Wall clock time and date at job start Tue Mar 31 2020 18:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45204 * 109.46613 * 2 1 4 4 C 1.34758 * 116.99112 * 179.97438 * 3 2 1 5 5 O 1.21524 * 120.00418 * 0.02562 * 4 3 2 6 6 C 1.47286 * 119.99458 * 179.97438 * 4 3 2 7 7 C 1.41346 * 126.42804 * 359.97438 * 6 4 3 8 8 N 1.30431 * 108.01452 * 179.77682 * 7 6 4 9 9 N 1.39935 * 108.91727 * 0.38742 * 8 7 6 10 10 C 1.46498 * 125.74422 * 179.87701 * 9 8 7 11 11 N 1.46907 * 109.46842 * 274.68417 * 10 9 8 12 12 C 1.46897 * 110.99788 * 186.96479 * 11 10 9 13 13 C 1.50702 * 109.46969 * 176.99792 * 12 11 10 14 14 H 1.08002 * 120.00056 * 4.81667 * 13 12 11 15 15 C 1.37875 * 120.00209 * 184.81580 * 13 12 11 16 16 N 1.31510 * 119.99737 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00036 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47116 * 89.99968 * 17 15 13 19 19 H 1.48505 * 109.46829 * 209.99852 * 17 15 13 20 20 H 1.48496 * 109.47424 * 329.99962 * 17 15 13 21 21 C 1.46901 * 110.99682 * 63.01177 * 11 10 9 22 22 C 1.53001 * 109.47463 * 63.22330 * 21 11 10 23 23 F 1.39901 * 109.47182 * 59.17320 * 22 21 11 24 24 F 1.39899 * 109.47389 * 179.17859 * 22 21 11 25 25 F 1.39910 * 109.46966 * 299.17487 * 22 21 11 26 26 C 1.34226 * 108.51316 * 359.60614 * 9 8 7 27 27 H 1.08993 * 109.47021 * 60.00213 * 1 2 3 28 28 H 1.09000 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46995 * 299.99823 * 1 2 3 30 30 H 1.08991 * 109.46840 * 240.00015 * 2 1 3 31 31 H 1.08998 * 109.46573 * 119.99854 * 2 1 3 32 32 H 1.07993 * 125.99642 * 359.97438 * 7 6 4 33 33 H 1.09001 * 109.47276 * 34.68404 * 10 9 8 34 34 H 1.08996 * 109.47418 * 154.68854 * 10 9 8 35 35 H 1.09003 * 109.47273 * 296.99435 * 12 11 10 36 36 H 1.08992 * 109.47059 * 56.99706 * 12 11 10 37 37 H 0.97002 * 119.99952 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47037 * 183.22187 * 21 11 10 39 39 H 1.08995 * 109.47161 * 303.22144 * 21 11 10 40 40 H 1.07998 * 126.29383 * 180.23531 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0902 0.5818 0.0005 6 6 3.9129 2.9066 0.0000 7 6 3.1827 4.1168 -0.0016 8 7 4.0364 5.1029 0.0033 9 7 5.3342 4.5795 -0.0009 10 6 6.5726 5.3622 -0.0001 11 7 6.9237 5.7244 -1.3798 12 6 8.2436 6.3668 -1.4357 13 6 8.6009 6.6566 -2.8708 14 1 7.8847 6.4620 -3.6554 15 6 9.8420 7.1701 -3.1821 16 7 10.7138 7.4076 -2.2266 17 14 10.2845 7.5299 -4.9609 18 1 9.8986 8.9246 -5.2946 19 1 11.7478 7.3623 -5.1505 20 1 9.5589 6.5890 -5.8516 21 6 5.8936 6.5851 -1.9764 22 6 5.8155 7.9008 -1.1995 23 9 7.0593 8.5401 -1.2386 24 9 4.8475 8.7280 -1.7791 25 9 5.4682 7.6374 0.1300 26 6 5.2534 3.2397 0.0004 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1067 4.2090 -0.0030 33 1 6.4293 6.2685 0.5883 34 1 7.3768 4.7694 0.4358 35 1 8.2179 7.2996 -0.8722 36 1 8.9902 5.7013 -1.0026 37 1 11.5869 7.7693 -2.4455 38 1 6.1498 6.7915 -3.0156 39 1 4.9287 6.0800 -1.9336 40 1 6.0838 2.5492 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133318080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:34 Heat of formation + Delta-G solvation = -133.168263 kcal Electronic energy + Delta-G solvation = -29799.003847 eV Core-core repulsion = 25009.085669 eV Total energy + Delta-G solvation = -4789.918178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.67923 -47.20813 -47.02797 -41.39200 -39.94342 -37.16421 -36.47578 -33.10761 -32.26437 -31.79487 -30.33607 -28.95198 -27.49713 -25.00735 -23.89050 -23.18939 -22.48902 -21.33108 -20.75161 -20.31569 -18.31383 -18.15440 -18.01542 -17.06881 -16.69439 -16.59128 -16.02986 -15.80032 -15.59812 -14.81932 -14.70666 -14.43381 -14.20564 -14.09821 -13.88476 -13.64897 -13.61428 -13.42626 -13.14965 -13.07372 -12.85458 -12.78976 -12.43799 -12.10184 -11.96266 -11.81866 -11.66741 -11.40693 -11.27444 -11.05595 -10.91904 -10.64399 -10.64170 -10.27068 -10.17158 -9.66466 -9.45494 -8.85813 -8.61150 -7.81065 -6.19945 -4.22531 1.39807 2.09815 2.27167 2.80234 3.23636 3.24344 3.30607 3.33217 3.36305 4.10905 4.34087 4.36086 4.53367 4.64020 4.72125 4.72571 4.76944 4.85429 4.94810 5.05656 5.12408 5.19043 5.37437 5.47163 5.54076 5.54542 5.62819 5.67893 5.77231 5.98263 6.36518 6.47348 6.57803 6.71762 7.01067 7.36638 7.52141 7.59112 7.84009 7.86898 8.12481 8.79027 9.41891 10.91031 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.003059 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.846531 B = 9151.567259 C =10023.115685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.356 6.356 4 C 0.549 3.451 5 O -0.526 6.526 6 C -0.298 4.298 7 C 0.097 3.903 8 N -0.293 5.293 9 N -0.338 5.338 10 C 0.252 3.748 11 N -0.530 5.530 12 C 0.162 3.838 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.025 3.975 22 C 0.414 3.586 23 F -0.157 7.157 24 F -0.196 7.196 25 F -0.185 7.185 26 C 0.161 3.839 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.193 0.807 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.037 0.963 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.031 -8.308 5.718 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.273 6.273 4 C 0.395 3.605 5 O -0.416 6.416 6 C -0.312 4.312 7 C -0.091 4.091 8 N -0.112 5.112 9 N -0.115 5.115 10 C 0.042 3.958 11 N -0.254 5.254 12 C 0.039 3.961 13 C -0.553 4.553 14 H 0.081 0.919 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.726 3.274 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.106 4.106 22 C 0.357 3.643 23 F -0.138 7.138 24 F -0.178 7.178 25 F -0.166 7.166 26 C 0.007 3.993 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.210 0.790 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.291 -7.573 5.508 17.931 hybrid contribution 0.295 0.019 -0.411 0.506 sum -14.996 -7.554 5.098 17.548 Atomic orbital electron populations 1.21804 0.92754 1.02825 1.03549 1.22971 0.95134 0.80326 1.02546 1.86534 1.24062 1.31957 1.84757 1.19978 0.80136 0.88428 0.71933 1.90830 1.60382 1.42431 1.47927 1.19202 0.92576 0.91437 1.27941 1.24140 1.00123 0.88716 0.96164 1.77309 0.87048 1.22735 1.24084 1.48802 1.06442 1.04256 1.52035 1.23217 0.81260 0.97593 0.93706 1.62436 1.05194 1.42609 1.15183 1.20549 0.80979 0.94635 0.99917 1.20912 0.99956 1.43033 0.91391 0.91881 1.24896 0.96064 0.95253 0.97670 1.69925 1.06876 1.44019 1.32114 0.86486 0.77700 0.78758 0.84473 1.20534 1.21097 1.19708 1.23606 0.98995 0.86570 1.01411 1.22583 0.73736 0.89592 0.78350 1.93221 1.40442 1.84090 1.96058 1.93123 1.64770 1.75655 1.84272 1.92969 1.92055 1.93335 1.38286 1.23002 0.97680 0.86106 0.92526 0.91430 0.90384 0.91494 0.91290 0.91360 0.79025 0.87736 0.86861 0.94533 0.93957 0.92628 0.85393 0.87826 0.79350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.58 6.20 37.16 0.23 0.81 16 3 O -0.36 -4.12 10.07 -40.65 -0.41 -4.53 16 4 C 0.55 7.47 7.95 34.41 0.27 7.75 16 5 O -0.53 -8.33 16.69 -19.28 -0.32 -8.65 16 6 C -0.30 -3.98 6.13 -105.08 -0.64 -4.62 16 7 C 0.10 1.22 11.87 -16.97 -0.20 1.02 16 8 N -0.29 -4.32 10.51 30.87 0.32 -4.00 16 9 N -0.34 -4.96 3.32 -63.80 -0.21 -5.17 16 10 C 0.25 3.94 5.61 -63.31 -0.36 3.58 16 11 N -0.53 -9.93 4.91 -239.98 -1.18 -11.11 16 12 C 0.16 3.69 4.18 -4.98 -0.02 3.67 16 13 C -0.51 -13.06 8.17 -34.44 -0.28 -13.34 16 14 H 0.06 1.58 6.43 -52.49 -0.34 1.24 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 17 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 21 C 0.03 0.45 5.16 -3.82 -0.02 0.43 16 22 C 0.41 7.57 3.09 37.16 0.11 7.68 16 23 F -0.16 -3.34 13.29 2.25 0.03 -3.31 16 24 F -0.20 -3.50 17.32 2.25 0.04 -3.46 16 25 F -0.18 -3.23 13.26 2.25 0.03 -3.20 16 26 C 0.16 2.17 11.29 -16.55 -0.19 1.98 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.11 1.70 4.88 -51.93 -0.25 1.44 16 34 H 0.11 1.56 8.06 -51.93 -0.42 1.14 16 35 H 0.04 0.89 5.06 -51.93 -0.26 0.63 16 36 H 0.04 1.03 8.10 -51.93 -0.42 0.60 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.13 2.40 6.30 -51.93 -0.33 2.07 16 39 H 0.10 1.74 6.32 -51.93 -0.33 1.41 16 40 H 0.19 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -29.87 349.18 -5.97 -35.84 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.44 Total: 0.75 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -0.80 Total: 10.01 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.33 Total: -44.27 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.73 Total: -13.18 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 0.10 Total: -9.97 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.87 -5.97 -35.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133318080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.327 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds