Wall clock time and date at job start Tue Mar 31 2020 18:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47118 * 2 1 4 4 C 1.46499 * 120.00145 * 274.51531 * 3 2 1 5 5 C 1.50707 * 109.46890 * 262.19327 * 4 3 2 6 6 H 1.08004 * 119.99922 * 359.97438 * 5 4 3 7 7 C 1.37866 * 119.99980 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00444 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99863 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47168 * 60.00346 * 9 7 5 11 11 H 1.48510 * 109.47118 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47358 * 299.99638 * 9 7 5 13 13 C 1.34782 * 119.99673 * 94.51126 * 3 2 1 14 14 O 1.21359 * 119.99804 * 2.35691 * 13 3 2 15 15 C 1.49346 * 119.99857 * 182.35361 * 13 3 2 16 16 O 1.21383 * 120.00434 * 2.55022 * 15 13 3 17 17 N 1.34779 * 120.00433 * 182.55491 * 15 13 3 18 18 C 1.39721 * 120.00531 * 176.18971 * 17 15 13 19 19 C 1.38953 * 120.07557 * 35.83319 * 18 17 15 20 20 C 1.38071 * 119.92150 * 179.70171 * 19 18 17 21 21 C 1.38319 * 120.07628 * 0.52896 * 20 19 18 22 22 C 1.50702 * 119.91988 * 179.76515 * 21 20 19 23 23 C 1.38266 * 120.15305 * 359.49328 * 21 20 19 24 24 N 1.48018 * 119.96460 * 180.25157 * 23 21 20 25 25 O 1.21801 * 120.00246 * 180.41333 * 24 23 21 26 26 O 1.21806 * 119.99739 * 0.41503 * 24 23 21 27 27 C 1.38122 * 120.07748 * 0.22964 * 23 21 20 28 28 H 1.09003 * 109.46884 * 59.99589 * 1 2 3 29 29 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46634 * 300.00027 * 1 2 3 31 31 H 1.09001 * 109.46533 * 240.00520 * 2 1 3 32 32 H 1.08994 * 109.46949 * 120.00169 * 2 1 3 33 33 H 1.08996 * 109.47562 * 22.18990 * 4 3 2 34 34 H 1.09002 * 109.47119 * 142.19933 * 4 3 2 35 35 H 0.96995 * 120.00115 * 179.97438 * 8 7 5 36 36 H 0.97004 * 119.99008 * 356.18764 * 17 15 13 37 37 H 1.07997 * 120.03462 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.96089 * 180.27691 * 20 19 18 39 39 H 1.08999 * 109.47352 * 259.57050 * 22 21 20 40 40 H 1.08997 * 109.46565 * 139.57309 * 22 21 20 41 41 H 1.08994 * 109.47154 * 19.57240 * 22 21 20 42 42 H 1.07997 * 120.04170 * 180.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1684 2.1051 -1.2648 5 6 3.6058 2.0406 -1.7130 6 1 4.3347 1.5135 -1.1153 7 6 3.9905 2.6554 -2.8855 8 7 3.1033 3.2986 -3.6127 9 14 5.7721 2.5748 -3.4415 10 1 6.1668 1.1563 -3.6340 11 1 5.9242 3.3087 -4.7236 12 1 6.6413 3.1949 -2.4095 13 6 2.3296 1.9859 1.1637 14 8 2.2461 1.3726 2.2075 15 6 2.7772 3.4107 1.1684 16 8 2.8165 4.0381 0.1301 17 7 3.1377 4.0000 2.3257 18 6 3.6319 5.3069 2.3200 19 6 3.1219 6.2403 1.4259 20 6 3.6083 7.5326 1.4271 21 6 4.6096 7.8954 2.3096 22 6 5.1416 9.3054 2.3044 23 6 5.1197 6.9691 3.2003 24 7 6.1874 7.3634 4.1467 25 8 6.6425 6.5459 4.9265 26 8 6.6108 8.5055 4.1456 27 6 4.6339 5.6762 3.2085 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.5309 1.6493 -2.0222 34 1 1.8782 3.1463 -1.1241 35 1 3.3740 3.7314 -4.4374 36 1 3.0540 3.5168 3.1626 37 1 2.3424 5.9567 0.7344 38 1 3.2092 8.2597 0.7355 39 1 6.0846 9.3360 1.7586 40 1 5.3047 9.6360 3.3301 41 1 4.4203 9.9641 1.8207 42 1 5.0324 4.9532 3.9047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123885931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:57 Heat of formation + Delta-G solvation = -24.271278 kcal Electronic energy + Delta-G solvation = -29054.153067 eV Core-core repulsion = 24810.813757 eV Total energy + Delta-G solvation = -4243.339310 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30153 -40.90442 -39.52216 -38.03616 -36.72567 -36.00777 -34.85428 -32.78738 -32.02840 -31.83272 -30.62537 -27.83035 -27.18818 -26.12421 -24.68944 -23.20609 -23.01530 -22.51748 -21.38932 -19.69191 -18.97967 -18.66295 -17.62656 -17.45828 -16.74519 -16.54145 -16.11230 -15.80242 -15.61660 -15.43906 -14.76295 -14.43347 -14.22379 -14.09242 -13.93003 -13.52446 -13.12259 -12.88934 -12.70973 -12.49542 -12.42362 -12.13188 -12.01482 -11.78554 -11.72557 -11.43482 -11.17126 -11.07675 -10.96364 -10.81944 -10.71352 -10.57684 -10.41859 -10.09936 -9.80989 -9.65981 -8.95688 -8.47138 -8.40164 -7.97555 -6.15447 -4.19401 -0.18627 0.72114 1.31500 1.33462 1.88071 2.55637 3.15424 3.23710 3.28293 3.31442 3.66197 3.84381 4.22775 4.33600 4.37547 4.66219 4.70499 4.73571 4.98666 5.20694 5.23490 5.25904 5.41373 5.42649 5.54490 5.57390 5.68935 5.81152 5.86262 5.92054 6.01767 6.05737 6.16927 6.33909 6.43917 6.55485 6.56172 7.06334 7.26511 7.30806 7.63184 7.72911 7.94260 8.03389 8.10799 8.45073 8.82560 9.44821 10.92902 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011120 B = 0.003743 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.476248 B = 7478.850660 C = 8835.636466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.554 5.554 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.053 0.947 7 C 0.072 3.928 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.278 1.278 13 C 0.509 3.491 14 O -0.559 6.559 15 C 0.498 3.502 16 O -0.436 6.436 17 N -0.660 5.660 18 C 0.158 3.842 19 C -0.061 4.061 20 C -0.102 4.102 21 C -0.035 4.035 22 C -0.130 4.130 23 C -0.032 4.032 24 N 0.037 4.963 25 O -0.170 6.170 26 O -0.162 6.162 27 C -0.084 4.084 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.264 0.736 36 H 0.422 0.578 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 6.263 10.338 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.284 5.284 4 C 0.099 3.901 5 C -0.565 4.565 6 H 0.071 0.929 7 C -0.131 4.131 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.204 1.204 13 C 0.291 3.709 14 O -0.440 6.440 15 C 0.281 3.719 16 O -0.303 6.303 17 N -0.309 5.309 18 C 0.062 3.938 19 C -0.081 4.081 20 C -0.121 4.121 21 C -0.037 4.037 22 C -0.186 4.186 23 C -0.116 4.116 24 N 0.553 4.447 25 O -0.384 6.384 26 O -0.376 6.376 27 C -0.106 4.106 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.260 0.740 37 H 0.178 0.822 38 H 0.169 0.831 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.509 6.212 9.374 11.780 hybrid contribution 1.388 -0.331 0.082 1.430 sum -2.120 5.881 9.456 11.336 Atomic orbital electron populations 1.22111 0.96059 1.01762 1.02253 1.21481 0.93970 0.82728 1.03322 1.48333 1.58468 1.13533 1.08097 1.20171 0.97726 0.94243 0.77921 1.21205 0.93686 1.34544 1.07074 0.92861 1.24791 0.97342 0.94733 0.96247 1.69896 1.33693 1.34321 1.14666 0.86664 0.85153 0.78240 0.77994 1.20196 1.21056 1.20362 1.19508 0.80005 0.86704 0.84716 1.90671 1.55692 1.65897 1.31756 1.20595 0.79100 0.89116 0.83118 1.90901 1.45583 1.64339 1.29508 1.43246 1.64042 1.12271 1.11390 1.17374 0.94034 0.85167 0.97238 1.21871 0.98436 0.91223 0.96608 1.21067 0.96111 0.96649 0.98245 1.19874 0.94852 0.96464 0.92530 1.21273 1.01642 0.90250 1.05417 1.20516 0.96835 0.96168 0.98119 1.43533 1.00621 1.00275 1.00286 1.94541 1.60847 1.47584 1.35399 1.94450 1.62113 1.04845 1.76169 1.20639 0.94349 0.94689 1.00887 0.92131 0.91855 0.92792 0.89809 0.90289 0.94805 0.90454 0.92666 0.74021 0.82184 0.83119 0.89727 0.88353 0.90901 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.79 6.16 -4.04 -0.02 1.76 16 3 N -0.55 -11.03 2.48 -175.60 -0.44 -11.46 16 4 C 0.22 5.08 4.80 -5.19 -0.02 5.06 16 5 C -0.53 -13.74 8.37 -34.44 -0.29 -14.03 16 6 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 7 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 8 N -0.89 -24.59 13.29 55.43 0.74 -23.86 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.51 9.79 7.66 -11.63 -0.09 9.70 16 14 O -0.56 -10.75 15.98 5.49 0.09 -10.66 16 15 C 0.50 9.07 7.58 -11.63 -0.09 8.98 16 16 O -0.44 -9.13 9.93 5.47 0.05 -9.08 16 17 N -0.66 -9.48 5.32 -10.30 -0.05 -9.54 16 18 C 0.16 2.16 6.28 -83.75 -0.53 1.63 16 19 C -0.06 -0.81 8.68 -39.38 -0.34 -1.16 16 20 C -0.10 -1.14 9.66 -39.61 -0.38 -1.52 16 21 C -0.03 -0.40 5.88 -104.58 -0.62 -1.02 16 22 C -0.13 -1.22 8.66 36.01 0.31 -0.90 16 23 C -0.03 -0.42 6.84 -79.98 -0.55 -0.97 16 24 N 0.04 0.52 4.45 33.95 0.15 0.68 16 25 O -0.17 -2.56 18.45 -29.46 -0.54 -3.10 16 26 O -0.16 -2.25 15.32 -29.46 -0.45 -2.70 16 27 C -0.08 -1.07 9.48 -39.37 -0.37 -1.44 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 32 H 0.08 1.28 7.26 -51.93 -0.38 0.90 16 33 H 0.03 0.82 8.01 -51.93 -0.42 0.40 16 34 H 0.08 1.93 5.33 -51.96 -0.28 1.65 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.42 5.15 8.30 -40.82 -0.34 4.81 16 37 H 0.16 2.30 6.31 -52.49 -0.33 1.96 16 38 H 0.15 1.28 8.03 -52.49 -0.42 0.86 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.96 5.87 -51.93 -0.30 0.65 16 41 H 0.07 0.52 7.99 -51.93 -0.42 0.10 16 42 H 0.16 1.78 7.61 -52.49 -0.40 1.38 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -30.24 363.33 -7.64 -37.89 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.94 Total: 4.28 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -2.71 Total: 6.03 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.40 Total: -44.18 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.85 Total: -25.54 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.24 -7.64 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123885931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.616 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds