Wall clock time and date at job start Tue Mar 31 2020 19:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35979 * 116.99833 * 2 1 4 4 C 1.38548 * 120.08514 * 359.97438 * 3 2 1 5 5 C 1.38239 * 120.01352 * 180.02562 * 4 3 2 6 6 N 1.48024 * 119.90879 * 180.02562 * 5 4 3 7 7 O 1.21798 * 120.00071 * 359.97438 * 6 5 4 8 8 O 1.21809 * 119.99930 * 180.02562 * 6 5 4 9 9 C 1.38274 * 120.18153 * 359.97438 * 5 4 3 10 10 C 1.38194 * 120.16519 * 359.77113 * 9 5 4 11 11 C 1.38723 * 119.98221 * 0.50641 * 10 9 5 12 12 N 1.40127 * 120.09151 * 179.74547 * 11 10 9 13 13 C 1.34774 * 119.99568 * 335.30120 * 12 11 10 14 14 O 1.21290 * 120.00722 * 354.06140 * 13 12 11 15 15 C 1.50700 * 119.99817 * 174.34289 * 13 12 11 16 16 N 1.46500 * 109.47256 * 179.97438 * 15 13 12 17 17 C 1.36934 * 120.00193 * 269.99646 * 16 15 13 18 18 H 1.08004 * 120.00163 * 204.22753 * 17 16 15 19 19 C 1.38809 * 120.00013 * 24.23596 * 17 16 15 20 20 N 1.31622 * 120.00212 * 5.04229 * 19 17 16 21 21 Si 1.86803 * 120.00387 * 185.04085 * 19 17 16 22 22 H 1.48498 * 109.46822 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47027 * 119.99745 * 21 19 17 24 24 H 1.48495 * 109.46933 * 240.00033 * 21 19 17 25 25 C 1.46502 * 119.99669 * 89.99992 * 16 15 13 26 26 C 1.53004 * 117.49659 * 193.78438 * 25 16 15 27 27 C 1.53003 * 117.49850 * 125.12672 * 25 16 15 28 28 H 1.09007 * 109.47170 * 59.99464 * 1 2 3 29 29 H 1.08994 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47004 * 299.99987 * 1 2 3 31 31 H 1.07999 * 119.99295 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.91935 * 180.02562 * 9 5 4 33 33 H 1.07997 * 120.00983 * 180.27397 * 10 9 5 34 34 H 0.97002 * 120.00000 * 155.30350 * 12 11 10 35 35 H 1.08996 * 109.47107 * 300.00192 * 15 13 12 36 36 H 1.09004 * 109.47653 * 59.99847 * 15 13 12 37 37 H 0.97004 * 120.00728 * 185.00101 * 20 19 17 38 38 H 1.08998 * 115.55048 * 339.45690 * 25 16 15 39 39 H 1.09000 * 117.49571 * 0.02562 * 26 25 16 40 40 H 1.09003 * 117.49550 * 145.02199 * 26 25 16 41 41 H 1.08997 * 117.50295 * 214.97744 * 27 25 16 42 42 H 1.09005 * 117.49613 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 -0.0005 5 6 1.9225 3.6056 -0.0011 6 7 1.1158 4.8467 -0.0011 7 8 -0.1004 4.7826 -0.0011 8 8 1.6685 5.9323 -0.0020 9 6 3.3032 3.6807 -0.0005 10 6 4.0614 2.5253 0.0053 11 6 3.4373 1.2865 0.0000 12 7 4.2039 0.1135 0.0006 13 6 5.4622 0.1308 -0.4820 14 8 5.8940 1.1313 -1.0145 15 6 6.3307 -1.0953 -0.3657 16 7 7.6414 -0.8237 -0.9612 17 6 7.8560 -1.0783 -2.2894 18 1 8.8578 -1.2609 -2.6492 19 6 6.7861 -1.1016 -3.1734 20 7 5.5797 -0.7817 -2.7551 21 14 7.0581 -1.5867 -4.9567 22 1 8.4942 -1.8975 -5.1715 23 1 6.2391 -2.7840 -5.2744 24 1 6.6574 -0.4637 -5.8418 25 6 8.7224 -0.2797 -0.1355 26 6 9.9485 0.2825 -0.8578 27 6 10.0451 -1.0482 -0.1075 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2148 2.3196 -0.0014 32 1 3.7903 4.6446 -0.0005 33 1 5.1397 2.5869 0.0102 34 1 3.8290 -0.7108 0.3482 35 1 6.4554 -1.3537 0.6858 36 1 5.8588 -1.9261 -0.8904 37 1 4.8205 -0.8675 -3.3528 38 1 8.4085 0.2155 0.7834 39 1 9.9505 0.2480 -1.9473 40 1 10.4414 1.1474 -0.4139 41 1 10.6017 -1.0583 0.8296 42 1 10.1108 -1.9588 -0.7031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063516469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:35 Heat of formation + Delta-G solvation = 6.438138 kcal Electronic energy + Delta-G solvation = -29282.812579 eV Core-core repulsion = 25040.804929 eV Total energy + Delta-G solvation = -4242.007650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.27284 -41.81943 -40.23432 -38.77277 -38.22004 -37.66276 -35.73506 -35.17235 -32.59303 -31.90726 -31.44609 -28.83406 -28.53706 -26.88673 -25.57914 -24.00628 -23.36380 -22.95513 -21.80045 -21.31039 -20.71498 -19.84664 -19.14427 -18.63599 -18.13537 -17.91277 -17.81359 -17.48435 -16.97918 -16.64014 -16.13774 -15.85972 -15.50932 -15.46066 -14.82905 -14.70455 -14.25793 -14.17399 -14.05941 -13.54230 -13.16341 -13.05633 -12.77877 -12.76122 -12.63075 -12.44510 -12.35259 -12.31454 -12.30518 -12.25190 -12.20233 -11.93516 -11.62959 -11.56359 -10.96526 -10.54558 -10.39777 -9.99254 -9.05177 -8.63715 -7.92717 -5.34794 -1.22856 -0.03837 0.29553 0.36150 1.40800 1.46265 1.52474 1.97038 2.07565 2.14256 2.42523 2.67742 3.19899 3.35996 3.41950 3.49068 3.58480 3.61551 3.89523 4.11056 4.28825 4.36043 4.38860 4.41987 4.45290 4.50194 4.55597 4.65909 4.75934 4.78499 4.93955 4.96009 4.99928 5.11407 5.21883 5.30428 5.34165 5.52956 5.61629 5.65772 6.12091 6.27203 6.54398 6.67530 7.11113 7.67643 7.86556 8.20291 9.11150 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.003444 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.500017 B = 8127.965224 C = 8672.263080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.315 6.315 3 C 0.091 3.909 4 C -0.120 4.120 5 C -0.062 4.062 6 N 0.041 4.959 7 O -0.173 6.173 8 O -0.193 6.193 9 C -0.054 4.054 10 C -0.123 4.123 11 C 0.206 3.794 12 N -0.662 5.662 13 C 0.537 3.463 14 O -0.537 6.537 15 C 0.174 3.826 16 N -0.557 5.557 17 C -0.248 4.248 18 H 0.070 0.930 19 C -0.036 4.036 20 N -0.916 5.916 21 Si 0.964 3.036 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.307 1.307 25 C 0.107 3.893 26 C -0.203 4.203 27 C -0.195 4.195 28 H 0.061 0.939 29 H 0.128 0.872 30 H 0.075 0.925 31 H 0.178 0.822 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.421 0.579 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.245 0.755 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 -1.090 10.584 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.229 6.229 3 C 0.041 3.959 4 C -0.140 4.140 5 C -0.147 4.147 6 N 0.554 4.446 7 O -0.388 6.388 8 O -0.402 6.402 9 C -0.074 4.074 10 C -0.145 4.145 11 C 0.105 3.895 12 N -0.306 5.306 13 C 0.327 3.673 14 O -0.411 6.411 15 C 0.044 3.956 16 N -0.273 5.273 17 C -0.378 4.378 18 H 0.087 0.913 19 C -0.231 4.231 20 N -0.562 5.562 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.213 1.213 24 H -0.235 1.235 25 C -0.002 4.002 26 C -0.242 4.242 27 C -0.236 4.236 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.093 0.907 31 H 0.195 0.805 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.259 0.741 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.938 -1.213 10.054 12.275 hybrid contribution -0.675 0.124 -1.488 1.638 sum -7.613 -1.089 8.566 11.512 Atomic orbital electron populations 1.23505 0.75512 1.06448 1.02578 1.86108 1.24054 1.23903 1.88791 1.18268 0.89757 0.85447 1.02385 1.20825 1.02591 0.88496 1.02122 1.20684 0.91293 0.83537 1.19189 1.43682 1.01218 1.02963 0.96711 1.94460 0.96391 1.94150 1.53842 1.94519 1.74451 1.16073 1.55131 1.20919 0.90183 1.00966 0.95310 1.21214 1.02079 0.88985 1.02181 1.17909 0.87911 0.88959 0.94739 1.44034 1.14675 1.10255 1.61624 1.22370 0.80396 0.91185 0.73382 1.90472 1.73734 1.36363 1.40492 1.20525 0.84876 0.93364 0.96880 1.43446 1.06883 1.70709 1.06261 1.19331 0.93868 1.40395 0.84222 0.91257 1.25483 0.96203 1.00835 1.00621 1.69525 0.98496 1.52587 1.35612 0.85243 0.77637 0.76488 0.81177 1.19681 1.21260 1.23546 1.21277 0.83692 0.99438 0.95754 1.23103 1.04526 0.97602 0.98966 1.23377 1.03545 0.94597 1.02041 0.92004 0.85347 0.90694 0.80529 0.82098 0.82521 0.74146 0.89946 0.89585 0.94438 0.87451 0.91283 0.88262 0.87152 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.32 9.91 -93.31 -0.92 -8.24 16 3 C 0.09 2.45 6.70 22.60 0.15 2.60 16 4 C -0.12 -3.04 8.54 22.34 0.19 -2.85 16 5 C -0.06 -1.80 6.85 36.38 0.25 -1.55 16 6 N 0.04 1.28 4.45 -46.44 -0.21 1.07 16 7 O -0.17 -5.27 18.44 18.89 0.35 -4.92 16 8 O -0.19 -6.30 18.44 18.88 0.35 -5.95 16 9 C -0.05 -1.59 9.55 22.27 0.21 -1.38 16 10 C -0.12 -4.04 8.72 22.38 0.20 -3.84 16 11 C 0.21 6.59 6.45 38.19 0.25 6.84 16 12 N -0.66 -21.71 5.29 -303.13 -1.60 -23.31 16 13 C 0.54 21.85 5.41 87.66 0.47 22.32 16 14 O -0.54 -26.24 12.75 -3.06 -0.04 -26.28 16 15 C 0.17 6.87 5.48 85.63 0.47 7.34 16 16 N -0.56 -24.83 2.38 -682.33 -1.62 -26.45 16 17 C -0.25 -12.51 8.65 84.03 0.73 -11.78 16 18 H 0.07 3.53 6.60 -2.91 -0.02 3.51 16 19 C -0.04 -1.86 5.22 84.86 0.44 -1.42 16 20 N -0.92 -47.93 7.98 21.65 0.17 -47.76 16 21 Si 0.96 43.83 29.56 68.60 2.03 45.85 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 25 C 0.11 4.03 6.60 44.99 0.30 4.32 16 26 C -0.20 -7.38 9.77 30.62 0.30 -7.08 16 27 C -0.20 -6.35 10.10 30.62 0.31 -6.04 16 28 H 0.06 0.85 7.66 -2.38 -0.02 0.83 16 29 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 31 H 0.18 3.56 5.84 -2.91 -0.02 3.54 16 32 H 0.16 4.33 7.60 -2.91 -0.02 4.30 16 33 H 0.16 5.78 5.80 -2.91 -0.02 5.77 16 34 H 0.42 11.45 8.34 -92.71 -0.77 10.67 16 35 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 36 H 0.09 3.69 6.84 -2.38 -0.02 3.68 16 37 H 0.25 13.05 8.32 -92.71 -0.77 12.28 16 38 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 39 H 0.07 2.90 6.65 -2.39 -0.02 2.89 16 40 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -64.55 358.44 4.19 -60.35 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.32 Total: 26.84 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 5.38 Total: 8.79 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -3.26 Total: -96.44 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -0.27 Total: -45.40 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -64.55 4.19 -60.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.790 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds