Wall clock time and date at job start Tue Mar 31 2020 19:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35721 * 116.99699 * 2 1 4 4 C 1.39009 * 119.89009 * 359.72467 * 3 2 1 5 5 C 1.37621 * 120.14108 * 180.28148 * 4 3 2 6 6 C 1.40022 * 119.92616 * 0.02562 * 5 4 3 7 7 C 1.46864 * 120.10884 * 180.02562 * 6 5 4 8 8 O 1.21289 * 120.00131 * 179.97438 * 7 6 5 9 9 C 1.50699 * 119.99677 * 359.97288 * 7 6 5 10 10 C 1.53003 * 109.46822 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46822 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00213 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99905 * 180.02562 * 11 10 9 14 14 C 1.37094 * 120.00384 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00296 * 224.48831 * 14 13 11 16 16 C 1.38958 * 119.99570 * 44.48399 * 14 13 11 17 17 N 1.31411 * 120.00238 * 17.99110 * 16 14 13 18 18 Si 1.86802 * 119.99658 * 197.99050 * 16 14 13 19 19 H 1.48495 * 109.47480 * 59.99947 * 18 16 14 20 20 H 1.48502 * 109.46948 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47094 * 299.99979 * 18 16 14 22 22 C 1.46504 * 119.99778 * 359.97438 * 13 11 10 23 23 C 1.52997 * 117.49591 * 183.27600 * 22 13 11 24 24 C 1.52999 * 117.49752 * 114.61789 * 22 13 11 25 25 C 1.40040 * 119.78531 * 359.97438 * 6 5 4 26 26 C 1.37786 * 119.85883 * 0.02562 * 25 6 5 27 27 F 1.35098 * 119.96577 * 180.02562 * 26 25 6 28 28 H 1.08996 * 109.47463 * 60.00119 * 1 2 3 29 29 H 1.09003 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47826 * 299.99760 * 1 2 3 31 31 H 1.08004 * 119.92795 * 0.27705 * 4 3 2 32 32 H 1.08002 * 120.03525 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47425 * 300.00354 * 9 7 6 34 34 H 1.09003 * 109.47135 * 60.00493 * 9 7 6 35 35 H 1.09000 * 109.47330 * 300.00314 * 10 9 7 36 36 H 1.09003 * 109.46942 * 60.00277 * 10 9 7 37 37 H 0.96998 * 119.99741 * 174.95839 * 17 16 14 38 38 H 1.08997 * 115.55380 * 328.94333 * 22 13 11 39 39 H 1.09006 * 117.50238 * 0.02562 * 23 22 13 40 40 H 1.09001 * 117.49684 * 145.02544 * 23 22 13 41 41 H 1.08995 * 117.49993 * 214.98350 * 24 22 13 42 42 H 1.09004 * 117.49920 * 359.97282 * 24 22 13 43 43 H 1.08007 * 120.06978 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2093 0.0000 4 6 1.2856 2.3736 -0.0058 5 6 1.9050 3.6026 -0.0117 6 6 3.3031 3.6803 -0.0124 7 6 3.9682 4.9896 -0.0180 8 8 5.1793 5.0546 -0.0182 9 6 3.1458 6.2524 -0.0238 10 6 4.0763 7.4670 -0.0297 11 6 3.2539 8.7297 -0.0360 12 8 2.0428 8.6648 -0.0354 13 7 3.8643 9.9314 -0.0424 14 6 3.1162 11.0803 -0.0477 15 1 3.3803 11.8936 -0.7073 16 6 2.0182 11.1981 0.7957 17 7 1.8937 10.3952 1.8285 18 14 0.7190 12.4980 0.4613 19 1 0.1198 12.2662 -0.8775 20 1 -0.3403 12.4176 1.4989 21 1 1.3450 13.8442 0.4970 22 6 5.3272 10.0099 -0.0426 23 6 5.9600 11.4011 0.0276 24 6 6.0025 10.6056 -1.2795 25 6 4.0651 2.5053 -0.0065 26 6 3.4357 1.2796 -0.0006 27 9 4.1687 0.1448 0.0055 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2073 2.3136 -0.0058 32 1 1.3133 4.5061 -0.0166 33 1 2.5170 6.2726 -0.9139 34 1 2.5168 6.2805 0.8661 35 1 4.7054 7.4470 0.8603 36 1 4.7050 7.4387 -0.9197 37 1 1.1673 10.5241 2.4583 38 1 5.8418 9.1966 0.4692 39 1 5.2879 12.2580 0.0743 40 1 6.8910 11.5030 0.5851 41 1 6.9614 10.1844 -1.5813 42 1 5.3584 10.9387 -2.0933 43 1 5.1437 2.5599 -0.0066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081713001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:39 Heat of formation + Delta-G solvation = -88.210101 kcal Electronic energy + Delta-G solvation = -28049.308748 eV Core-core repulsion = 23783.276881 eV Total energy + Delta-G solvation = -4266.031867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.00436 -40.54758 -39.49268 -38.45947 -37.24654 -36.08218 -33.08740 -32.20831 -31.08533 -30.97148 -30.51238 -28.05105 -26.16461 -24.41278 -23.24929 -22.60628 -21.65501 -21.08687 -19.93232 -18.89351 -18.71806 -17.36190 -17.16841 -16.52995 -16.31937 -16.03353 -15.52564 -15.43114 -15.28289 -15.09332 -14.82660 -14.60690 -14.39470 -14.11916 -13.76189 -13.45009 -13.17401 -12.88776 -12.63619 -12.55063 -12.28067 -12.19185 -11.93109 -11.54244 -11.44110 -11.20185 -11.00518 -10.87650 -10.83480 -10.76187 -10.40994 -10.18136 -9.93854 -9.69888 -9.60900 -9.31665 -8.69286 -8.55702 -8.00322 -7.00563 -6.10505 -3.85703 0.39781 0.83623 2.28172 2.68527 3.30029 3.36299 3.39790 3.40225 3.75667 4.03742 4.15429 4.30083 4.33296 4.57537 4.73507 4.78675 4.80938 4.85087 4.88478 5.05912 5.08413 5.16770 5.30543 5.41146 5.54778 5.61180 5.66486 5.72850 5.76215 5.82039 5.89586 6.00708 6.12155 6.21897 6.23059 6.27121 6.47590 6.50803 6.52920 6.79997 6.82830 6.96562 7.60246 7.62798 8.28740 9.08298 9.16713 9.68319 10.31039 10.98757 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.002600 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.318096 B =10768.138410 C =12249.275800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.123 3.877 4 C -0.196 4.196 5 C -0.035 4.035 6 C -0.174 4.174 7 C 0.400 3.600 8 O -0.454 6.454 9 C -0.143 4.143 10 C -0.124 4.124 11 C 0.484 3.516 12 O -0.539 6.539 13 N -0.429 5.429 14 C -0.348 4.348 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.835 5.835 18 Si 0.913 3.087 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.279 1.279 22 C 0.076 3.924 23 C -0.175 4.175 24 C -0.207 4.207 25 C -0.060 4.060 26 C 0.053 3.947 27 F -0.131 7.131 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.264 0.736 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 -16.649 -2.948 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.076 3.924 4 C -0.215 4.215 5 C -0.053 4.053 6 C -0.176 4.176 7 C 0.278 3.722 8 O -0.329 6.329 9 C -0.181 4.181 10 C -0.164 4.164 11 C 0.272 3.728 12 O -0.417 6.417 13 N -0.149 5.149 14 C -0.475 4.475 15 H 0.093 0.907 16 C -0.136 4.136 17 N -0.468 5.468 18 Si 0.740 3.260 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.204 1.204 22 C -0.031 4.031 23 C -0.212 4.212 24 C -0.247 4.247 25 C -0.079 4.079 26 C 0.034 3.966 27 F -0.110 7.110 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.322 -16.988 -2.801 17.221 hybrid contribution -0.739 0.515 0.040 0.901 sum -1.061 -16.473 -2.762 16.737 Atomic orbital electron populations 1.23200 0.77409 1.04548 1.01987 1.86093 1.22198 1.25857 1.87835 1.19340 0.90832 0.85749 0.96524 1.21155 1.00712 0.91151 1.08488 1.21495 0.93468 0.98211 0.92135 1.20408 0.94109 0.94796 1.08267 1.22570 0.89220 0.89636 0.70818 1.90511 1.16418 1.89647 1.36346 1.21718 0.99278 0.91288 1.05769 1.21397 0.98383 0.93295 1.03352 1.19750 0.88134 0.83814 0.81085 1.90502 1.14147 1.86077 1.50994 1.42764 1.00925 1.05174 1.66073 1.18801 1.10327 0.95460 1.22920 0.90666 1.25232 0.98458 0.96259 0.93683 1.69818 1.30516 1.36299 1.10211 0.86274 0.81016 0.80352 0.78335 1.19991 1.21232 1.20436 1.21719 0.85085 0.96630 0.99636 1.23071 1.01564 0.96904 0.99704 1.23313 1.01773 1.06538 0.93037 1.21272 1.01780 0.89258 0.95583 1.16765 0.85915 0.82952 1.11015 1.91513 1.76552 1.48439 1.94483 0.92011 0.87757 0.92000 0.83712 0.83208 0.87799 0.87469 0.90236 0.90240 0.92635 0.87862 0.87544 0.89838 0.89783 0.89173 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.80 101.05 0.99 1.12 16 2 O -0.31 -3.10 10.34 -18.87 -0.20 -3.29 16 3 C 0.12 1.33 6.70 -38.92 -0.26 1.07 16 4 C -0.20 -1.82 9.01 -39.52 -0.36 -2.17 16 5 C -0.03 -0.36 9.46 -39.14 -0.37 -0.73 16 6 C -0.17 -2.16 5.87 -105.06 -0.62 -2.78 16 7 C 0.40 5.82 7.11 -30.82 -0.22 5.60 16 8 O -0.45 -7.63 15.97 5.55 0.09 -7.54 16 9 C -0.14 -2.28 3.59 -27.88 -0.10 -2.38 16 10 C -0.12 -2.35 3.61 -27.88 -0.10 -2.45 16 11 C 0.48 11.87 6.96 -10.98 -0.08 11.79 16 12 O -0.54 -14.95 13.75 5.55 0.08 -14.88 16 13 N -0.43 -10.64 2.83 -107.73 -0.31 -10.94 16 14 C -0.35 -9.40 7.91 -14.93 -0.12 -9.52 16 15 H 0.08 1.98 7.27 -52.49 -0.38 1.59 16 16 C 0.07 2.05 4.39 -17.46 -0.08 1.97 16 17 N -0.84 -24.21 11.74 55.50 0.65 -23.56 16 18 Si 0.91 21.60 29.59 -169.99 -5.03 16.57 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.08 1.53 5.87 -67.93 -0.40 1.13 16 23 C -0.17 -3.20 9.80 -26.70 -0.26 -3.47 16 24 C -0.21 -3.62 10.36 -26.69 -0.28 -3.89 16 25 C -0.06 -0.73 9.56 -39.07 -0.37 -1.10 16 26 C 0.05 0.65 7.30 -39.37 -0.29 0.36 16 27 F -0.13 -1.70 17.10 2.25 0.04 -1.67 16 28 H 0.06 0.28 7.64 -51.93 -0.40 -0.12 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 31 H 0.15 0.94 6.27 -52.48 -0.33 0.61 16 32 H 0.15 1.40 7.03 -52.49 -0.37 1.03 16 33 H 0.10 1.58 8.04 -51.93 -0.42 1.16 16 34 H 0.11 1.75 8.04 -51.93 -0.42 1.33 16 35 H 0.08 1.50 7.52 -51.93 -0.39 1.11 16 36 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 37 H 0.26 7.33 8.32 -40.82 -0.34 6.99 16 38 H 0.10 1.93 6.96 -51.93 -0.36 1.57 16 39 H 0.11 2.15 6.73 -51.93 -0.35 1.80 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.15 1.80 7.64 -52.48 -0.40 1.40 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -33.89 369.72 -7.46 -41.36 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.46 Total: 3.83 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.90 Total: -5.45 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.35 Total: -34.51 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.03 Total: -25.71 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.89 -7.46 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081713001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.853 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds