Wall clock time and date at job start Tue Mar 31 2020 18:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47025 * 2 1 4 4 C 1.36942 * 119.99860 * 266.67910 * 3 2 1 5 5 H 1.07993 * 119.99529 * 338.15367 * 4 3 2 6 6 C 1.38812 * 119.99581 * 158.15629 * 4 3 2 7 7 N 1.31613 * 120.00545 * 5.16335 * 6 4 3 8 8 Si 1.86807 * 119.99319 * 185.16697 * 6 4 3 9 9 H 1.48491 * 109.47205 * 90.00135 * 8 6 4 10 10 H 1.48503 * 109.46880 * 210.00065 * 8 6 4 11 11 H 1.48500 * 109.47358 * 329.99752 * 8 6 4 12 12 C 1.46499 * 120.00026 * 86.67185 * 3 2 1 13 13 C 1.50700 * 109.47568 * 270.00179 * 12 3 2 14 14 O 1.21238 * 119.99641 * 359.97438 * 13 12 3 15 15 N 1.34774 * 119.99757 * 179.97438 * 13 12 3 16 16 C 1.34779 * 119.99430 * 179.97438 * 15 13 12 17 17 O 1.21545 * 120.00428 * 0.02562 * 16 15 13 18 18 N 1.34781 * 119.99741 * 180.02562 * 16 15 13 19 19 C 1.40125 * 119.99806 * 185.18163 * 18 16 15 20 20 C 1.38842 * 119.99888 * 213.52702 * 19 18 16 21 21 C 1.38180 * 120.06402 * 179.75774 * 20 19 18 22 22 C 1.38543 * 120.11913 * 0.44778 * 21 20 19 23 23 C 1.39274 * 119.94683 * 359.54664 * 22 21 20 24 24 C 1.38502 * 119.89406 * 0.23376 * 23 22 21 25 25 O 1.36507 * 108.64926 * 180.25109 * 23 22 21 26 26 C 1.43988 * 105.49599 * 342.69833 * 25 23 22 27 27 O 1.36606 * 131.44412 * 179.85401 * 22 21 20 28 28 H 1.09001 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47594 * 300.00004 * 1 2 3 30 30 H 1.08996 * 109.47118 * 60.00231 * 1 2 3 31 31 H 1.09001 * 109.47157 * 240.00088 * 2 1 3 32 32 H 1.08996 * 109.47118 * 119.99769 * 2 1 3 33 33 H 0.96997 * 120.00317 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46833 * 150.00001 * 12 3 2 35 35 H 1.09002 * 109.46908 * 30.00642 * 12 3 2 36 36 H 0.96994 * 120.00411 * 0.02562 * 15 13 12 37 37 H 0.97000 * 119.99642 * 5.18379 * 18 16 15 38 38 H 1.07996 * 119.96527 * 359.97438 * 20 19 18 39 39 H 1.08007 * 119.93550 * 180.32980 * 21 20 19 40 40 H 1.08002 * 120.01317 * 180.02562 * 24 23 22 41 41 H 1.08999 * 110.57016 * 268.58432 * 26 25 23 42 42 H 1.08999 * 110.56623 * 145.71690 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3114 2.0039 -1.1840 5 1 2.5276 1.4163 -2.0639 6 6 2.3305 3.3901 -1.2529 7 7 2.1677 4.1058 -0.1604 8 14 2.5871 4.2400 -2.8966 9 1 1.2712 4.4737 -3.5437 10 1 3.2702 5.5406 -2.6799 11 1 3.4240 3.3812 -3.7725 12 6 2.1931 2.0964 1.2666 13 6 0.9157 2.8144 1.6185 14 8 -0.0455 2.7368 0.8837 15 7 0.8419 3.5427 2.7501 16 6 -0.3003 4.1853 3.0645 17 8 -1.2640 4.1076 2.3279 18 7 -0.3740 4.9141 4.1959 19 6 -1.5916 5.4925 4.5786 20 6 -1.6028 6.7140 5.2387 21 6 -2.8029 7.2880 5.6122 22 6 -3.9976 6.6424 5.3376 23 6 -3.9896 5.4172 4.6755 24 6 -2.7864 4.8447 4.2974 25 8 -5.2788 4.9959 4.5214 26 6 -6.0518 5.7733 5.4548 27 8 -5.2931 6.9885 5.5985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1807 5.0744 -0.2086 34 1 3.0014 2.8209 1.1662 35 1 2.4389 1.3847 2.0547 36 1 1.6110 3.6051 3.3378 37 1 0.4158 5.0382 4.7452 38 1 -0.6727 7.2175 5.4573 39 1 -2.8094 8.2408 6.1209 40 1 -2.7780 3.8948 3.7835 41 1 -6.1311 5.2559 6.4109 42 1 -7.0413 5.9852 5.0496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068958235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:09 Heat of formation + Delta-G solvation = -75.758897 kcal Electronic energy + Delta-G solvation = -29135.282427 eV Core-core repulsion = 24889.710446 eV Total energy + Delta-G solvation = -4245.571981 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.16714 -42.02296 -39.96016 -38.51725 -37.30011 -37.03689 -35.66619 -34.83434 -33.77456 -31.56129 -31.03054 -30.09690 -28.74788 -26.77872 -25.68028 -24.60882 -24.07241 -22.93287 -21.98752 -21.23689 -20.07456 -19.50384 -18.89536 -18.66272 -18.16476 -17.66344 -17.22683 -17.12159 -16.57709 -16.31474 -15.85723 -15.67335 -15.50522 -15.36291 -14.99558 -14.89503 -14.56550 -14.40376 -14.08257 -14.01851 -13.90250 -13.75711 -13.50556 -13.05415 -12.92304 -12.62739 -12.58208 -12.29990 -12.23661 -12.02695 -11.82179 -11.66228 -11.49925 -10.92249 -10.79212 -10.68208 -10.16321 -9.76719 -8.80918 -8.78712 -7.91140 -5.27913 0.00346 0.16459 1.40802 1.43757 1.49375 1.52742 1.58303 1.80244 2.44687 2.49873 2.53032 2.82017 3.15354 3.37358 3.46180 3.68470 3.79523 4.01773 4.02000 4.09883 4.28635 4.42443 4.47186 4.51277 4.56855 4.72098 4.82313 4.96390 5.02221 5.03625 5.09971 5.12825 5.22225 5.27394 5.40697 5.51354 5.55861 5.60952 5.68268 5.92510 6.09490 6.34053 6.77258 7.14966 7.49254 7.76748 7.92821 8.23956 9.13758 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.002890 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.597163 B = 9686.620274 C =10116.771281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.139 3.861 3 N -0.593 5.593 4 C -0.248 4.248 5 H 0.075 0.925 6 C -0.043 4.043 7 N -0.922 5.922 8 Si 0.963 3.037 9 H -0.311 1.311 10 H -0.290 1.290 11 H -0.264 1.264 12 C 0.172 3.828 13 C 0.524 3.476 14 O -0.520 6.520 15 N -0.673 5.673 16 C 0.688 3.312 17 O -0.579 6.579 18 N -0.659 5.659 19 C 0.172 3.828 20 C -0.118 4.118 21 C -0.069 4.069 22 C 0.000 4.000 23 C 0.030 3.970 24 C -0.133 4.133 25 O -0.336 6.336 26 C 0.205 3.795 27 O -0.318 6.318 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.014 0.986 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.245 0.755 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.423 0.577 37 H 0.433 0.567 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 3.981 20.238 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.014 3.986 3 N -0.313 5.313 4 C -0.378 4.378 5 H 0.092 0.908 6 C -0.237 4.237 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.240 1.240 10 H -0.216 1.216 11 H -0.189 1.189 12 C 0.041 3.959 13 C 0.311 3.689 14 O -0.390 6.390 15 N -0.341 5.341 16 C 0.390 3.610 17 O -0.454 6.454 18 N -0.311 5.311 19 C 0.076 3.924 20 C -0.139 4.139 21 C -0.088 4.088 22 C -0.045 4.045 23 C -0.015 4.015 24 C -0.155 4.155 25 O -0.253 6.253 26 C 0.094 3.906 27 O -0.235 6.235 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.261 0.739 37 H 0.274 0.726 38 H 0.203 0.797 39 H 0.194 0.806 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.265 3.911 18.921 20.026 hybrid contribution -0.089 0.648 -0.873 1.091 sum -5.354 4.559 18.048 19.370 Atomic orbital electron populations 1.22186 0.99684 0.99215 0.99766 1.21112 0.91698 0.85107 1.00701 1.44139 1.73856 1.10911 1.02392 1.19535 1.38746 0.89662 0.89819 0.90754 1.25492 1.01316 0.97215 0.99680 1.69676 1.56313 1.04483 1.26562 0.85325 0.76363 0.78156 0.80846 1.23961 1.21578 1.18885 1.20820 0.92712 0.95290 0.87090 1.23026 0.91390 0.77383 0.77075 1.90624 1.40159 1.60562 1.47657 1.44408 1.14511 1.48864 1.26291 1.16662 0.84072 0.78910 0.81401 1.91032 1.37903 1.64927 1.51524 1.42499 1.11641 1.52977 1.24027 1.17205 0.83903 0.92976 0.98352 1.21030 0.99877 0.91823 1.01137 1.20255 0.86452 1.01536 1.00572 1.20048 0.86769 0.94522 1.03132 1.19640 0.85481 0.95219 1.01169 1.19913 0.89168 1.01572 1.04826 1.87351 1.15603 1.62069 1.60277 1.26114 0.94143 0.76594 0.93722 1.87314 1.15138 1.33366 1.87661 0.91884 0.95279 0.96689 0.92502 0.91100 0.94530 0.87218 0.90275 0.73925 0.72634 0.79719 0.80632 0.87243 0.87408 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.37 9.35 71.98 0.67 -5.70 16 2 C 0.14 5.58 6.43 86.38 0.56 6.14 16 3 N -0.59 -28.36 2.10 -706.32 -1.48 -29.85 16 4 C -0.25 -13.28 9.70 84.03 0.81 -12.47 16 5 H 0.07 3.91 7.80 -2.91 -0.02 3.88 16 6 C -0.04 -2.35 5.39 84.86 0.46 -1.89 16 7 N -0.92 -50.74 8.15 21.65 0.18 -50.56 16 8 Si 0.96 46.28 29.56 68.60 2.03 48.31 16 9 H -0.31 -16.03 7.11 99.48 0.71 -15.33 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 12 C 0.17 7.27 5.47 85.63 0.47 7.74 16 13 C 0.52 24.19 5.46 87.66 0.48 24.66 16 14 O -0.52 -30.39 12.13 19.86 0.24 -30.15 16 15 N -0.67 -23.76 5.24 -440.51 -2.31 -26.06 16 16 C 0.69 26.26 8.24 179.05 1.48 27.73 16 17 O -0.58 -29.84 12.44 18.90 0.24 -29.60 16 18 N -0.66 -16.73 5.35 -317.14 -1.70 -18.42 16 19 C 0.17 4.61 6.28 38.09 0.24 4.85 16 20 C -0.12 -2.15 9.96 22.40 0.22 -1.93 16 21 C -0.07 -1.29 10.05 22.33 0.22 -1.06 16 22 C 0.00 0.00 7.15 22.59 0.16 0.17 16 23 C 0.03 0.93 7.15 22.58 0.16 1.09 16 24 C -0.13 -4.55 8.67 22.47 0.19 -4.35 16 25 O -0.34 -10.09 11.40 -76.13 -0.87 -10.96 16 26 C 0.20 3.86 8.89 113.37 1.01 4.87 16 27 O -0.32 -7.38 11.41 -77.30 -0.88 -8.26 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.03 1.35 6.40 -2.39 -0.02 1.34 16 30 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 2.18 7.99 -2.39 -0.02 2.16 16 32 H 0.07 2.34 7.94 -2.39 -0.02 2.32 16 33 H 0.24 13.64 8.31 -92.71 -0.77 12.87 16 34 H 0.11 4.92 6.30 -2.38 -0.02 4.91 16 35 H 0.08 2.60 7.92 -2.39 -0.02 2.58 16 36 H 0.42 9.94 8.72 -92.71 -0.81 9.13 16 37 H 0.43 6.28 8.84 -92.71 -0.82 5.46 16 38 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.11 4.56 6.42 -2.91 -0.02 4.55 16 41 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -88.21 352.59 2.05 -86.16 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.53 Total: 19.54 kcal Atomic # 6 Polarization: 42.72 SS G_CDS: 7.14 Total: 49.86 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.31 Total: -124.90 kcal Atomic # 8 Polarization: -77.69 SS G_CDS: -1.27 Total: -78.97 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -88.21 2.05 -86.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.403 kcal (2) G-P(sol) polarization free energy of solvation -88.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds