Wall clock time and date at job start Tue Mar 31 2020 18:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45204 * 109.46613 * 2 1 4 4 C 1.34758 * 116.99112 * 179.97438 * 3 2 1 5 5 O 1.21524 * 120.00418 * 0.02562 * 4 3 2 6 6 C 1.47286 * 119.99458 * 179.97438 * 4 3 2 7 7 C 1.41346 * 126.42804 * 359.97438 * 6 4 3 8 8 N 1.30431 * 108.01452 * 179.77682 * 7 6 4 9 9 N 1.39935 * 108.91727 * 0.38742 * 8 7 6 10 10 C 1.46498 * 125.74422 * 179.87701 * 9 8 7 11 11 N 1.46907 * 109.46842 * 274.68417 * 10 9 8 12 12 C 1.46897 * 110.99788 * 186.96479 * 11 10 9 13 13 C 1.50702 * 109.46969 * 176.99792 * 12 11 10 14 14 H 1.08002 * 120.00056 * 4.81667 * 13 12 11 15 15 C 1.37875 * 120.00209 * 184.81580 * 13 12 11 16 16 N 1.31510 * 119.99737 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00036 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47116 * 89.99968 * 17 15 13 19 19 H 1.48505 * 109.46829 * 209.99852 * 17 15 13 20 20 H 1.48496 * 109.47424 * 329.99962 * 17 15 13 21 21 C 1.46901 * 110.99682 * 63.01177 * 11 10 9 22 22 C 1.53001 * 109.47463 * 63.22330 * 21 11 10 23 23 F 1.39901 * 109.47182 * 59.17320 * 22 21 11 24 24 F 1.39899 * 109.47389 * 179.17859 * 22 21 11 25 25 F 1.39910 * 109.46966 * 299.17487 * 22 21 11 26 26 C 1.34226 * 108.51316 * 359.60614 * 9 8 7 27 27 H 1.08993 * 109.47021 * 60.00213 * 1 2 3 28 28 H 1.09000 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46995 * 299.99823 * 1 2 3 30 30 H 1.08991 * 109.46840 * 240.00015 * 2 1 3 31 31 H 1.08998 * 109.46573 * 119.99854 * 2 1 3 32 32 H 1.07993 * 125.99642 * 359.97438 * 7 6 4 33 33 H 1.09001 * 109.47276 * 34.68404 * 10 9 8 34 34 H 1.08996 * 109.47418 * 154.68854 * 10 9 8 35 35 H 1.09003 * 109.47273 * 296.99435 * 12 11 10 36 36 H 1.08992 * 109.47059 * 56.99706 * 12 11 10 37 37 H 0.97002 * 119.99952 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47037 * 183.22187 * 21 11 10 39 39 H 1.08995 * 109.47161 * 303.22144 * 21 11 10 40 40 H 1.07998 * 126.29383 * 180.23531 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0902 0.5818 0.0005 6 6 3.9129 2.9066 0.0000 7 6 3.1827 4.1168 -0.0016 8 7 4.0364 5.1029 0.0033 9 7 5.3342 4.5795 -0.0009 10 6 6.5726 5.3622 -0.0001 11 7 6.9237 5.7244 -1.3798 12 6 8.2436 6.3668 -1.4357 13 6 8.6009 6.6566 -2.8708 14 1 7.8847 6.4620 -3.6554 15 6 9.8420 7.1701 -3.1821 16 7 10.7138 7.4076 -2.2266 17 14 10.2845 7.5299 -4.9609 18 1 9.8986 8.9246 -5.2946 19 1 11.7478 7.3623 -5.1505 20 1 9.5589 6.5890 -5.8516 21 6 5.8936 6.5851 -1.9764 22 6 5.8155 7.9008 -1.1995 23 9 7.0593 8.5401 -1.2386 24 9 4.8475 8.7280 -1.7791 25 9 5.4682 7.6374 0.1300 26 6 5.2534 3.2397 0.0004 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1067 4.2090 -0.0030 33 1 6.4293 6.2685 0.5883 34 1 7.3768 4.7694 0.4358 35 1 8.2179 7.2996 -0.8722 36 1 8.9902 5.7013 -1.0026 37 1 11.5869 7.7693 -2.4455 38 1 6.1498 6.7915 -3.0156 39 1 4.9287 6.0800 -1.9336 40 1 6.0838 2.5492 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133318080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:33 Heat of formation + Delta-G solvation = -150.746310 kcal Electronic energy + Delta-G solvation = -29799.766088 eV Core-core repulsion = 25009.085669 eV Total energy + Delta-G solvation = -4790.680419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.18076 -48.66839 -48.58459 -42.46904 -40.95208 -38.64542 -37.47850 -34.86644 -33.57269 -32.56163 -31.37244 -30.51001 -29.07355 -26.39488 -25.00218 -24.70994 -23.33637 -22.82247 -21.94056 -21.35411 -19.71471 -19.63290 -19.36493 -18.47917 -17.86932 -17.66248 -17.51307 -17.13075 -16.88803 -16.40006 -16.08115 -15.89262 -15.47653 -15.30555 -15.29610 -15.01859 -14.72588 -14.67974 -14.54453 -14.33265 -14.13649 -13.90771 -13.49490 -13.48907 -13.16642 -12.97799 -12.94383 -12.83264 -12.67145 -12.52388 -12.40298 -12.10777 -12.03540 -11.44140 -11.38412 -11.35071 -10.77393 -10.59341 -9.94333 -9.37083 -8.20184 -6.27067 0.32408 1.04014 1.18556 1.42932 1.44622 1.53668 1.86180 1.88251 2.20994 2.39956 2.70361 2.90493 3.14348 3.17436 3.36892 3.46016 3.75304 3.97683 4.03620 4.09532 4.14977 4.17042 4.24804 4.40266 4.43424 4.51176 4.62268 4.97281 5.00614 5.01135 5.10849 5.21681 5.42802 5.50395 5.53003 5.60434 5.82420 6.00670 6.27181 6.52750 6.82157 6.85086 7.40449 8.90985 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.003059 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.846531 B = 9151.567259 C =10023.115685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.354 6.354 4 C 0.553 3.447 5 O -0.553 6.553 6 C -0.304 4.304 7 C 0.111 3.889 8 N -0.319 5.319 9 N -0.347 5.347 10 C 0.257 3.743 11 N -0.534 5.534 12 C 0.177 3.823 13 C -0.519 4.519 14 H 0.064 0.936 15 C 0.014 3.986 16 N -0.925 5.925 17 Si 0.956 3.044 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.033 3.967 22 C 0.417 3.583 23 F -0.176 7.176 24 F -0.192 7.192 25 F -0.179 7.179 26 C 0.161 3.839 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.223 0.777 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.831 -9.106 5.381 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 O -0.271 6.271 4 C 0.400 3.600 5 O -0.446 6.446 6 C -0.318 4.318 7 C -0.077 4.077 8 N -0.137 5.137 9 N -0.123 5.123 10 C 0.048 3.952 11 N -0.258 5.258 12 C 0.052 3.948 13 C -0.557 4.557 14 H 0.082 0.918 15 C -0.186 4.186 16 N -0.565 5.565 17 Si 0.782 3.218 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.189 1.189 21 C -0.098 4.098 22 C 0.361 3.639 23 F -0.158 7.158 24 F -0.174 7.174 25 F -0.160 7.160 26 C 0.007 3.993 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.239 0.761 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -17.138 -8.381 5.173 19.767 hybrid contribution 0.703 0.183 -0.248 0.768 sum -16.435 -8.198 4.925 19.015 Atomic orbital electron populations 1.21820 0.90324 1.04312 1.03781 1.23282 0.97002 0.79025 1.02515 1.86531 1.22757 1.33631 1.84166 1.20006 0.80665 0.88100 0.71260 1.90817 1.61150 1.43228 1.49354 1.19307 0.92702 0.91727 1.28020 1.24624 1.01216 0.87775 0.94091 1.77297 0.87199 1.23734 1.25517 1.48619 1.06156 1.04482 1.53090 1.23128 0.82401 0.98014 0.91697 1.62260 1.03916 1.42148 1.17426 1.20154 0.82597 0.93766 0.98240 1.21259 0.99797 1.41941 0.92737 0.91770 1.25653 0.96309 0.95460 1.01142 1.70031 1.07235 1.45386 1.33870 0.85578 0.77303 0.78577 0.80376 1.20354 1.21087 1.18935 1.23544 0.99260 0.86340 1.00663 1.22583 0.73079 0.89535 0.78703 1.93184 1.41941 1.84476 1.96187 1.93128 1.64423 1.75600 1.84234 1.92987 1.91919 1.93269 1.37837 1.23322 0.98487 0.85802 0.91658 0.91271 0.88276 0.91136 0.91522 0.91309 0.76083 0.88192 0.85180 0.95848 0.95778 0.92749 0.86337 0.86355 0.77968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.06 0.90 6.20 71.98 0.45 1.34 16 3 O -0.35 -7.56 10.07 -56.69 -0.57 -8.14 16 4 C 0.55 14.26 7.95 70.20 0.56 14.82 16 5 O -0.55 -17.04 16.69 19.76 0.33 -16.71 16 6 C -0.30 -7.59 6.13 -20.16 -0.12 -7.71 16 7 C 0.11 2.55 11.87 85.67 1.02 3.57 16 8 N -0.32 -8.83 10.51 -56.25 -0.59 -9.42 16 9 N -0.35 -9.68 3.32 -355.77 -1.18 -10.86 16 10 C 0.26 7.83 5.61 170.80 0.96 8.79 16 11 N -0.53 -19.72 4.91 -913.16 -4.48 -24.20 16 12 C 0.18 8.10 4.18 85.56 0.36 8.46 16 13 C -0.52 -26.35 8.17 25.60 0.21 -26.14 16 14 H 0.06 3.18 6.43 -2.91 -0.02 3.16 16 15 C 0.01 0.72 5.46 84.65 0.46 1.18 16 16 N -0.93 -51.95 13.29 21.45 0.28 -51.66 16 17 Si 0.96 42.11 29.54 68.60 2.03 44.13 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 C 0.03 1.15 5.16 86.30 0.45 1.60 16 22 C 0.42 15.01 3.09 71.98 0.22 15.23 16 23 F -0.18 -7.55 13.29 44.97 0.60 -6.95 16 24 F -0.19 -6.64 17.32 44.97 0.78 -5.86 16 25 F -0.18 -6.09 13.26 44.97 0.60 -5.49 16 26 C 0.16 4.10 11.29 84.30 0.95 5.05 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.22 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.10 3.18 4.88 -2.39 -0.01 3.17 16 34 H 0.13 3.47 8.06 -2.39 -0.02 3.45 16 35 H 0.02 1.17 5.06 -2.39 -0.01 1.16 16 36 H 0.02 1.19 8.10 -2.39 -0.02 1.17 16 37 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.12 4.37 6.30 -2.39 -0.02 4.35 16 39 H 0.12 3.80 6.32 -2.39 -0.02 3.79 16 40 H 0.20 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -62.91 349.18 5.13 -57.78 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.10 Total: 11.88 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 6.24 Total: 25.51 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -5.97 Total: -96.15 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.24 Total: -24.85 kcal Atomic # 9 Polarization: -20.28 SS G_CDS: 1.97 Total: -18.31 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -62.91 5.13 -57.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133318080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.964 kcal (2) G-P(sol) polarization free energy of solvation -62.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds