Wall clock time and date at job start Tue Mar 31 2020 19:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35652 * 116.99534 * 2 1 4 4 C 1.38707 * 120.15510 * 359.97438 * 3 2 1 5 5 C 1.38050 * 120.08971 * 180.02562 * 4 3 2 6 6 C 1.38552 * 120.38565 * 0.02562 * 5 4 3 7 7 N 1.48019 * 119.84878 * 179.97438 * 6 5 4 8 8 O 1.21806 * 120.00172 * 359.97438 * 7 6 5 9 9 O 1.21805 * 120.00311 * 180.02562 * 7 6 5 10 10 C 1.37784 * 120.30400 * 359.73976 * 6 5 4 11 11 C 1.39715 * 119.90426 * 0.51242 * 10 6 5 12 12 C 1.47532 * 120.19056 * 179.76693 * 11 10 6 13 13 O 1.21594 * 119.99980 * 224.95654 * 12 11 10 14 14 N 1.34778 * 120.00247 * 44.95402 * 12 11 10 15 15 C 1.46962 * 120.59785 * 185.38489 * 14 12 11 16 16 C 1.53368 * 108.63642 * 235.20769 * 15 14 12 17 17 N 1.46966 * 108.63287 * 310.57561 * 16 15 14 18 18 C 1.36942 * 120.59126 * 235.20304 * 17 16 15 19 19 H 1.07995 * 120.00108 * 32.00737 * 18 17 16 20 20 C 1.38817 * 119.99832 * 212.28570 * 18 17 16 21 21 N 1.31622 * 119.99669 * 10.64284 * 20 18 17 22 22 Si 1.86794 * 119.99769 * 190.64016 * 20 18 17 23 23 H 1.48499 * 109.46970 * 90.00260 * 22 20 18 24 24 H 1.48502 * 109.46852 * 209.99881 * 22 20 18 25 25 H 1.48498 * 109.47346 * 330.00028 * 22 20 18 26 26 C 1.46961 * 118.81649 * 55.47833 * 17 16 15 27 27 C 1.46966 * 120.59007 * 5.36452 * 14 12 11 28 28 H 1.09002 * 109.46925 * 299.99390 * 1 2 3 29 29 H 1.08993 * 109.47570 * 60.00090 * 1 2 3 30 30 H 1.08998 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.95205 * 0.04143 * 4 3 2 32 32 H 1.07993 * 119.80841 * 180.02562 * 5 4 3 33 33 H 1.08003 * 120.05073 * 180.27601 * 10 6 5 34 34 H 1.08998 * 109.61166 * 115.45905 * 15 14 12 35 35 H 1.09007 * 109.60631 * 354.94766 * 15 14 12 36 36 H 1.08997 * 109.61585 * 190.82861 * 16 15 14 37 37 H 1.09002 * 109.61082 * 70.31839 * 16 15 14 38 38 H 0.96999 * 119.99647 * 179.97438 * 21 20 18 39 39 H 1.09001 * 109.61144 * 64.26199 * 26 17 16 40 40 H 1.08999 * 109.61565 * 184.78027 * 26 17 16 41 41 H 1.09002 * 109.60905 * 244.53792 * 27 14 12 42 42 H 1.08998 * 109.61403 * 5.04711 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 -0.0005 5 6 1.9204 3.6034 -0.0011 6 6 3.3036 3.6837 -0.0016 7 7 3.9646 5.0081 -0.0028 8 8 3.2928 6.0241 -0.0037 9 8 5.1804 5.0820 -0.0037 10 6 4.0667 2.5365 0.0038 11 6 3.4441 1.2858 -0.0010 12 6 4.2550 0.0533 -0.0005 13 8 3.9694 -0.8627 -0.7474 14 7 5.3124 -0.0573 0.8279 15 6 6.1985 -1.2277 0.7576 16 6 6.2701 -1.8724 2.1473 17 7 6.5579 -0.8245 3.1368 18 6 7.6322 -0.9369 3.9785 19 1 8.5275 -1.4417 3.6469 20 6 7.5684 -0.4070 5.2600 21 7 6.4180 0.0144 5.7413 22 14 9.1149 -0.2920 6.3012 23 1 9.7769 1.0155 6.0616 24 1 8.7547 -0.4087 7.7371 25 1 10.0427 -1.3914 5.9326 26 6 5.6686 0.3432 3.2110 27 6 5.6002 0.9905 1.8174 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2138 2.3194 -0.0003 32 1 1.3302 4.5077 -0.0011 33 1 5.1446 2.6039 0.0078 34 1 7.1954 -0.9137 0.4481 35 1 5.7996 -1.9460 0.0412 36 1 7.0640 -2.6190 2.1638 37 1 5.3158 -2.3443 2.3813 38 1 6.3734 0.3843 6.6368 39 1 4.6724 0.0254 3.5189 40 1 6.0652 1.0600 3.9299 41 1 6.5545 1.4625 1.5834 42 1 4.8063 1.7372 1.8010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130137882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:32 Heat of formation + Delta-G solvation = -23.046319 kcal Electronic energy + Delta-G solvation = -29668.487184 eV Core-core repulsion = 25425.200992 eV Total energy + Delta-G solvation = -4243.286192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.29448 -42.06479 -40.62428 -38.82363 -38.45151 -37.66732 -35.71331 -33.78034 -32.68821 -32.41728 -31.75446 -28.96070 -28.70522 -27.00334 -26.15838 -24.88727 -24.52622 -23.29352 -22.41084 -21.11843 -19.88338 -19.77403 -19.40837 -18.67438 -18.60201 -17.91236 -17.61097 -17.19057 -16.95659 -16.62941 -16.20406 -15.83675 -15.52322 -15.35317 -15.19026 -14.98304 -14.86019 -14.56166 -14.24198 -13.90512 -13.40350 -13.34733 -13.15525 -12.73302 -12.72062 -12.55240 -12.51473 -12.44204 -12.32158 -12.28083 -12.24885 -12.07281 -12.00426 -11.72494 -11.15166 -10.66142 -10.54233 -10.04166 -9.88988 -8.66110 -7.91170 -5.45643 -1.25428 -0.56589 0.19052 0.30798 1.41230 1.48719 1.49769 1.57984 1.78350 1.89553 2.15605 2.48882 2.99322 3.22480 3.25752 3.41575 3.52355 3.54834 3.73541 4.07661 4.10920 4.16558 4.22772 4.24019 4.31953 4.34005 4.45693 4.49641 4.55599 4.60783 4.68302 4.73686 4.75586 4.89191 5.01880 5.16740 5.25747 5.42236 5.54752 5.61307 5.94702 6.28045 6.35118 6.49138 6.93493 7.08477 7.73706 8.28988 9.13927 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.003955 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.439472 B = 7077.962161 C = 8450.318163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.311 6.311 3 C 0.225 3.775 4 C -0.193 4.193 5 C 0.019 3.981 6 C -0.103 4.103 7 N 0.039 4.961 8 O -0.149 6.149 9 O -0.208 6.208 10 C 0.018 3.982 11 C -0.183 4.183 12 C 0.563 3.437 13 O -0.562 6.562 14 N -0.594 5.594 15 C 0.105 3.895 16 C 0.132 3.868 17 N -0.607 5.607 18 C -0.267 4.267 19 H 0.071 0.929 20 C -0.043 4.043 21 N -0.936 5.936 22 Si 0.971 3.029 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.169 3.831 27 C 0.091 3.909 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.204 0.796 32 H 0.193 0.807 33 H 0.159 0.841 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.009 0.991 38 H 0.252 0.748 39 H -0.003 1.003 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 5.812 -12.808 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.221 6.221 3 C 0.175 3.825 4 C -0.211 4.211 5 C 0.000 4.000 6 C -0.187 4.187 7 N 0.554 4.446 8 O -0.371 6.371 9 O -0.413 6.413 10 C -0.002 4.002 11 C -0.188 4.188 12 C 0.352 3.648 13 O -0.442 6.442 14 N -0.325 5.325 15 C -0.018 4.018 16 C 0.006 3.994 17 N -0.331 5.331 18 C -0.396 4.396 19 H 0.089 0.911 20 C -0.239 4.239 21 N -0.581 5.581 22 Si 0.799 3.201 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.193 1.193 26 C 0.042 3.958 27 C -0.033 4.033 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.221 0.779 32 H 0.210 0.790 33 H 0.176 0.824 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.027 0.973 38 H 0.061 0.939 39 H 0.015 0.985 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.899 4.477 -13.024 20.289 hybrid contribution 0.947 0.327 1.017 1.427 sum -13.952 4.805 -12.008 19.024 Atomic orbital electron populations 1.23751 0.74281 1.06766 1.04139 1.86288 1.25347 1.25685 1.84804 1.19498 0.90319 0.86631 0.86090 1.21624 1.03174 0.88340 1.07991 1.21331 0.90116 1.01174 0.87340 1.20876 0.94350 0.81538 1.21932 1.43650 1.00949 1.03195 0.96822 1.94478 1.64483 1.25590 1.52528 1.94595 0.96447 1.94089 1.56134 1.20928 1.02007 0.88553 0.88712 1.19050 0.92247 0.92875 1.14596 1.18075 0.79977 0.86558 0.80198 1.90742 1.69839 1.40996 1.42582 1.48029 1.27138 1.22806 1.34520 1.22139 0.93471 0.87566 0.98629 1.21380 0.98390 0.91291 0.88334 1.44205 1.30452 1.18753 1.39670 1.19542 0.92474 1.35052 0.92572 0.91100 1.25926 0.99231 1.01276 0.97419 1.70101 1.24917 1.46340 1.16788 0.85222 0.79298 0.78263 0.77363 1.20926 1.22240 1.19293 1.21040 0.91915 0.90082 0.92771 1.22750 1.01382 0.89626 0.89536 0.89628 0.89149 0.86503 0.77926 0.79017 0.82381 0.90332 0.89032 0.90388 0.97322 0.93871 0.98510 0.90562 0.90455 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 -7.17 9.43 -77.59 -0.73 -7.90 16 3 C 0.23 4.97 6.67 22.84 0.15 5.12 16 4 C -0.19 -2.49 9.03 22.34 0.20 -2.29 16 5 C 0.02 0.28 9.54 22.30 0.21 0.50 16 6 C -0.10 -2.31 6.84 36.34 0.25 -2.06 16 7 N 0.04 1.05 4.45 -46.54 -0.21 0.84 16 8 O -0.15 -3.84 18.43 18.88 0.35 -3.49 16 9 O -0.21 -6.43 18.43 18.88 0.35 -6.09 16 10 C 0.02 0.45 6.92 22.52 0.16 0.61 16 11 C -0.18 -5.10 4.99 -20.01 -0.10 -5.20 16 12 C 0.56 19.71 7.03 86.69 0.61 20.32 16 13 O -0.56 -22.38 15.78 8.08 0.13 -22.26 16 14 N -0.59 -21.37 2.95 -820.90 -2.42 -23.79 16 15 C 0.11 3.77 6.60 86.41 0.57 4.34 16 16 C 0.13 5.51 6.67 86.41 0.58 6.09 16 17 N -0.61 -29.76 2.95 -697.34 -2.06 -31.82 16 18 C -0.27 -14.13 9.57 84.03 0.80 -13.32 16 19 H 0.07 3.63 7.85 -2.91 -0.02 3.61 16 20 C -0.04 -2.30 5.05 84.86 0.43 -1.87 16 21 N -0.94 -53.56 11.06 21.65 0.24 -53.32 16 22 Si 0.97 43.54 29.57 68.60 2.03 45.57 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 C 0.17 7.87 5.48 86.57 0.47 8.34 16 27 C 0.09 3.31 5.30 86.57 0.46 3.76 16 28 H 0.09 0.51 7.66 -2.39 -0.02 0.49 16 29 H 0.09 0.43 7.66 -2.39 -0.02 0.42 16 30 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.20 0.72 6.30 -2.91 -0.02 0.71 16 32 H 0.19 1.60 7.59 -2.91 -0.02 1.58 16 33 H 0.16 4.17 6.55 -2.91 -0.02 4.15 16 34 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.09 3.16 6.99 -2.38 -0.02 3.15 16 36 H 0.08 3.05 7.93 -2.39 -0.02 3.03 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.08 3.98 6.06 -2.39 -0.01 3.96 16 41 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.09 2.83 4.86 -2.39 -0.01 2.82 16 Total: -1.00 -73.06 352.34 4.65 -68.41 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.07 Total: 8.35 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: 5.91 Total: 25.49 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -4.44 Total: -108.09 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: 0.09 Total: -39.73 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -73.06 4.65 -68.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130137882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.362 kcal (2) G-P(sol) polarization free energy of solvation -73.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds