Wall clock time and date at job start Tue Mar 31 2020 18:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47118 * 2 1 4 4 C 1.46499 * 120.00145 * 274.51531 * 3 2 1 5 5 C 1.50707 * 109.46890 * 262.19327 * 4 3 2 6 6 H 1.08004 * 119.99922 * 359.97438 * 5 4 3 7 7 C 1.37866 * 119.99980 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00444 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99863 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47168 * 60.00346 * 9 7 5 11 11 H 1.48510 * 109.47118 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47358 * 299.99638 * 9 7 5 13 13 C 1.34782 * 119.99673 * 94.51126 * 3 2 1 14 14 O 1.21359 * 119.99804 * 2.35691 * 13 3 2 15 15 C 1.49346 * 119.99857 * 182.35361 * 13 3 2 16 16 O 1.21383 * 120.00434 * 2.55022 * 15 13 3 17 17 N 1.34779 * 120.00433 * 182.55491 * 15 13 3 18 18 C 1.39721 * 120.00531 * 176.18971 * 17 15 13 19 19 C 1.38953 * 120.07557 * 35.83319 * 18 17 15 20 20 C 1.38071 * 119.92150 * 179.70171 * 19 18 17 21 21 C 1.38319 * 120.07628 * 0.52896 * 20 19 18 22 22 C 1.50702 * 119.91988 * 179.76515 * 21 20 19 23 23 C 1.38266 * 120.15305 * 359.49328 * 21 20 19 24 24 N 1.48018 * 119.96460 * 180.25157 * 23 21 20 25 25 O 1.21801 * 120.00246 * 180.41333 * 24 23 21 26 26 O 1.21806 * 119.99739 * 0.41503 * 24 23 21 27 27 C 1.38122 * 120.07748 * 0.22964 * 23 21 20 28 28 H 1.09003 * 109.46884 * 59.99589 * 1 2 3 29 29 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46634 * 300.00027 * 1 2 3 31 31 H 1.09001 * 109.46533 * 240.00520 * 2 1 3 32 32 H 1.08994 * 109.46949 * 120.00169 * 2 1 3 33 33 H 1.08996 * 109.47562 * 22.18990 * 4 3 2 34 34 H 1.09002 * 109.47119 * 142.19933 * 4 3 2 35 35 H 0.96995 * 120.00115 * 179.97438 * 8 7 5 36 36 H 0.97004 * 119.99008 * 356.18764 * 17 15 13 37 37 H 1.07997 * 120.03462 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.96089 * 180.27691 * 20 19 18 39 39 H 1.08999 * 109.47352 * 259.57050 * 22 21 20 40 40 H 1.08997 * 109.46565 * 139.57309 * 22 21 20 41 41 H 1.08994 * 109.47154 * 19.57240 * 22 21 20 42 42 H 1.07997 * 120.04170 * 180.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1684 2.1051 -1.2648 5 6 3.6058 2.0406 -1.7130 6 1 4.3347 1.5135 -1.1153 7 6 3.9905 2.6554 -2.8855 8 7 3.1033 3.2986 -3.6127 9 14 5.7721 2.5748 -3.4415 10 1 6.1668 1.1563 -3.6340 11 1 5.9242 3.3087 -4.7236 12 1 6.6413 3.1949 -2.4095 13 6 2.3296 1.9859 1.1637 14 8 2.2461 1.3726 2.2075 15 6 2.7772 3.4107 1.1684 16 8 2.8165 4.0381 0.1301 17 7 3.1377 4.0000 2.3257 18 6 3.6319 5.3069 2.3200 19 6 3.1219 6.2403 1.4259 20 6 3.6083 7.5326 1.4271 21 6 4.6096 7.8954 2.3096 22 6 5.1416 9.3054 2.3044 23 6 5.1197 6.9691 3.2003 24 7 6.1874 7.3634 4.1467 25 8 6.6425 6.5459 4.9265 26 8 6.6108 8.5055 4.1456 27 6 4.6339 5.6762 3.2085 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.5309 1.6493 -2.0222 34 1 1.8782 3.1463 -1.1241 35 1 3.3740 3.7314 -4.4374 36 1 3.0540 3.5168 3.1626 37 1 2.3424 5.9567 0.7344 38 1 3.2092 8.2597 0.7355 39 1 6.0846 9.3360 1.7586 40 1 5.3047 9.6360 3.3301 41 1 4.4203 9.9641 1.8207 42 1 5.0324 4.9532 3.9047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123885931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:56 Heat of formation + Delta-G solvation = -41.180316 kcal Electronic energy + Delta-G solvation = -29054.886298 eV Core-core repulsion = 24810.813757 eV Total energy + Delta-G solvation = -4244.072541 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.38637 -42.24127 -40.76805 -39.39717 -37.84324 -37.48670 -36.15497 -34.72231 -33.04045 -32.86520 -32.05488 -29.14612 -28.75039 -27.27190 -25.91139 -25.02310 -24.10571 -23.67054 -22.57426 -21.04736 -20.12115 -19.79007 -19.04583 -18.71079 -18.50976 -17.92671 -17.38639 -17.05837 -16.91388 -16.73242 -16.39337 -15.95282 -15.51543 -15.19303 -14.95405 -14.79957 -14.51554 -14.31516 -13.80289 -13.73803 -13.61292 -13.58472 -13.22603 -13.18408 -12.94623 -12.77092 -12.73012 -12.53009 -12.35816 -12.28954 -12.08090 -11.84943 -11.82458 -11.69281 -11.52589 -10.76409 -10.62365 -10.21003 -9.67517 -9.49724 -8.18207 -6.27507 -1.25293 -0.32725 0.23261 0.27253 0.47610 1.24603 1.36111 1.37601 1.44102 2.02658 2.29679 2.35506 2.51058 3.15095 3.24712 3.31405 3.46316 3.64769 3.75555 3.89714 4.13799 4.28413 4.33383 4.36838 4.50376 4.69062 4.69682 4.74892 4.77946 4.92089 4.96530 5.01191 5.02405 5.06540 5.22405 5.26871 5.41026 5.50611 5.58699 5.73548 5.91985 6.08135 6.27330 6.51784 6.65536 6.77247 6.98485 7.39402 8.89125 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011120 B = 0.003743 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.476248 B = 7478.850660 C = 8835.636466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.562 5.562 4 C 0.236 3.764 5 C -0.531 4.531 6 H 0.042 0.958 7 C 0.029 3.971 8 N -0.914 5.914 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.559 6.559 15 C 0.500 3.500 16 O -0.470 6.470 17 N -0.643 5.643 18 C 0.140 3.860 19 C -0.069 4.069 20 C -0.093 4.093 21 C -0.026 4.026 22 C -0.130 4.130 23 C -0.047 4.047 24 N 0.037 4.963 25 O -0.203 6.203 26 O -0.146 6.146 27 C -0.079 4.079 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.021 0.979 34 H 0.064 0.936 35 H 0.265 0.735 36 H 0.431 0.569 37 H 0.148 0.852 38 H 0.182 0.818 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 7.036 10.589 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.292 5.292 4 C 0.116 3.884 5 C -0.570 4.570 6 H 0.060 0.940 7 C -0.171 4.171 8 N -0.553 5.553 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.288 3.712 14 O -0.440 6.440 15 C 0.282 3.718 16 O -0.340 6.340 17 N -0.293 5.293 18 C 0.044 3.956 19 C -0.089 4.089 20 C -0.112 4.112 21 C -0.028 4.028 22 C -0.186 4.186 23 C -0.131 4.131 24 N 0.551 4.449 25 O -0.409 6.409 26 O -0.366 6.366 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.271 0.729 37 H 0.166 0.834 38 H 0.200 0.800 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.261 6.910 9.711 12.357 hybrid contribution 1.301 -0.478 0.065 1.388 sum -1.960 6.431 9.776 11.865 Atomic orbital electron populations 1.22036 0.93867 1.03615 1.01655 1.21714 0.95796 0.81063 1.03516 1.48315 1.59026 1.14664 1.07204 1.19708 0.95984 0.93783 0.78911 1.21400 0.94742 1.33922 1.06892 0.93963 1.25428 1.00525 0.94656 0.96521 1.69982 1.35135 1.35161 1.15040 0.85844 0.81164 0.78486 0.77517 1.19416 1.20379 1.20925 1.19721 0.79733 0.87262 0.84511 1.90660 1.55693 1.66174 1.31506 1.20454 0.79011 0.88677 0.83647 1.90889 1.47570 1.64754 1.30787 1.43011 1.62918 1.12657 1.10682 1.17440 0.95076 0.84761 0.98321 1.21927 0.98451 0.92292 0.96263 1.21374 0.95379 0.96237 0.98222 1.20232 0.94014 0.97297 0.91301 1.21365 1.02516 0.89067 1.05652 1.20696 0.97037 0.96742 0.98640 1.43665 1.00747 1.00185 1.00317 1.94548 1.61938 1.47826 1.36539 1.94430 1.61695 1.04723 1.75709 1.20665 0.93816 0.95001 1.00553 0.92929 0.88766 0.93097 0.89894 0.89748 0.96065 0.91868 0.92620 0.72860 0.83407 0.80025 0.89403 0.88602 0.88003 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.10 3.28 6.16 86.38 0.53 3.82 16 3 N -0.56 -22.48 2.48 -827.84 -2.05 -24.53 16 4 C 0.24 11.21 4.80 85.64 0.41 11.63 16 5 C -0.53 -27.98 8.37 25.60 0.21 -27.76 16 6 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 7 C 0.03 1.56 5.46 84.65 0.46 2.02 16 8 N -0.91 -50.97 13.29 21.44 0.28 -50.68 16 9 Si 0.94 43.06 29.54 68.60 2.03 45.09 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.51 19.47 7.66 87.24 0.67 20.14 16 14 O -0.56 -21.15 15.98 -3.27 -0.05 -21.20 16 15 C 0.50 18.36 7.58 87.24 0.66 19.02 16 16 O -0.47 -20.08 9.93 -3.35 -0.03 -20.11 16 17 N -0.64 -18.38 5.32 -304.83 -1.62 -20.00 16 18 C 0.14 3.74 6.28 38.22 0.24 3.98 16 19 C -0.07 -1.79 8.68 22.40 0.19 -1.60 16 20 C -0.09 -1.89 9.66 22.25 0.21 -1.67 16 21 C -0.03 -0.55 5.88 -19.84 -0.12 -0.66 16 22 C -0.13 -2.04 8.66 71.24 0.62 -1.42 16 23 C -0.05 -1.17 6.84 36.35 0.25 -0.92 16 24 N 0.04 1.01 4.45 -46.51 -0.21 0.80 16 25 O -0.20 -6.05 18.45 18.88 0.35 -5.70 16 26 O -0.15 -3.81 15.32 18.88 0.29 -3.52 16 27 C -0.08 -1.96 9.48 22.40 0.21 -1.75 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 2.69 8.11 -2.39 -0.02 2.67 16 32 H 0.08 2.65 7.26 -2.39 -0.02 2.63 16 33 H 0.02 1.06 8.01 -2.39 -0.02 1.04 16 34 H 0.06 3.24 5.33 -2.83 -0.02 3.23 16 35 H 0.26 14.09 8.31 -92.71 -0.77 13.31 16 36 H 0.43 10.35 8.30 -92.71 -0.77 9.58 16 37 H 0.15 4.28 6.31 -2.91 -0.02 4.26 16 38 H 0.18 2.49 8.03 -2.91 -0.02 2.47 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.10 1.61 5.87 -2.39 -0.01 1.59 16 41 H 0.10 1.03 7.99 -2.39 -0.02 1.01 16 42 H 0.16 3.68 7.61 -2.91 -0.02 3.66 16 Total: -1.00 -64.36 363.33 4.59 -59.77 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.31 Total: 18.63 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 5.30 Total: 21.46 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -3.60 Total: -94.41 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: 0.55 Total: -50.54 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -64.36 4.59 -59.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123885931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.592 kcal (2) G-P(sol) polarization free energy of solvation -64.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds