Wall clock time and date at job start Tue Mar 31 2020 18:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47025 * 2 1 4 4 C 1.36942 * 119.99860 * 266.67910 * 3 2 1 5 5 H 1.07993 * 119.99529 * 338.15367 * 4 3 2 6 6 C 1.38812 * 119.99581 * 158.15629 * 4 3 2 7 7 N 1.31613 * 120.00545 * 5.16335 * 6 4 3 8 8 Si 1.86807 * 119.99319 * 185.16697 * 6 4 3 9 9 H 1.48491 * 109.47205 * 90.00135 * 8 6 4 10 10 H 1.48503 * 109.46880 * 210.00065 * 8 6 4 11 11 H 1.48500 * 109.47358 * 329.99752 * 8 6 4 12 12 C 1.46499 * 120.00026 * 86.67185 * 3 2 1 13 13 C 1.50700 * 109.47568 * 270.00179 * 12 3 2 14 14 O 1.21238 * 119.99641 * 359.97438 * 13 12 3 15 15 N 1.34774 * 119.99757 * 179.97438 * 13 12 3 16 16 C 1.34779 * 119.99430 * 179.97438 * 15 13 12 17 17 O 1.21545 * 120.00428 * 0.02562 * 16 15 13 18 18 N 1.34781 * 119.99741 * 180.02562 * 16 15 13 19 19 C 1.40125 * 119.99806 * 185.18163 * 18 16 15 20 20 C 1.38842 * 119.99888 * 213.52702 * 19 18 16 21 21 C 1.38180 * 120.06402 * 179.75774 * 20 19 18 22 22 C 1.38543 * 120.11913 * 0.44778 * 21 20 19 23 23 C 1.39274 * 119.94683 * 359.54664 * 22 21 20 24 24 C 1.38502 * 119.89406 * 0.23376 * 23 22 21 25 25 O 1.36507 * 108.64926 * 180.25109 * 23 22 21 26 26 C 1.43988 * 105.49599 * 342.69833 * 25 23 22 27 27 O 1.36606 * 131.44412 * 179.85401 * 22 21 20 28 28 H 1.09001 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47594 * 300.00004 * 1 2 3 30 30 H 1.08996 * 109.47118 * 60.00231 * 1 2 3 31 31 H 1.09001 * 109.47157 * 240.00088 * 2 1 3 32 32 H 1.08996 * 109.47118 * 119.99769 * 2 1 3 33 33 H 0.96997 * 120.00317 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46833 * 150.00001 * 12 3 2 35 35 H 1.09002 * 109.46908 * 30.00642 * 12 3 2 36 36 H 0.96994 * 120.00411 * 0.02562 * 15 13 12 37 37 H 0.97000 * 119.99642 * 5.18379 * 18 16 15 38 38 H 1.07996 * 119.96527 * 359.97438 * 20 19 18 39 39 H 1.08007 * 119.93550 * 180.32980 * 21 20 19 40 40 H 1.08002 * 120.01317 * 180.02562 * 24 23 22 41 41 H 1.08999 * 110.57016 * 268.58432 * 26 25 23 42 42 H 1.08999 * 110.56623 * 145.71690 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3114 2.0039 -1.1840 5 1 2.5276 1.4163 -2.0639 6 6 2.3305 3.3901 -1.2529 7 7 2.1677 4.1058 -0.1604 8 14 2.5871 4.2400 -2.8966 9 1 1.2712 4.4737 -3.5437 10 1 3.2702 5.5406 -2.6799 11 1 3.4240 3.3812 -3.7725 12 6 2.1931 2.0964 1.2666 13 6 0.9157 2.8144 1.6185 14 8 -0.0455 2.7368 0.8837 15 7 0.8419 3.5427 2.7501 16 6 -0.3003 4.1853 3.0645 17 8 -1.2640 4.1076 2.3279 18 7 -0.3740 4.9141 4.1959 19 6 -1.5916 5.4925 4.5786 20 6 -1.6028 6.7140 5.2387 21 6 -2.8029 7.2880 5.6122 22 6 -3.9976 6.6424 5.3376 23 6 -3.9896 5.4172 4.6755 24 6 -2.7864 4.8447 4.2974 25 8 -5.2788 4.9959 4.5214 26 6 -6.0518 5.7733 5.4548 27 8 -5.2931 6.9885 5.5985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1807 5.0744 -0.2086 34 1 3.0014 2.8209 1.1662 35 1 2.4389 1.3847 2.0547 36 1 1.6110 3.6051 3.3378 37 1 0.4158 5.0382 4.7452 38 1 -0.6727 7.2175 5.4573 39 1 -2.8094 8.2408 6.1209 40 1 -2.7780 3.8948 3.7835 41 1 -6.1311 5.2559 6.4109 42 1 -7.0413 5.9852 5.0496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:10 Heat of formation + Delta-G solvation = -48.363727 kcal Electronic energy + Delta-G solvation = -29134.094483 eV Core-core repulsion = 24889.710446 eV Total energy + Delta-G solvation = -4244.384037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.20214 -40.56470 -38.55305 -37.08612 -36.31662 -35.28853 -34.22154 -33.30328 -31.86174 -30.54259 -29.35271 -28.90323 -26.97663 -25.88076 -23.91762 -23.32767 -22.98941 -21.57850 -20.33813 -19.61192 -18.71436 -18.31848 -17.91121 -17.25116 -16.74207 -16.58053 -15.77639 -15.42356 -15.07440 -14.95686 -14.51361 -14.34092 -13.95736 -13.86789 -13.69121 -13.65472 -13.19078 -13.03016 -12.87832 -12.80843 -12.56935 -12.14565 -11.78397 -11.53306 -11.25853 -11.20326 -10.95554 -10.77842 -10.44913 -10.15253 -10.09835 -9.92605 -9.83181 -9.77455 -9.03403 -8.81553 -8.69807 -8.26730 -7.77318 -6.90576 -5.89325 -3.27150 1.03758 1.18647 2.57019 2.85066 3.09225 3.36684 3.38514 3.44616 3.47736 3.62317 4.31612 4.38769 4.45941 4.52355 4.59114 4.74656 4.93527 4.99181 5.15913 5.35081 5.45945 5.47223 5.61933 5.97324 6.00875 6.06992 6.10615 6.11636 6.24691 6.35844 6.45127 6.60843 6.65316 6.66393 6.80794 7.01314 7.09084 7.17861 7.40633 7.42949 7.69680 7.99254 8.30094 8.89987 9.11654 9.52465 9.75484 10.19101 11.19710 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.002890 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.597163 B = 9686.620274 C =10116.771281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 N -0.576 5.576 4 C -0.240 4.240 5 H 0.077 0.923 6 C 0.005 3.995 7 N -0.915 5.915 8 Si 0.915 3.085 9 H -0.288 1.288 10 H -0.292 1.292 11 H -0.281 1.281 12 C 0.172 3.828 13 C 0.521 3.479 14 O -0.462 6.462 15 N -0.688 5.688 16 C 0.689 3.311 17 O -0.519 6.519 18 N -0.687 5.687 19 C 0.192 3.808 20 C -0.143 4.143 21 C -0.078 4.078 22 C 0.002 3.998 23 C 0.056 3.944 24 C -0.106 4.106 25 O -0.306 6.306 26 C 0.213 3.787 27 O -0.312 6.312 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.255 0.745 34 H 0.121 0.879 35 H 0.034 0.966 36 H 0.397 0.603 37 H 0.408 0.592 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.082 0.918 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 2.973 17.775 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 N -0.296 5.296 4 C -0.369 4.369 5 H 0.095 0.905 6 C -0.191 4.191 7 N -0.563 5.563 8 Si 0.746 3.254 9 H -0.215 1.215 10 H -0.218 1.218 11 H -0.206 1.206 12 C 0.041 3.959 13 C 0.307 3.693 14 O -0.327 6.327 15 N -0.354 5.354 16 C 0.391 3.609 17 O -0.389 6.389 18 N -0.337 5.337 19 C 0.095 3.905 20 C -0.165 4.165 21 C -0.097 4.097 22 C -0.042 4.042 23 C 0.010 3.990 24 C -0.127 4.127 25 O -0.222 6.222 26 C 0.101 3.899 27 O -0.228 6.228 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.139 0.861 35 H 0.051 0.949 36 H 0.230 0.770 37 H 0.244 0.756 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.168 0.832 41 H 0.099 0.901 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.542 2.892 16.350 17.846 hybrid contribution 0.393 0.981 -0.227 1.081 sum -6.149 3.873 16.123 17.685 Atomic orbital electron populations 1.22337 0.98927 0.98024 1.02897 1.20927 0.92491 0.86314 0.98634 1.43886 1.73613 1.09724 1.02347 1.19316 1.39491 0.89418 0.88689 0.90536 1.24905 1.00325 0.96417 0.97488 1.69521 1.55441 1.05369 1.25960 0.86077 0.77602 0.78624 0.83103 1.21470 1.21796 1.20609 1.20729 0.93889 0.94639 0.86632 1.22836 0.91861 0.77691 0.76920 1.90637 1.38227 1.58505 1.45326 1.44914 1.13599 1.49894 1.26978 1.16529 0.84955 0.78803 0.80654 1.91053 1.35914 1.62912 1.49062 1.42959 1.10575 1.54580 1.25637 1.16981 0.84869 0.91603 0.97033 1.20591 0.98039 0.93805 1.04022 1.19723 0.87561 1.00639 1.01784 1.19722 0.85631 0.95239 1.03646 1.19485 0.85538 0.93935 0.99993 1.20019 0.87171 1.02100 1.03376 1.87402 1.15322 1.60801 1.58706 1.25579 0.93977 0.77436 0.92866 1.87341 1.15440 1.32289 1.87752 0.95419 0.92974 0.92784 0.93262 0.94680 0.93375 0.86138 0.94865 0.77008 0.75622 0.84093 0.84459 0.83248 0.90081 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.35 37.16 0.35 -3.11 16 2 C 0.14 2.96 6.43 -4.04 -0.03 2.93 16 3 N -0.58 -13.91 2.10 -174.60 -0.37 -14.28 16 4 C -0.24 -6.41 9.70 -15.06 -0.15 -6.56 16 5 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 6 C 0.00 0.13 5.39 -17.43 -0.09 0.04 16 7 N -0.92 -24.87 8.15 55.49 0.45 -24.42 16 8 Si 0.92 22.20 29.56 -169.99 -5.02 17.18 16 9 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.17 3.74 5.47 -5.19 -0.03 3.71 16 13 C 0.52 11.91 5.46 -10.99 -0.06 11.85 16 14 O -0.46 -12.97 12.13 -18.21 -0.22 -13.19 16 15 N -0.69 -12.23 5.24 -15.78 -0.08 -12.31 16 16 C 0.69 12.93 8.24 -86.91 -0.72 12.22 16 17 O -0.52 -12.64 12.44 -18.48 -0.23 -12.87 16 18 N -0.69 -9.08 5.35 -14.21 -0.08 -9.16 16 19 C 0.19 2.65 6.28 -83.64 -0.53 2.13 16 20 C -0.14 -1.55 9.96 -39.38 -0.39 -1.94 16 21 C -0.08 -0.86 10.05 -39.49 -0.40 -1.25 16 22 C 0.00 0.03 7.15 -39.08 -0.28 -0.25 16 23 C 0.06 0.84 7.15 -39.10 -0.28 0.56 16 24 C -0.11 -1.70 8.67 -39.28 -0.34 -2.05 16 25 O -0.31 -4.42 11.40 -45.71 -0.52 -4.94 16 26 C 0.21 2.11 8.89 101.05 0.90 3.01 16 27 O -0.31 -3.86 11.41 -46.04 -0.53 -4.39 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.20 6.40 -51.93 -0.33 0.87 16 30 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 32 H 0.03 0.63 7.94 -51.93 -0.41 0.22 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.12 2.75 6.30 -51.93 -0.33 2.43 16 35 H 0.03 0.60 7.92 -51.93 -0.41 0.19 16 36 H 0.40 5.01 8.72 -40.82 -0.36 4.66 16 37 H 0.41 3.53 8.84 -40.82 -0.36 3.17 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.15 2.79 6.42 -52.49 -0.34 2.45 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -37.43 352.59 -8.35 -45.78 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.03 Total: 5.99 kcal Atomic # 6 Polarization: 23.32 SS G_CDS: -2.04 Total: 21.28 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.07 Total: -60.16 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.50 Total: -35.38 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.43 -8.35 -45.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.582 kcal (2) G-P(sol) polarization free energy of solvation -37.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds