382 1.20468 0.85744 0.94042 0.95237 1.43301 1.05411 1.70007 1.06751 1.19250 0.94407 1.41468 0.82710 0.90373 1.24962 0.95912 0.99637 0.98344 1.69338 0.98667 1.51564 1.35705 0.85973 0.77651 0.77498 0.84087 1.20241 1.21593 1.21612 1.20987 0.83762 0.98024 0.95349 1.23108 1.04398 0.95643 1.00402 1.23420 1.05442 0.96125 1.01347 0.92425 0.87742 0.92499 0.82959 0.83082 0.80772 0.75555 0.93693 0.87900 0.93219 0.89189 0.88431 0.90549 0.90576 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.89 9.91 -19.67 -0.19 -4.09 16 3 C 0.08 1.12 6.70 -39.07 -0.26 0.86 16 4 C -0.13 -1.75 8.54 -39.47 -0.34 -2.08 16 5 C -0.06 -0.89 6.85 -79.93 -0.55 -1.43 16 6 N 0.04 0.68 4.45 33.97 0.15 0.83 16 7 O -0.18 -2.97 18.44 -29.46 -0.54 -3.51 16 8 O -0.17 -2.89 18.44 -29.46 -0.54 -3.43 16 9 C -0.05 -0.80 9.55 -39.58 -0.38 -1.18 16 10 C -0.12 -1.90 8.72 -39.42 -0.34 -2.24 16 11 C 0.23 3.68 6.45 -83.49 -0.54 3.14 16 12 N -0.67 -11.12 5.29 -9.75 -0.05 -11.17 16 13 C 0.53 10.76 5.41 -10.99 -0.06 10.70 16 14 O -0.49 -11.81 12.75 5.55 0.07 -11.74 16 15 C 0.18 3.51 5.48 -5.19 -0.03 3.48 16 16 N -0.54 -12.05 2.38 -167.02 -0.40 -12.45 16 17 C -0.25 -6.21 8.65 -15.06 -0.13 -6.34 16 18 H 0.08 1.95 6.60 -52.48 -0.35 1.61 16 19 C 0.01 0.23 5.22 -17.43 -0.09 0.14 16 20 N -0.91 -23.34 7.98 55.49 0.44 -22.90 16 21 Si 0.92 20.94 29.56 -169.99 -5.02 15.92 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 C 0.13 2.49 6.60 -67.93 -0.45 2.05 16 26 C -0.20 -3.66 9.77 -26.69 -0.26 -3.92 16 27 C -0.22 -3.84 10.10 -26.69 -0.27 -4.11 16 28 H 0.06 0.48 7.66 -51.93 -0.40 0.09 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.15 1.78 5.84 -52.49 -0.31 1.48 16 32 H 0.15 2.03 7.60 -52.48 -0.40 1.63 16 33 H 0.18 3.10 5.80 -52.49 -0.30 2.79 16 34 H 0.41 5.73 8.34 -40.82 -0.34 5.39 16 35 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.10 2.20 6.84 -51.93 -0.36 1.84 16 37 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 38 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.10 2.02 6.65 -51.93 -0.35 1.68 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -29.76 358.44 -8.25 -38.01 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.86 Total: 8.87 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.70 Total: 0.28 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.15 Total: -45.69 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.21 Total: -22.78 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.76 -8.25 -38.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.932 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds