Wall clock time and date at job start Tue Mar 31 2020 19:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35914 * 116.99908 * 2 1 4 4 C 1.38848 * 119.98992 * 0.02815 * 3 2 1 5 5 C 1.38235 * 120.24224 * 179.97438 * 4 3 2 6 6 C 1.38008 * 120.20810 * 359.70284 * 5 4 3 7 7 N 1.48020 * 120.02230 * 180.27701 * 6 5 4 8 8 O 1.21805 * 119.99858 * 6.19498 * 7 6 5 9 9 O 1.21800 * 120.00294 * 186.19681 * 7 6 5 10 10 C 1.39561 * 119.96161 * 0.54976 * 6 5 4 11 11 C 1.47856 * 120.12043 * 179.74873 * 10 6 5 12 12 O 1.21555 * 120.00057 * 57.08889 * 11 10 6 13 13 N 1.34774 * 120.00180 * 237.09603 * 11 10 6 14 14 C 1.46964 * 120.59534 * 185.06907 * 13 11 10 15 15 C 1.53370 * 108.63956 * 235.20587 * 14 13 11 16 16 N 1.46971 * 108.63345 * 310.57767 * 15 14 13 17 17 C 1.36938 * 120.59198 * 235.19969 * 16 15 14 18 18 H 1.07999 * 119.99995 * 31.28392 * 17 16 15 19 19 C 1.38811 * 119.99818 * 211.54598 * 17 16 15 20 20 N 1.31617 * 120.00109 * 9.57590 * 19 17 16 21 21 Si 1.86805 * 119.99962 * 189.56879 * 19 17 16 22 22 H 1.48503 * 109.46897 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46972 * 120.00360 * 21 19 17 24 24 H 1.48497 * 109.46954 * 240.00378 * 21 19 17 25 25 C 1.46963 * 118.81095 * 55.47608 * 16 15 14 26 26 C 1.46968 * 120.59659 * 5.05488 * 13 11 10 27 27 C 1.38457 * 119.97935 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47566 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46527 * 299.99613 * 1 2 3 30 30 H 1.09003 * 109.47473 * 59.98972 * 1 2 3 31 31 H 1.08001 * 119.87681 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.89788 * 180.02562 * 5 4 3 33 33 H 1.09009 * 109.60973 * 115.46448 * 14 13 11 34 34 H 1.08994 * 109.61460 * 354.95317 * 14 13 11 35 35 H 1.09006 * 109.61228 * 190.83716 * 15 14 13 36 36 H 1.08994 * 109.61025 * 70.31715 * 15 14 13 37 37 H 0.96997 * 120.00318 * 179.97438 * 20 19 17 38 38 H 1.09000 * 109.60920 * 64.26605 * 25 16 15 39 39 H 1.08999 * 109.60877 * 184.77609 * 25 16 15 40 40 H 1.09004 * 109.60944 * 244.54388 * 26 13 11 41 41 H 1.09004 * 109.60361 * 5.04331 * 26 13 11 42 42 H 1.07995 * 120.10718 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2896 2.3753 0.0006 5 6 1.9117 3.6098 0.0011 6 6 3.2892 3.6931 0.0073 7 7 3.9511 5.0171 0.0140 8 8 3.2849 6.0304 0.1280 9 8 5.1618 5.0933 -0.0944 10 6 4.0580 2.5283 0.0014 11 6 5.5341 2.6136 0.0023 12 8 6.1076 3.2149 0.8894 13 7 6.2437 2.0246 -0.9805 14 6 7.7125 2.0055 -0.9343 15 6 8.2518 2.6180 -2.2329 16 7 7.5707 1.9829 -3.3699 17 6 8.2918 1.3846 -4.3685 18 1 9.2424 0.9228 -4.1459 19 6 7.8034 1.3763 -5.6678 20 7 6.7489 2.0997 -5.9792 21 14 8.6431 0.3387 -6.9747 22 1 9.7974 -0.3761 -6.3729 23 1 7.6774 -0.6502 -7.5175 24 1 9.1218 1.2171 -8.0721 25 6 6.1021 2.0070 -3.4190 26 6 5.5627 1.3897 -2.1176 27 6 3.4287 1.2830 -0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 0.2112 2.3163 0.0006 32 1 1.3179 4.5119 0.0020 33 1 8.0623 0.9772 -0.8420 34 1 8.0594 2.5903 -0.0824 35 1 9.3249 2.4398 -2.3034 36 1 8.0551 3.6900 -2.2410 37 1 6.4078 2.0943 -6.8872 38 1 5.7559 3.0366 -3.5096 39 1 5.7551 1.4253 -4.2729 40 1 5.7593 0.3175 -2.1095 41 1 4.4896 1.5678 -2.0470 42 1 4.0183 0.3782 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152708787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:37 Heat of formation + Delta-G solvation = -1.311981 kcal Electronic energy + Delta-G solvation = -29983.812163 eV Core-core repulsion = 25741.468443 eV Total energy + Delta-G solvation = -4242.343720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.09311 -40.78330 -39.66253 -37.75003 -36.80967 -36.18770 -33.96974 -32.34173 -31.55357 -31.04232 -30.12618 -28.31879 -27.04022 -25.96364 -24.52681 -23.35344 -23.02957 -22.29322 -20.87862 -19.59448 -18.92351 -18.49393 -18.14213 -17.36883 -17.06697 -16.74516 -16.37373 -16.06188 -15.73130 -15.00834 -14.82966 -14.73835 -14.19741 -13.89981 -13.70981 -13.61031 -13.34626 -13.30549 -13.23899 -12.80501 -12.42202 -11.84625 -11.73489 -11.66888 -11.31605 -11.27171 -10.91267 -10.88792 -10.80503 -10.74608 -10.49575 -10.23813 -10.11878 -9.92590 -9.80275 -9.48720 -9.13935 -8.62522 -8.31808 -6.68750 -5.86654 -3.36751 -0.21346 0.42114 1.36737 1.51083 2.45464 2.70768 2.93139 3.31529 3.33142 3.39905 3.41723 3.98010 4.10801 4.28455 4.41822 4.50141 4.59320 4.61825 4.63328 4.95383 5.11517 5.19173 5.26333 5.32474 5.37673 5.49188 5.68438 5.73553 5.82966 5.92599 6.05130 6.17156 6.32294 6.40907 6.49246 6.62719 6.80567 6.93137 7.17898 7.46563 7.68641 7.75089 7.86344 8.34297 8.36902 9.11363 9.71906 10.30358 11.20556 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.003970 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.364209 B = 7051.479949 C = 8155.931214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.301 6.301 3 C 0.177 3.823 4 C -0.200 4.200 5 C -0.015 4.015 6 C -0.050 4.050 7 N 0.027 4.973 8 O -0.182 6.182 9 O -0.113 6.113 10 C -0.007 4.007 11 C 0.550 3.450 12 O -0.515 6.515 13 N -0.581 5.581 14 C 0.099 3.901 15 C 0.130 3.870 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.906 5.906 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.159 3.841 26 C 0.075 3.925 27 C -0.123 4.123 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.255 0.745 38 H 0.022 0.978 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.288 -4.593 12.116 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.213 6.213 3 C 0.130 3.870 4 C -0.219 4.219 5 C -0.034 4.034 6 C -0.135 4.135 7 N 0.548 4.452 8 O -0.390 6.390 9 O -0.338 6.338 10 C -0.012 4.012 11 C 0.335 3.665 12 O -0.392 6.392 13 N -0.313 5.313 14 C -0.025 4.025 15 C 0.003 3.997 16 N -0.314 5.314 17 C -0.382 4.382 18 H 0.086 0.914 19 C -0.194 4.194 20 N -0.551 5.551 21 Si 0.737 3.263 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.032 3.968 26 C -0.049 4.049 27 C -0.142 4.142 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.124 0.876 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.325 -5.078 12.398 20.355 hybrid contribution 0.049 -0.032 -0.886 0.887 sum -15.276 -5.110 11.513 19.799 Atomic orbital electron populations 1.23272 0.77128 1.05030 1.02013 1.86174 1.22430 1.25653 1.87024 1.19116 0.91971 0.84927 0.90976 1.21321 1.01288 0.90631 1.08701 1.20736 0.91165 0.99715 0.91763 1.20936 0.92959 0.82836 1.16735 1.43365 1.01403 1.02199 0.98209 1.94481 1.65052 1.24914 1.54568 1.94714 0.95204 1.93212 1.50679 1.19756 0.95777 0.91156 0.94462 1.17765 0.85054 0.80160 0.83511 1.90817 1.69978 1.40993 1.37412 1.47926 1.07722 1.54388 1.21255 1.22288 0.77785 1.01422 1.00986 1.21339 0.96446 0.95317 0.86612 1.43980 1.00942 1.64130 1.22350 1.19277 1.03921 1.28580 0.86470 0.91371 1.25198 0.98478 0.98638 0.97120 1.69936 1.25397 1.40972 1.18786 0.86151 0.78950 0.79569 0.81678 1.20146 1.21569 1.21564 1.21303 0.84090 0.98422 0.92946 1.22940 0.95539 0.97806 0.88646 1.20517 0.91819 0.97221 1.04691 0.87343 0.91961 0.91756 0.82865 0.82204 0.91584 0.89485 0.91318 0.95235 0.93489 0.95950 0.87633 0.91270 0.91698 0.82273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.08 16 2 O -0.30 -2.53 10.49 -19.47 -0.20 -2.73 16 3 C 0.18 1.73 6.68 -39.28 -0.26 1.47 16 4 C -0.20 -1.66 9.03 -39.36 -0.36 -2.01 16 5 C -0.01 -0.16 9.54 -39.67 -0.38 -0.54 16 6 C -0.05 -0.76 6.86 -79.54 -0.55 -1.31 16 7 N 0.03 0.50 4.45 34.16 0.15 0.65 16 8 O -0.18 -3.20 18.46 -29.46 -0.54 -3.74 16 9 O -0.11 -2.39 15.05 -37.03 -0.56 -2.95 16 10 C -0.01 -0.10 4.50 -104.99 -0.47 -0.58 16 11 C 0.55 10.15 5.66 -12.33 -0.07 10.08 16 12 O -0.52 -10.87 14.31 -18.59 -0.27 -11.14 16 13 N -0.58 -10.71 2.95 -173.32 -0.51 -11.23 16 14 C 0.10 1.81 6.60 -3.60 -0.02 1.79 16 15 C 0.13 2.75 6.67 -3.59 -0.02 2.73 16 16 N -0.59 -14.43 2.96 -171.77 -0.51 -14.94 16 17 C -0.25 -6.67 9.59 -15.06 -0.14 -6.82 16 18 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 19 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 20 N -0.91 -25.45 10.94 55.49 0.61 -24.85 16 21 Si 0.91 20.97 29.57 -169.99 -5.03 15.94 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.16 3.66 5.49 -3.37 -0.02 3.65 16 26 C 0.07 1.35 5.97 -3.37 -0.02 1.33 16 27 C -0.12 -1.48 7.83 -39.02 -0.31 -1.79 16 28 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.17 7.66 -51.93 -0.40 -0.22 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.15 0.70 6.28 -52.49 -0.33 0.37 16 32 H 0.16 1.39 7.61 -52.49 -0.40 0.99 16 33 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 34 H 0.09 1.57 6.99 -51.93 -0.36 1.21 16 35 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.11 2.66 5.96 -51.93 -0.31 2.35 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.04 5.40 -51.93 -0.28 0.76 16 42 H 0.16 1.76 7.95 -52.49 -0.42 1.34 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -33.64 350.13 -8.27 -41.91 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.97 Total: -1.31 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -1.72 Total: 9.10 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.26 Total: -50.36 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -1.57 Total: -20.56 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.64 -8.27 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152708787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.593 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds