Wall clock time and date at job start Tue Mar 31 2020 19:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35721 * 116.99699 * 2 1 4 4 C 1.39009 * 119.89009 * 359.72467 * 3 2 1 5 5 C 1.37621 * 120.14108 * 180.28148 * 4 3 2 6 6 C 1.40022 * 119.92616 * 0.02562 * 5 4 3 7 7 C 1.46864 * 120.10884 * 180.02562 * 6 5 4 8 8 O 1.21289 * 120.00131 * 179.97438 * 7 6 5 9 9 C 1.50699 * 119.99677 * 359.97288 * 7 6 5 10 10 C 1.53003 * 109.46822 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46822 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00213 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99905 * 180.02562 * 11 10 9 14 14 C 1.37094 * 120.00384 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00296 * 224.48831 * 14 13 11 16 16 C 1.38958 * 119.99570 * 44.48399 * 14 13 11 17 17 N 1.31411 * 120.00238 * 17.99110 * 16 14 13 18 18 Si 1.86802 * 119.99658 * 197.99050 * 16 14 13 19 19 H 1.48495 * 109.47480 * 59.99947 * 18 16 14 20 20 H 1.48502 * 109.46948 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47094 * 299.99979 * 18 16 14 22 22 C 1.46504 * 119.99778 * 359.97438 * 13 11 10 23 23 C 1.52997 * 117.49591 * 183.27600 * 22 13 11 24 24 C 1.52999 * 117.49752 * 114.61789 * 22 13 11 25 25 C 1.40040 * 119.78531 * 359.97438 * 6 5 4 26 26 C 1.37786 * 119.85883 * 0.02562 * 25 6 5 27 27 F 1.35098 * 119.96577 * 180.02562 * 26 25 6 28 28 H 1.08996 * 109.47463 * 60.00119 * 1 2 3 29 29 H 1.09003 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47826 * 299.99760 * 1 2 3 31 31 H 1.08004 * 119.92795 * 0.27705 * 4 3 2 32 32 H 1.08002 * 120.03525 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47425 * 300.00354 * 9 7 6 34 34 H 1.09003 * 109.47135 * 60.00493 * 9 7 6 35 35 H 1.09000 * 109.47330 * 300.00314 * 10 9 7 36 36 H 1.09003 * 109.46942 * 60.00277 * 10 9 7 37 37 H 0.96998 * 119.99741 * 174.95839 * 17 16 14 38 38 H 1.08997 * 115.55380 * 328.94333 * 22 13 11 39 39 H 1.09006 * 117.50238 * 0.02562 * 23 22 13 40 40 H 1.09001 * 117.49684 * 145.02544 * 23 22 13 41 41 H 1.08995 * 117.49993 * 214.98350 * 24 22 13 42 42 H 1.09004 * 117.49920 * 359.97282 * 24 22 13 43 43 H 1.08007 * 120.06978 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2093 0.0000 4 6 1.2856 2.3736 -0.0058 5 6 1.9050 3.6026 -0.0117 6 6 3.3031 3.6803 -0.0124 7 6 3.9682 4.9896 -0.0180 8 8 5.1793 5.0546 -0.0182 9 6 3.1458 6.2524 -0.0238 10 6 4.0763 7.4670 -0.0297 11 6 3.2539 8.7297 -0.0360 12 8 2.0428 8.6648 -0.0354 13 7 3.8643 9.9314 -0.0424 14 6 3.1162 11.0803 -0.0477 15 1 3.3803 11.8936 -0.7073 16 6 2.0182 11.1981 0.7957 17 7 1.8937 10.3952 1.8285 18 14 0.7190 12.4980 0.4613 19 1 0.1198 12.2662 -0.8775 20 1 -0.3403 12.4176 1.4989 21 1 1.3450 13.8442 0.4970 22 6 5.3272 10.0099 -0.0426 23 6 5.9600 11.4011 0.0276 24 6 6.0025 10.6056 -1.2795 25 6 4.0651 2.5053 -0.0065 26 6 3.4357 1.2796 -0.0006 27 9 4.1687 0.1448 0.0055 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2073 2.3136 -0.0058 32 1 1.3133 4.5061 -0.0166 33 1 2.5170 6.2726 -0.9139 34 1 2.5168 6.2805 0.8661 35 1 4.7054 7.4470 0.8603 36 1 4.7050 7.4387 -0.9197 37 1 1.1673 10.5241 2.4583 38 1 5.8418 9.1966 0.4692 39 1 5.2879 12.2580 0.0743 40 1 6.8910 11.5030 0.5851 41 1 6.9614 10.1844 -1.5813 42 1 5.3584 10.9387 -2.0933 43 1 5.1437 2.5599 -0.0066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081713001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:38 Heat of formation + Delta-G solvation = -107.835451 kcal Electronic energy + Delta-G solvation = -28050.159767 eV Core-core repulsion = 23783.276881 eV Total energy + Delta-G solvation = -4266.882886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.94694 -41.45568 -40.64721 -40.07956 -38.15427 -37.75777 -34.91308 -33.73089 -32.74993 -31.90644 -31.62958 -28.77333 -27.67876 -25.92102 -24.28286 -23.60463 -23.08853 -22.71402 -21.24907 -20.48340 -19.52340 -18.60663 -18.07118 -17.89037 -17.63163 -17.30283 -16.84391 -16.64053 -16.58228 -16.14237 -15.89622 -15.83720 -15.75395 -15.39250 -15.30256 -14.94079 -14.31546 -13.96469 -13.92474 -13.70898 -13.68972 -13.29568 -13.02423 -12.89615 -12.78819 -12.69109 -12.54018 -12.23521 -12.15713 -12.14203 -12.10357 -11.94953 -11.62582 -11.20315 -10.82184 -10.67673 -10.16301 -9.91450 -9.41236 -8.92792 -8.16141 -5.94631 -0.53701 -0.01125 1.24418 1.39691 1.47224 1.51184 2.02326 2.27839 2.44421 2.48795 2.71396 3.09315 3.14255 3.26065 3.39217 3.57331 3.80181 3.85057 4.01892 4.07186 4.16339 4.24004 4.29360 4.31233 4.33388 4.36589 4.38658 4.53861 4.70405 4.73516 4.76526 4.89929 4.90505 4.99548 5.00252 5.06343 5.10698 5.13960 5.30501 5.40227 5.47423 5.53005 6.11469 6.24439 6.45927 7.08079 7.22413 7.74737 8.39592 8.92543 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.002600 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.318096 B =10768.138410 C =12249.275800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.324 6.324 3 C 0.129 3.871 4 C -0.187 4.187 5 C -0.028 4.028 6 C -0.190 4.190 7 C 0.412 3.588 8 O -0.481 6.481 9 C -0.137 4.137 10 C -0.110 4.110 11 C 0.470 3.530 12 O -0.581 6.581 13 N -0.446 5.446 14 C -0.358 4.358 15 H 0.075 0.925 16 C 0.024 3.976 17 N -0.871 5.871 18 Si 0.971 3.029 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.261 1.261 22 C 0.044 3.956 23 C -0.171 4.171 24 C -0.180 4.180 25 C -0.061 4.061 26 C 0.032 3.968 27 F -0.141 7.141 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.162 0.838 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.260 0.740 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -17.222 -3.587 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.237 6.237 3 C 0.081 3.919 4 C -0.205 4.205 5 C -0.046 4.046 6 C -0.191 4.191 7 C 0.293 3.707 8 O -0.359 6.359 9 C -0.174 4.174 10 C -0.151 4.151 11 C 0.260 3.740 12 O -0.463 6.463 13 N -0.167 5.167 14 C -0.485 4.485 15 H 0.092 0.908 16 C -0.182 4.182 17 N -0.506 5.506 18 Si 0.796 3.204 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.061 4.061 23 C -0.208 4.208 24 C -0.219 4.219 25 C -0.080 4.080 26 C 0.013 3.987 27 F -0.120 7.120 28 H 0.095 0.905 29 H 0.141 0.859 30 H 0.093 0.907 31 H 0.196 0.804 32 H 0.180 0.820 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.619 -17.548 -3.452 17.895 hybrid contribution -0.650 0.630 0.191 0.925 sum -1.269 -16.917 -3.261 17.276 Atomic orbital electron populations 1.23574 0.74974 1.06391 1.03323 1.86090 1.24725 1.25541 1.87352 1.19466 0.90475 0.86691 0.95220 1.21451 1.02214 0.89870 1.06968 1.21673 0.92642 0.99315 0.90944 1.20172 0.94945 0.93448 1.10569 1.22440 0.88593 0.89945 0.69769 1.90502 1.17353 1.89947 1.38097 1.21646 0.98902 0.90863 1.06024 1.21260 0.98185 0.91775 1.03838 1.20621 0.88241 0.85239 0.79922 1.90455 1.16067 1.86975 1.52762 1.43022 1.02943 1.04831 1.65875 1.19038 1.10926 0.96134 1.22443 0.90777 1.26029 1.00260 0.98383 0.93568 1.69928 1.31112 1.38299 1.11222 0.85370 0.78596 0.78896 0.77560 1.20573 1.21154 1.18578 1.21988 0.82824 0.98541 1.02760 1.23118 1.02043 0.94847 1.00827 1.23318 1.02412 1.04557 0.91627 1.21227 1.01746 0.89397 0.95583 1.16928 0.86759 0.82592 1.12446 1.91480 1.76935 1.48844 1.94716 0.90544 0.85896 0.90668 0.80409 0.82030 0.86997 0.87924 0.90234 0.88971 0.93090 0.86309 0.89885 0.86706 0.86101 0.90514 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.80 113.37 1.11 1.20 16 2 O -0.32 -5.88 10.34 -90.43 -0.94 -6.82 16 3 C 0.13 2.58 6.70 22.70 0.15 2.73 16 4 C -0.19 -2.97 9.01 22.31 0.20 -2.77 16 5 C -0.03 -0.53 9.46 22.56 0.21 -0.31 16 6 C -0.19 -4.57 5.87 -20.15 -0.12 -4.69 16 7 C 0.41 11.86 7.11 27.95 0.20 12.06 16 8 O -0.48 -16.11 15.97 -3.06 -0.05 -16.16 16 9 C -0.14 -4.33 3.59 29.85 0.11 -4.22 16 10 C -0.11 -4.18 3.61 29.85 0.11 -4.07 16 11 C 0.47 23.35 6.96 87.66 0.61 23.96 16 12 O -0.58 -32.96 13.75 -3.05 -0.04 -33.00 16 13 N -0.45 -22.33 2.83 -613.13 -1.74 -24.06 16 14 C -0.36 -19.58 7.91 84.04 0.66 -18.92 16 15 H 0.07 3.95 7.27 -2.91 -0.02 3.93 16 16 C 0.02 1.34 4.39 84.93 0.37 1.71 16 17 N -0.87 -51.64 11.74 21.67 0.25 -51.38 16 18 Si 0.97 44.85 29.59 68.60 2.03 46.88 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 C 0.04 1.74 5.87 44.99 0.26 2.01 16 23 C -0.17 -5.99 9.80 30.62 0.30 -5.69 16 24 C -0.18 -5.89 10.36 30.62 0.32 -5.57 16 25 C -0.06 -1.46 9.56 22.60 0.22 -1.25 16 26 C 0.03 0.77 7.30 22.41 0.16 0.93 16 27 F -0.14 -3.66 17.10 44.97 0.77 -2.89 16 28 H 0.08 0.42 7.64 -2.39 -0.02 0.40 16 29 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 31 H 0.18 1.59 6.27 -2.91 -0.02 1.58 16 32 H 0.16 2.70 7.03 -2.91 -0.02 2.68 16 33 H 0.11 3.34 8.04 -2.39 -0.02 3.32 16 34 H 0.10 3.36 8.04 -2.39 -0.02 3.34 16 35 H 0.08 3.00 7.52 -2.39 -0.02 2.98 16 36 H 0.09 3.23 8.06 -2.39 -0.02 3.21 16 37 H 0.26 14.84 8.32 -92.71 -0.77 14.07 16 38 H 0.12 4.27 6.96 -2.39 -0.02 4.26 16 39 H 0.08 3.32 6.73 -2.38 -0.02 3.30 16 40 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 43 H 0.15 3.60 7.64 -2.91 -0.02 3.58 16 Total: -1.00 -75.09 369.72 6.22 -68.87 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 1.05 Total: 21.45 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 4.88 Total: -2.88 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -1.48 Total: -75.45 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -1.03 Total: -55.98 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.77 Total: -2.89 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -75.09 6.22 -68.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081713001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.961 kcal (2) G-P(sol) polarization free energy of solvation -75.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds