Wall clock time and date at job start Tue Mar 31 2020 18:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 111.00047 * 2 1 4 4 C 1.50706 * 109.46846 * 293.95096 * 3 2 1 5 5 H 1.08001 * 120.00067 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00193 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99890 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00138 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.47020 * 89.99374 * 8 6 4 10 10 H 1.48497 * 109.47141 * 209.99703 * 8 6 4 11 11 H 1.48500 * 109.47265 * 329.99699 * 8 6 4 12 12 C 1.46902 * 111.00146 * 123.94834 * 2 1 3 13 13 C 1.53001 * 109.46901 * 66.04314 * 12 2 1 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 2 15 15 N 1.46499 * 109.46840 * 180.02562 * 14 13 12 16 16 C 1.39464 * 126.25443 * 90.00390 * 15 14 13 17 17 C 1.38616 * 133.36226 * 359.97438 * 16 15 14 18 18 C 1.38132 * 119.82339 * 179.97438 * 17 16 15 19 19 N 1.48022 * 119.90395 * 180.02562 * 18 17 16 20 20 O 1.21798 * 119.99843 * 0.02562 * 19 18 17 21 21 O 1.21801 * 119.99836 * 180.02562 * 19 18 17 22 22 C 1.38402 * 120.18750 * 0.02562 * 18 17 16 23 23 C 1.38118 * 120.31313 * 359.97435 * 22 18 17 24 24 C 1.38622 * 119.91641 * 0.04181 * 23 22 18 25 25 O 1.35555 * 132.99412 * 179.97438 * 24 23 22 26 26 C 1.34230 * 109.17616 * 179.70746 * 25 24 23 27 27 O 1.21597 * 125.27903 * 180.28929 * 26 25 24 28 28 H 1.09005 * 109.47310 * 296.05535 * 1 2 3 29 29 H 1.09001 * 109.46903 * 56.04604 * 1 2 3 30 30 H 1.08990 * 109.47111 * 176.04979 * 1 2 3 31 31 H 1.08997 * 109.47578 * 53.94757 * 3 2 1 32 32 H 1.09000 * 109.47307 * 173.95441 * 3 2 1 33 33 H 0.97001 * 119.99987 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46712 * 306.04716 * 12 2 1 35 35 H 1.09002 * 109.47411 * 186.04828 * 12 2 1 36 36 H 1.09001 * 109.46652 * 60.00371 * 13 12 2 37 37 H 1.08992 * 109.47514 * 300.00460 * 13 12 2 38 38 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 39 39 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 40 40 H 1.08000 * 120.08915 * 0.03107 * 17 16 15 41 41 H 1.08004 * 119.84725 * 179.97438 * 22 18 17 42 42 H 1.08001 * 120.04411 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0486 6 6 2.0277 3.3491 -1.5291 7 7 2.7128 4.0016 -0.6156 8 14 1.5827 4.1868 -3.1383 9 1 0.2707 4.8677 -2.9957 10 1 2.6252 5.1874 -3.4803 11 1 1.4983 3.1710 -4.2183 12 6 1.9955 -0.7659 1.1377 13 6 1.6314 -2.2425 0.9706 14 6 2.1792 -3.0401 2.1558 15 7 1.8311 -4.4540 1.9954 16 6 2.5951 -5.4229 1.3453 17 6 3.8180 -5.3912 0.6935 18 6 4.3288 -6.5466 0.1347 19 7 5.6348 -6.5149 -0.5613 20 8 6.2576 -5.4711 -0.6402 21 8 6.0866 -7.5325 -1.0550 22 6 3.6229 -7.7337 0.2237 23 6 2.4038 -7.7729 0.8716 24 6 1.8829 -6.6185 1.4352 25 8 0.7400 -6.3562 2.1153 26 6 0.7166 -5.0575 2.4538 27 8 -0.1734 -4.5097 3.0754 28 1 -0.3634 0.4514 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0251 -0.0708 31 1 1.5611 1.9275 0.8308 32 1 3.0797 1.3445 0.1082 33 1 2.9873 4.9177 -0.7777 34 1 1.5611 -0.3870 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 2.0658 -2.6213 0.0454 37 1 0.5472 -2.3474 0.9325 38 1 3.2635 -2.9352 2.1943 39 1 1.7444 -2.6612 3.0807 40 1 4.3705 -4.4658 0.6235 41 1 4.0273 -8.6338 -0.2155 42 1 1.8568 -8.7018 0.9389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:41 Heat of formation + Delta-G solvation = -6.797464 kcal Electronic energy + Delta-G solvation = -28093.108778 eV Core-core repulsion = 23850.527189 eV Total energy + Delta-G solvation = -4242.581589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.08983 -42.48440 -39.38330 -38.34259 -37.37884 -36.91742 -36.41685 -33.16533 -32.17729 -32.03965 -30.51452 -27.56095 -26.98709 -26.77165 -24.83343 -23.78677 -23.55211 -22.52997 -21.36347 -20.42449 -20.19904 -19.11223 -18.78037 -18.10367 -17.83439 -17.79421 -16.61739 -16.40729 -15.85461 -15.55913 -15.30497 -15.02003 -14.96219 -14.36579 -14.21339 -14.15208 -13.81392 -13.57951 -13.30927 -12.59925 -12.56100 -12.16966 -11.99213 -11.90539 -11.62958 -11.57296 -11.47265 -11.45330 -11.40925 -11.17571 -10.93639 -10.70747 -10.63929 -10.41381 -10.01242 -9.88695 -9.28014 -9.00893 -8.48484 -7.36453 -6.07311 -4.08879 -0.76003 0.05321 0.76638 0.84683 1.35965 1.87187 2.06497 2.43345 3.28683 3.29256 3.35709 3.39965 3.74779 3.84252 3.98733 4.13772 4.35895 4.48535 4.58648 4.62207 4.82532 4.99504 5.02307 5.06846 5.16534 5.24706 5.27932 5.32211 5.47961 5.65602 5.81988 5.93698 6.03732 6.11165 6.24744 6.30707 6.41262 6.68109 7.02782 7.19701 7.24828 7.26089 7.73578 7.99800 8.10769 8.46983 8.98373 9.55656 11.03650 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.002641 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.859359 B =10599.303585 C =12399.882979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.541 5.541 3 C 0.193 3.807 4 C -0.509 4.509 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.059 3.941 13 C -0.136 4.136 14 C 0.125 3.875 15 N -0.536 5.536 16 C 0.079 3.921 17 C -0.035 4.035 18 C -0.026 4.026 19 N 0.029 4.971 20 O -0.146 6.146 21 O -0.151 6.151 22 C -0.048 4.048 23 C -0.076 4.076 24 C 0.087 3.913 25 O -0.229 6.229 26 C 0.637 3.363 27 O -0.465 6.465 28 H 0.012 0.988 29 H 0.075 0.925 30 H 0.044 0.956 31 H -0.008 1.008 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -26.124 6.112 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.265 5.265 3 C 0.068 3.932 4 C -0.548 4.548 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.070 4.070 13 C -0.174 4.174 14 C 0.006 3.994 15 N -0.267 5.267 16 C -0.021 4.021 17 C -0.057 4.057 18 C -0.110 4.110 19 N 0.551 4.449 20 O -0.364 6.364 21 O -0.368 6.368 22 C -0.068 4.068 23 C -0.095 4.095 24 C 0.038 3.962 25 O -0.135 6.135 26 C 0.392 3.608 27 O -0.345 6.345 28 H 0.031 0.969 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.009 0.991 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.187 0.813 41 H 0.189 0.811 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.338 -25.899 6.533 26.712 hybrid contribution -0.205 1.188 -0.197 1.222 sum 0.133 -24.711 6.336 25.511 Atomic orbital electron populations 1.22259 0.88888 0.99462 1.00739 1.62104 1.07030 1.18074 1.39281 1.19748 0.95392 0.81290 0.96774 1.21147 1.34948 0.96986 1.01696 0.91870 1.24989 0.95217 0.97334 0.97051 1.69951 1.38260 1.11470 1.34123 0.86491 0.78015 0.79245 0.83647 1.20739 1.21179 1.19739 1.21906 1.00395 0.91331 0.93402 1.22052 1.02148 0.96106 0.97121 1.21985 1.02330 0.73349 1.01701 1.46118 1.18662 1.10670 1.51212 1.18080 0.94719 0.88772 1.00497 1.19713 0.92657 0.99278 0.94003 1.20626 0.87888 0.96520 1.05998 1.43383 1.01824 1.00623 0.99113 1.94622 1.58684 1.20037 1.63016 1.94557 1.71086 1.23883 1.47258 1.20780 0.92449 0.97421 0.96152 1.19958 0.95029 0.96514 0.98017 1.19318 0.85299 0.94979 0.96609 1.85106 1.36998 1.28199 1.63150 1.18499 0.83025 0.78732 0.80560 1.91228 1.37476 1.63732 1.42097 0.96947 0.90610 0.93725 0.99064 0.95122 0.92861 0.95488 0.90916 0.90462 0.91044 0.88149 0.87796 0.81335 0.81089 0.81602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.14 60.06 0.55 1.22 16 2 N -0.54 -11.20 4.75 -244.37 -1.16 -12.36 16 3 C 0.19 4.91 4.72 -4.97 -0.02 4.89 16 4 C -0.51 -14.14 8.46 -34.44 -0.29 -14.43 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.06 0.94 4.96 -3.82 -0.02 0.92 16 13 C -0.14 -1.69 5.46 -26.73 -0.15 -1.84 16 14 C 0.13 1.19 6.04 -4.04 -0.02 1.16 16 15 N -0.54 -5.23 2.81 -119.01 -0.33 -5.56 16 16 C 0.08 0.65 6.84 -83.79 -0.57 0.08 16 17 C -0.03 -0.26 9.54 -39.48 -0.38 -0.64 16 18 C -0.03 -0.20 6.85 -79.92 -0.55 -0.75 16 19 N 0.03 0.29 4.45 33.97 0.15 0.45 16 20 O -0.15 -1.72 18.44 -29.46 -0.54 -2.27 16 21 O -0.15 -1.59 18.44 -29.46 -0.54 -2.13 16 22 C -0.05 -0.23 9.54 -39.56 -0.38 -0.61 16 23 C -0.08 -0.33 10.06 -39.48 -0.40 -0.73 16 24 C 0.09 0.64 7.35 -38.99 -0.29 0.36 16 25 O -0.23 -2.23 10.72 -21.98 -0.24 -2.46 16 26 C 0.64 7.39 9.07 54.06 0.49 7.88 16 27 O -0.46 -6.84 17.80 -19.00 -0.34 -7.18 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 1.57 6.76 -51.93 -0.35 1.22 16 30 H 0.04 0.74 6.47 -51.93 -0.34 0.40 16 31 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 32 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 35 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.98 6.55 -51.93 -0.34 0.64 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.97 8.06 -51.93 -0.42 0.56 16 40 H 0.17 1.21 7.61 -52.49 -0.40 0.81 16 41 H 0.17 0.47 7.60 -52.48 -0.40 0.07 16 42 H 0.17 0.22 8.06 -52.49 -0.42 -0.20 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -32.95 368.12 -8.97 -41.93 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -5.11 Total: -5.69 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.12 Total: -1.03 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.61 Total: -43.17 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.66 Total: -14.04 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.95 -8.97 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.129 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds