Wall clock time and date at job start Tue Mar 31 2020 19:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35652 * 116.99534 * 2 1 4 4 C 1.38707 * 120.15510 * 359.97438 * 3 2 1 5 5 C 1.38050 * 120.08971 * 180.02562 * 4 3 2 6 6 C 1.38552 * 120.38565 * 0.02562 * 5 4 3 7 7 N 1.48019 * 119.84878 * 179.97438 * 6 5 4 8 8 O 1.21806 * 120.00172 * 359.97438 * 7 6 5 9 9 O 1.21805 * 120.00311 * 180.02562 * 7 6 5 10 10 C 1.37784 * 120.30400 * 359.73976 * 6 5 4 11 11 C 1.39715 * 119.90426 * 0.51242 * 10 6 5 12 12 C 1.47532 * 120.19056 * 179.76693 * 11 10 6 13 13 O 1.21594 * 119.99980 * 224.95654 * 12 11 10 14 14 N 1.34778 * 120.00247 * 44.95402 * 12 11 10 15 15 C 1.46962 * 120.59785 * 185.38489 * 14 12 11 16 16 C 1.53368 * 108.63642 * 235.20769 * 15 14 12 17 17 N 1.46966 * 108.63287 * 310.57561 * 16 15 14 18 18 C 1.36942 * 120.59126 * 235.20304 * 17 16 15 19 19 H 1.07995 * 120.00108 * 32.00737 * 18 17 16 20 20 C 1.38817 * 119.99832 * 212.28570 * 18 17 16 21 21 N 1.31622 * 119.99669 * 10.64284 * 20 18 17 22 22 Si 1.86794 * 119.99769 * 190.64016 * 20 18 17 23 23 H 1.48499 * 109.46970 * 90.00260 * 22 20 18 24 24 H 1.48502 * 109.46852 * 209.99881 * 22 20 18 25 25 H 1.48498 * 109.47346 * 330.00028 * 22 20 18 26 26 C 1.46961 * 118.81649 * 55.47833 * 17 16 15 27 27 C 1.46966 * 120.59007 * 5.36452 * 14 12 11 28 28 H 1.09002 * 109.46925 * 299.99390 * 1 2 3 29 29 H 1.08993 * 109.47570 * 60.00090 * 1 2 3 30 30 H 1.08998 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.95205 * 0.04143 * 4 3 2 32 32 H 1.07993 * 119.80841 * 180.02562 * 5 4 3 33 33 H 1.08003 * 120.05073 * 180.27601 * 10 6 5 34 34 H 1.08998 * 109.61166 * 115.45905 * 15 14 12 35 35 H 1.09007 * 109.60631 * 354.94766 * 15 14 12 36 36 H 1.08997 * 109.61585 * 190.82861 * 16 15 14 37 37 H 1.09002 * 109.61082 * 70.31839 * 16 15 14 38 38 H 0.96999 * 119.99647 * 179.97438 * 21 20 18 39 39 H 1.09001 * 109.61144 * 64.26199 * 26 17 16 40 40 H 1.08999 * 109.61565 * 184.78027 * 26 17 16 41 41 H 1.09002 * 109.60905 * 244.53792 * 27 14 12 42 42 H 1.08998 * 109.61403 * 5.04711 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 -0.0005 5 6 1.9204 3.6034 -0.0011 6 6 3.3036 3.6837 -0.0016 7 7 3.9646 5.0081 -0.0028 8 8 3.2928 6.0241 -0.0037 9 8 5.1804 5.0820 -0.0037 10 6 4.0667 2.5365 0.0038 11 6 3.4441 1.2858 -0.0010 12 6 4.2550 0.0533 -0.0005 13 8 3.9694 -0.8627 -0.7474 14 7 5.3124 -0.0573 0.8279 15 6 6.1985 -1.2277 0.7576 16 6 6.2701 -1.8724 2.1473 17 7 6.5579 -0.8245 3.1368 18 6 7.6322 -0.9369 3.9785 19 1 8.5275 -1.4417 3.6469 20 6 7.5684 -0.4070 5.2600 21 7 6.4180 0.0144 5.7413 22 14 9.1149 -0.2920 6.3012 23 1 9.7769 1.0155 6.0616 24 1 8.7547 -0.4087 7.7371 25 1 10.0427 -1.3914 5.9326 26 6 5.6686 0.3432 3.2110 27 6 5.6002 0.9905 1.8174 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2138 2.3194 -0.0003 32 1 1.3302 4.5077 -0.0011 33 1 5.1446 2.6039 0.0078 34 1 7.1954 -0.9137 0.4481 35 1 5.7996 -1.9460 0.0412 36 1 7.0640 -2.6190 2.1638 37 1 5.3158 -2.3443 2.3813 38 1 6.3734 0.3843 6.6368 39 1 4.6724 0.0254 3.5189 40 1 6.0652 1.0600 3.9299 41 1 6.5545 1.4625 1.5834 42 1 4.8063 1.7372 1.8010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130137882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:33 Heat of formation + Delta-G solvation = -3.695452 kcal Electronic energy + Delta-G solvation = -29667.648067 eV Core-core repulsion = 25425.200992 eV Total energy + Delta-G solvation = -4242.447075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.26659 -41.03615 -39.39243 -37.90729 -36.82966 -36.59825 -34.01856 -32.46829 -31.53557 -31.07859 -30.16491 -28.17046 -27.12513 -26.08131 -24.72338 -23.34545 -23.11594 -22.26730 -20.99937 -19.75983 -18.78442 -18.71116 -18.28774 -17.58344 -17.21913 -16.80144 -16.31576 -16.15158 -15.65505 -14.97924 -14.95442 -14.75591 -14.26857 -13.85799 -13.76533 -13.64027 -13.37324 -13.31287 -13.24573 -12.69180 -12.34394 -11.86771 -11.82754 -11.67061 -11.58292 -11.34133 -11.28155 -11.17281 -10.90325 -10.81539 -10.55782 -10.29736 -10.18002 -9.94755 -9.84421 -9.51969 -9.09788 -8.64561 -8.37490 -6.72987 -5.90374 -3.41054 -0.26820 0.34239 1.17026 1.29064 2.56809 2.63727 2.99563 3.30473 3.32226 3.39346 3.40103 3.96265 4.07218 4.26316 4.39103 4.42615 4.66521 4.72129 4.72684 5.03089 5.03955 5.13871 5.20940 5.29427 5.31799 5.39262 5.67106 5.71350 5.76643 5.86100 6.01348 6.09955 6.25495 6.27768 6.33841 6.66771 6.72853 6.83486 7.11847 7.40256 7.59029 7.66223 7.72413 8.31840 8.33519 9.07557 9.67862 10.26202 11.17164 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.003955 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.439472 B = 7077.962161 C = 8450.318163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.278 6.278 3 C 0.227 3.773 4 C -0.216 4.216 5 C 0.003 3.997 6 C -0.092 4.092 7 N 0.037 4.963 8 O -0.168 6.168 9 O -0.159 6.159 10 C 0.019 3.981 11 C -0.153 4.153 12 C 0.561 3.439 13 O -0.534 6.534 14 N -0.587 5.587 15 C 0.096 3.904 16 C 0.131 3.869 17 N -0.590 5.590 18 C -0.257 4.257 19 H 0.068 0.932 20 C 0.007 3.993 21 N -0.905 5.905 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.161 3.839 27 C 0.071 3.929 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.256 0.744 39 H 0.023 0.977 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.698 4.822 -11.858 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.188 6.188 3 C 0.177 3.823 4 C -0.235 4.235 5 C -0.017 4.017 6 C -0.176 4.176 7 N 0.556 4.444 8 O -0.382 6.382 9 O -0.375 6.375 10 C -0.001 4.001 11 C -0.158 4.158 12 C 0.348 3.652 13 O -0.412 6.412 14 N -0.318 5.318 15 C -0.027 4.027 16 C 0.004 3.996 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.085 0.915 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.737 3.263 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.203 1.203 26 C 0.034 3.966 27 C -0.053 4.053 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.175 0.825 32 H 0.177 0.823 33 H 0.184 0.816 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.094 3.521 -12.045 18.137 hybrid contribution 0.587 0.697 0.767 1.191 sum -12.507 4.218 -11.278 17.361 Atomic orbital electron populations 1.23343 0.77153 1.05355 1.01857 1.86322 1.22245 1.25076 1.85139 1.19285 0.90926 0.85343 0.86771 1.21201 1.01349 0.90329 1.10610 1.20876 0.91427 0.99571 0.89797 1.20767 0.93295 0.82964 1.20600 1.43426 1.01099 1.02606 0.97308 1.94516 1.64771 1.24914 1.54002 1.94580 0.95684 1.93728 1.53498 1.21082 1.02156 0.88418 0.88406 1.19263 0.91189 0.94164 1.11169 1.17642 0.80556 0.85785 0.81237 1.90775 1.69309 1.39487 1.41609 1.47992 1.26647 1.22943 1.34250 1.22296 0.92631 0.87298 1.00482 1.21318 0.98967 0.91597 0.87697 1.43958 1.30666 1.17428 1.39261 1.19217 0.91724 1.35613 0.92136 0.91450 1.25209 0.96671 1.01070 0.96264 1.69941 1.23078 1.45181 1.16738 0.86213 0.82433 0.78162 0.79482 1.21193 1.21639 1.20305 1.21269 0.93875 0.90771 0.90675 1.23066 1.00172 0.89741 0.92348 0.91733 0.91813 0.87150 0.82510 0.82302 0.81581 0.91453 0.89729 0.91281 0.95759 0.93388 0.95875 0.87881 0.91019 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.28 -3.47 9.43 -31.30 -0.30 -3.77 16 3 C 0.23 2.76 6.67 -38.70 -0.26 2.51 16 4 C -0.22 -1.87 9.03 -39.48 -0.36 -2.23 16 5 C 0.00 0.02 9.54 -39.53 -0.38 -0.35 16 6 C -0.09 -1.13 6.84 -80.00 -0.55 -1.68 16 7 N 0.04 0.53 4.45 33.94 0.15 0.68 16 8 O -0.17 -2.35 18.43 -29.46 -0.54 -2.89 16 9 O -0.16 -2.43 18.43 -29.46 -0.54 -2.97 16 10 C 0.02 0.25 6.92 -39.20 -0.27 -0.02 16 11 C -0.15 -2.19 4.99 -104.84 -0.52 -2.72 16 12 C 0.56 9.79 7.03 -12.47 -0.09 9.71 16 13 O -0.53 -10.58 15.78 -7.36 -0.12 -10.70 16 14 N -0.59 -10.47 2.95 -173.44 -0.51 -10.98 16 15 C 0.10 1.72 6.60 -3.60 -0.02 1.70 16 16 C 0.13 2.69 6.67 -3.60 -0.02 2.66 16 17 N -0.59 -14.14 2.95 -171.77 -0.51 -14.65 16 18 C -0.26 -6.73 9.57 -15.05 -0.14 -6.88 16 19 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 20 C 0.01 0.18 5.05 -17.43 -0.09 0.09 16 21 N -0.91 -25.21 11.06 55.49 0.61 -24.60 16 22 Si 0.91 20.96 29.57 -169.99 -5.03 15.93 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.16 3.63 5.48 -3.37 -0.02 3.61 16 27 C 0.07 1.26 5.30 -3.36 -0.02 1.25 16 28 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.16 0.79 6.30 -52.48 -0.33 0.46 16 32 H 0.16 1.12 7.59 -52.49 -0.40 0.72 16 33 H 0.17 2.15 6.55 -52.48 -0.34 1.81 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.46 6.99 -51.92 -0.36 1.10 16 36 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 2.58 6.06 -51.93 -0.31 2.26 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.07 4.86 -51.93 -0.25 0.82 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -32.46 352.34 -8.08 -40.55 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.87 Total: -0.66 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -1.75 Total: 8.75 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.25 Total: -49.55 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.50 Total: -20.33 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.46 -8.08 -40.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130137882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.851 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds