Wall clock time and date at job start Tue Mar 31 2020 18:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 111.00047 * 2 1 4 4 C 1.50706 * 109.46846 * 293.95096 * 3 2 1 5 5 H 1.08001 * 120.00067 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00193 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99890 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00138 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.47020 * 89.99374 * 8 6 4 10 10 H 1.48497 * 109.47141 * 209.99703 * 8 6 4 11 11 H 1.48500 * 109.47265 * 329.99699 * 8 6 4 12 12 C 1.46902 * 111.00146 * 123.94834 * 2 1 3 13 13 C 1.53001 * 109.46901 * 66.04314 * 12 2 1 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 2 15 15 N 1.46499 * 109.46840 * 180.02562 * 14 13 12 16 16 C 1.39464 * 126.25443 * 90.00390 * 15 14 13 17 17 C 1.38616 * 133.36226 * 359.97438 * 16 15 14 18 18 C 1.38132 * 119.82339 * 179.97438 * 17 16 15 19 19 N 1.48022 * 119.90395 * 180.02562 * 18 17 16 20 20 O 1.21798 * 119.99843 * 0.02562 * 19 18 17 21 21 O 1.21801 * 119.99836 * 180.02562 * 19 18 17 22 22 C 1.38402 * 120.18750 * 0.02562 * 18 17 16 23 23 C 1.38118 * 120.31313 * 359.97435 * 22 18 17 24 24 C 1.38622 * 119.91641 * 0.04181 * 23 22 18 25 25 O 1.35555 * 132.99412 * 179.97438 * 24 23 22 26 26 C 1.34230 * 109.17616 * 179.70746 * 25 24 23 27 27 O 1.21597 * 125.27903 * 180.28929 * 26 25 24 28 28 H 1.09005 * 109.47310 * 296.05535 * 1 2 3 29 29 H 1.09001 * 109.46903 * 56.04604 * 1 2 3 30 30 H 1.08990 * 109.47111 * 176.04979 * 1 2 3 31 31 H 1.08997 * 109.47578 * 53.94757 * 3 2 1 32 32 H 1.09000 * 109.47307 * 173.95441 * 3 2 1 33 33 H 0.97001 * 119.99987 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46712 * 306.04716 * 12 2 1 35 35 H 1.09002 * 109.47411 * 186.04828 * 12 2 1 36 36 H 1.09001 * 109.46652 * 60.00371 * 13 12 2 37 37 H 1.08992 * 109.47514 * 300.00460 * 13 12 2 38 38 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 39 39 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 40 40 H 1.08000 * 120.08915 * 0.03107 * 17 16 15 41 41 H 1.08004 * 119.84725 * 179.97438 * 22 18 17 42 42 H 1.08001 * 120.04411 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0486 6 6 2.0277 3.3491 -1.5291 7 7 2.7128 4.0016 -0.6156 8 14 1.5827 4.1868 -3.1383 9 1 0.2707 4.8677 -2.9957 10 1 2.6252 5.1874 -3.4803 11 1 1.4983 3.1710 -4.2183 12 6 1.9955 -0.7659 1.1377 13 6 1.6314 -2.2425 0.9706 14 6 2.1792 -3.0401 2.1558 15 7 1.8311 -4.4540 1.9954 16 6 2.5951 -5.4229 1.3453 17 6 3.8180 -5.3912 0.6935 18 6 4.3288 -6.5466 0.1347 19 7 5.6348 -6.5149 -0.5613 20 8 6.2576 -5.4711 -0.6402 21 8 6.0866 -7.5325 -1.0550 22 6 3.6229 -7.7337 0.2237 23 6 2.4038 -7.7729 0.8716 24 6 1.8829 -6.6185 1.4352 25 8 0.7400 -6.3562 2.1153 26 6 0.7166 -5.0575 2.4538 27 8 -0.1734 -4.5097 3.0754 28 1 -0.3634 0.4514 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0251 -0.0708 31 1 1.5611 1.9275 0.8308 32 1 3.0797 1.3445 0.1082 33 1 2.9873 4.9177 -0.7777 34 1 1.5611 -0.3870 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 2.0658 -2.6213 0.0454 37 1 0.5472 -2.3474 0.9325 38 1 3.2635 -2.9352 2.1943 39 1 1.7444 -2.6612 3.0807 40 1 4.3705 -4.4658 0.6235 41 1 4.0273 -8.6338 -0.2155 42 1 1.8568 -8.7018 0.9389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:40 Heat of formation + Delta-G solvation = -26.743260 kcal Electronic energy + Delta-G solvation = -28093.973692 eV Core-core repulsion = 23850.527189 eV Total energy + Delta-G solvation = -4243.446503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.80343 -43.22402 -40.08810 -39.23604 -38.61165 -37.71134 -37.46791 -34.94744 -33.43258 -32.72445 -31.27551 -29.33716 -28.15151 -27.67633 -26.38194 -24.41317 -24.25100 -23.87006 -22.40455 -21.72833 -21.14207 -19.84628 -19.41370 -18.87637 -18.60542 -18.55361 -18.48963 -17.43100 -16.89227 -16.69079 -16.41304 -16.15927 -15.87583 -15.53447 -15.14170 -15.07684 -14.89769 -14.64776 -14.59930 -13.94726 -13.54167 -13.38010 -13.27850 -13.07728 -12.84623 -12.71474 -12.62715 -12.60803 -12.40025 -12.36025 -12.28341 -12.28123 -12.14146 -11.94783 -11.60511 -11.28894 -10.63803 -10.54125 -9.72282 -9.09008 -8.22750 -6.32653 -1.43939 -0.45953 0.05879 0.17852 0.59935 1.03061 1.39998 1.40830 1.41274 1.52898 1.90287 2.38751 2.71758 3.09392 3.10838 3.19018 3.32872 3.36979 3.65381 3.83256 3.91231 3.97417 4.10356 4.25464 4.29900 4.37601 4.47710 4.53138 4.59559 4.65492 4.68822 4.80377 4.85056 4.97070 4.99767 5.10849 5.17695 5.20232 5.28803 5.62552 5.68323 6.02211 6.19240 6.25707 6.41948 6.59048 6.82998 7.37157 8.88338 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.002641 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.859359 B =10599.303585 C =12399.882979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.550 5.550 3 C 0.207 3.793 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.968 3.032 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.058 3.942 13 C -0.119 4.119 14 C 0.130 3.870 15 N -0.533 5.533 16 C 0.065 3.935 17 C -0.035 4.035 18 C -0.035 4.035 19 N 0.031 4.969 20 O -0.198 6.198 21 O -0.138 6.138 22 C -0.028 4.028 23 C -0.052 4.052 24 C 0.081 3.919 25 O -0.230 6.230 26 C 0.636 3.364 27 O -0.506 6.506 28 H 0.010 0.990 29 H 0.056 0.944 30 H 0.074 0.926 31 H -0.037 1.037 32 H 0.009 0.991 33 H 0.265 0.735 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.167 0.833 41 H 0.202 0.798 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 -28.886 5.264 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.274 5.274 3 C 0.081 3.919 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.189 1.189 12 C -0.071 4.071 13 C -0.158 4.158 14 C 0.011 3.989 15 N -0.264 5.264 16 C -0.034 4.034 17 C -0.056 4.056 18 C -0.119 4.119 19 N 0.548 4.452 20 O -0.405 6.405 21 O -0.362 6.362 22 C -0.048 4.048 23 C -0.071 4.071 24 C 0.032 3.968 25 O -0.135 6.135 26 C 0.391 3.609 27 O -0.390 6.390 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.092 0.908 31 H -0.019 1.019 32 H 0.027 0.973 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.124 0.876 40 H 0.185 0.815 41 H 0.219 0.781 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.106 -28.618 5.680 29.177 hybrid contribution -0.104 1.834 0.068 1.839 sum 0.002 -26.784 5.748 27.394 Atomic orbital electron populations 1.22224 0.87918 1.00959 0.99759 1.62008 1.07989 1.15517 1.41915 1.19399 0.93927 0.83626 0.94968 1.21476 1.34926 0.97586 1.02465 0.92017 1.25894 0.94975 0.98051 1.00658 1.70071 1.39251 1.11908 1.36167 0.85402 0.77951 0.78148 0.79252 1.19897 1.20639 1.18945 1.21986 1.00524 0.92803 0.91771 1.21825 1.01498 0.93958 0.98508 1.21911 1.03673 0.73147 1.00198 1.45968 1.18490 1.10750 1.51148 1.18100 0.95106 0.88767 1.01462 1.19677 0.92452 0.99583 0.93927 1.20759 0.86920 0.97691 1.06555 1.43691 1.02483 1.00169 0.98830 1.94636 1.60146 1.20531 1.65169 1.94523 1.71431 1.23648 1.46560 1.21202 0.91766 0.97203 0.94606 1.20421 0.94306 0.96801 0.95543 1.19766 0.84492 0.95745 0.96747 1.85071 1.37943 1.27110 1.63355 1.18514 0.82861 0.79186 0.80315 1.91191 1.38921 1.64867 1.44016 0.97164 0.92482 0.90751 1.01949 0.97258 0.92627 0.95285 0.90492 0.90612 0.92085 0.85660 0.87596 0.81526 0.78131 0.77571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 9.14 127.69 1.17 2.70 16 2 N -0.55 -23.14 4.75 -927.03 -4.41 -27.54 16 3 C 0.21 10.91 4.72 85.56 0.40 11.31 16 4 C -0.53 -29.80 8.46 25.60 0.22 -29.58 16 5 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 6 C 0.00 0.13 5.46 84.66 0.46 0.60 16 7 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 8 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 C 0.06 1.85 4.96 86.30 0.43 2.28 16 13 C -0.12 -2.90 5.46 30.59 0.17 -2.73 16 14 C 0.13 2.34 6.04 86.38 0.52 2.86 16 15 N -0.53 -9.83 2.81 -761.04 -2.14 -11.97 16 16 C 0.06 0.95 6.84 38.31 0.26 1.21 16 17 C -0.03 -0.48 9.54 22.33 0.21 -0.27 16 18 C -0.04 -0.45 6.85 36.39 0.25 -0.20 16 19 N 0.03 0.59 4.45 -46.42 -0.21 0.38 16 20 O -0.20 -4.75 18.44 18.89 0.35 -4.40 16 21 O -0.14 -2.62 18.44 18.88 0.35 -2.27 16 22 C -0.03 -0.16 9.54 22.28 0.21 0.06 16 23 C -0.05 -0.22 10.06 22.33 0.22 0.01 16 24 C 0.08 0.97 7.35 22.66 0.17 1.14 16 25 O -0.23 -4.07 10.72 8.56 0.09 -3.98 16 26 C 0.64 14.30 9.07 129.79 1.18 15.48 16 27 O -0.51 -14.98 17.80 19.20 0.34 -14.63 16 28 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.06 2.39 6.76 -2.39 -0.02 2.37 16 30 H 0.07 2.40 6.47 -2.39 -0.02 2.39 16 31 H -0.04 -2.13 8.12 -2.39 -0.02 -2.15 16 32 H 0.01 0.52 7.93 -2.39 -0.02 0.50 16 33 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16 35 H 0.08 2.37 7.93 -2.39 -0.02 2.36 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.62 6.55 -2.39 -0.02 1.61 16 38 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.11 1.92 8.06 -2.39 -0.02 1.90 16 40 H 0.17 2.32 7.61 -2.91 -0.02 2.30 16 41 H 0.20 0.02 7.60 -2.91 -0.02 0.00 16 42 H 0.21 -0.71 8.06 -2.91 -0.02 -0.74 16 Total: -1.00 -73.98 368.12 3.62 -70.35 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: 1.06 Total: -1.38 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.87 Total: 4.85 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -6.46 Total: -94.83 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: 1.13 Total: -25.28 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -73.98 3.62 -70.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.608 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds