Wall clock time and date at job start Tue Mar 31 2020 19:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35914 * 116.99908 * 2 1 4 4 C 1.38848 * 119.98992 * 0.02815 * 3 2 1 5 5 C 1.38235 * 120.24224 * 179.97438 * 4 3 2 6 6 C 1.38008 * 120.20810 * 359.70284 * 5 4 3 7 7 N 1.48020 * 120.02230 * 180.27701 * 6 5 4 8 8 O 1.21805 * 119.99858 * 6.19498 * 7 6 5 9 9 O 1.21800 * 120.00294 * 186.19681 * 7 6 5 10 10 C 1.39561 * 119.96161 * 0.54976 * 6 5 4 11 11 C 1.47856 * 120.12043 * 179.74873 * 10 6 5 12 12 O 1.21555 * 120.00057 * 57.08889 * 11 10 6 13 13 N 1.34774 * 120.00180 * 237.09603 * 11 10 6 14 14 C 1.46964 * 120.59534 * 185.06907 * 13 11 10 15 15 C 1.53370 * 108.63956 * 235.20587 * 14 13 11 16 16 N 1.46971 * 108.63345 * 310.57767 * 15 14 13 17 17 C 1.36938 * 120.59198 * 235.19969 * 16 15 14 18 18 H 1.07999 * 119.99995 * 31.28392 * 17 16 15 19 19 C 1.38811 * 119.99818 * 211.54598 * 17 16 15 20 20 N 1.31617 * 120.00109 * 9.57590 * 19 17 16 21 21 Si 1.86805 * 119.99962 * 189.56879 * 19 17 16 22 22 H 1.48503 * 109.46897 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46972 * 120.00360 * 21 19 17 24 24 H 1.48497 * 109.46954 * 240.00378 * 21 19 17 25 25 C 1.46963 * 118.81095 * 55.47608 * 16 15 14 26 26 C 1.46968 * 120.59659 * 5.05488 * 13 11 10 27 27 C 1.38457 * 119.97935 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47566 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46527 * 299.99613 * 1 2 3 30 30 H 1.09003 * 109.47473 * 59.98972 * 1 2 3 31 31 H 1.08001 * 119.87681 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.89788 * 180.02562 * 5 4 3 33 33 H 1.09009 * 109.60973 * 115.46448 * 14 13 11 34 34 H 1.08994 * 109.61460 * 354.95317 * 14 13 11 35 35 H 1.09006 * 109.61228 * 190.83716 * 15 14 13 36 36 H 1.08994 * 109.61025 * 70.31715 * 15 14 13 37 37 H 0.96997 * 120.00318 * 179.97438 * 20 19 17 38 38 H 1.09000 * 109.60920 * 64.26605 * 25 16 15 39 39 H 1.08999 * 109.60877 * 184.77609 * 25 16 15 40 40 H 1.09004 * 109.60944 * 244.54388 * 26 13 11 41 41 H 1.09004 * 109.60361 * 5.04331 * 26 13 11 42 42 H 1.07995 * 120.10718 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2896 2.3753 0.0006 5 6 1.9117 3.6098 0.0011 6 6 3.2892 3.6931 0.0073 7 7 3.9511 5.0171 0.0140 8 8 3.2849 6.0304 0.1280 9 8 5.1618 5.0933 -0.0944 10 6 4.0580 2.5283 0.0014 11 6 5.5341 2.6136 0.0023 12 8 6.1076 3.2149 0.8894 13 7 6.2437 2.0246 -0.9805 14 6 7.7125 2.0055 -0.9343 15 6 8.2518 2.6180 -2.2329 16 7 7.5707 1.9829 -3.3699 17 6 8.2918 1.3846 -4.3685 18 1 9.2424 0.9228 -4.1459 19 6 7.8034 1.3763 -5.6678 20 7 6.7489 2.0997 -5.9792 21 14 8.6431 0.3387 -6.9747 22 1 9.7974 -0.3761 -6.3729 23 1 7.6774 -0.6502 -7.5175 24 1 9.1218 1.2171 -8.0721 25 6 6.1021 2.0070 -3.4190 26 6 5.5627 1.3897 -2.1176 27 6 3.4287 1.2830 -0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 0.2112 2.3163 0.0006 32 1 1.3179 4.5119 0.0020 33 1 8.0623 0.9772 -0.8420 34 1 8.0594 2.5903 -0.0824 35 1 9.3249 2.4398 -2.3034 36 1 8.0551 3.6900 -2.2410 37 1 6.4078 2.0943 -6.8872 38 1 5.7559 3.0366 -3.5096 39 1 5.7551 1.4253 -4.2729 40 1 5.7593 0.3175 -2.1095 41 1 4.4896 1.5678 -2.0470 42 1 4.0183 0.3782 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152708787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:36 Heat of formation + Delta-G solvation = -22.499326 kcal Electronic energy + Delta-G solvation = -29984.730916 eV Core-core repulsion = 25741.468443 eV Total energy + Delta-G solvation = -4243.262473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.34775 -41.78847 -40.86731 -38.80809 -38.31050 -37.57194 -35.71161 -33.67424 -32.69353 -32.42173 -31.76937 -29.16053 -28.52383 -27.01486 -25.97063 -24.82040 -24.50739 -23.50400 -22.31471 -20.98734 -20.11484 -19.66573 -19.48889 -18.62609 -18.43567 -17.89753 -17.44706 -17.17121 -16.89517 -16.67096 -16.20719 -15.77077 -15.49363 -15.36007 -15.14431 -14.99528 -14.87317 -14.56770 -14.20987 -13.90453 -13.44875 -13.37301 -13.15879 -12.75862 -12.68552 -12.50831 -12.38808 -12.33059 -12.27745 -12.24511 -12.16903 -12.05782 -11.98475 -11.70279 -11.19383 -10.66196 -10.54016 -9.95039 -9.91170 -8.65684 -7.89130 -5.44122 -1.36899 -0.45482 0.20138 0.36040 1.34404 1.48252 1.50404 1.60694 1.68900 1.96280 2.19270 2.49959 3.01917 3.16367 3.27191 3.40406 3.54386 3.63082 3.73179 4.12941 4.16116 4.19375 4.30683 4.32758 4.39563 4.43225 4.48264 4.52561 4.57951 4.69422 4.71525 4.77751 4.83663 4.90046 5.03520 5.19100 5.22651 5.44316 5.57293 5.61992 5.98727 6.25952 6.36052 6.45865 6.92122 7.09462 7.74481 8.30633 9.16130 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.003970 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.364209 B = 7051.479949 C = 8155.931214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.308 6.308 3 C 0.195 3.805 4 C -0.175 4.175 5 C -0.004 4.004 6 C -0.080 4.080 7 N 0.031 4.969 8 O -0.149 6.149 9 O -0.211 6.211 10 C -0.032 4.032 11 C 0.551 3.449 12 O -0.550 6.550 13 N -0.588 5.588 14 C 0.108 3.892 15 C 0.131 3.869 16 N -0.607 5.607 17 C -0.264 4.264 18 H 0.074 0.926 19 C -0.046 4.046 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.296 1.296 25 C 0.167 3.833 26 C 0.095 3.905 27 C -0.125 4.125 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.204 0.796 32 H 0.186 0.814 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.002 0.998 37 H 0.252 0.748 38 H -0.016 1.016 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.662 -6.985 12.799 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.219 6.219 3 C 0.147 3.853 4 C -0.193 4.193 5 C -0.023 4.023 6 C -0.164 4.164 7 N 0.544 4.456 8 O -0.371 6.371 9 O -0.414 6.414 10 C -0.037 4.037 11 C 0.338 3.662 12 O -0.428 6.428 13 N -0.320 5.320 14 C -0.015 4.015 15 C 0.004 3.996 16 N -0.331 5.331 17 C -0.393 4.393 18 H 0.091 0.909 19 C -0.241 4.241 20 N -0.585 5.585 21 Si 0.802 3.198 22 H -0.189 1.189 23 H -0.212 1.212 24 H -0.223 1.223 25 C 0.040 3.960 26 C -0.029 4.029 27 C -0.144 4.144 28 H 0.143 0.857 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.221 0.779 32 H 0.203 0.797 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.020 0.980 37 H 0.061 0.939 38 H 0.002 0.998 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.530 -7.540 13.088 23.906 hybrid contribution 0.768 0.685 -1.039 1.462 sum -17.762 -6.855 12.049 22.531 Atomic orbital electron populations 1.23729 0.74435 1.06974 1.03820 1.86200 1.25099 1.24683 1.85954 1.19134 0.91192 0.86228 0.88781 1.21821 1.03430 0.88655 1.05432 1.21157 0.89065 1.01930 0.90117 1.21199 0.94476 0.80555 1.20214 1.43845 1.01127 1.03512 0.97139 1.94397 1.64484 1.26408 1.51767 1.94734 0.96724 1.93945 1.55975 1.19508 0.93653 0.92749 0.97755 1.18240 0.86707 0.78674 0.82617 1.90775 1.71335 1.41977 1.38738 1.47968 1.07670 1.54797 1.21536 1.22114 0.78285 1.02143 0.98967 1.21380 0.97134 0.93784 0.87269 1.44239 1.01578 1.64424 1.22810 1.19625 1.04231 1.28324 0.87159 0.90858 1.25959 0.99198 0.99913 0.99051 1.70116 1.26872 1.42603 1.18924 0.85105 0.78225 0.77824 0.78651 1.18860 1.21213 1.22314 1.21083 0.83748 0.96186 0.94969 1.22667 0.96487 0.97975 0.85761 1.20581 0.93411 0.95967 1.04477 0.85671 0.89814 0.90115 0.77915 0.79684 0.89604 0.89503 0.90250 0.98042 0.93873 0.99794 0.89745 0.89509 0.89420 0.81564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 -3.67 10.49 -92.58 -0.97 -4.65 16 3 C 0.20 2.98 6.68 22.47 0.15 3.13 16 4 C -0.17 -1.96 9.03 22.42 0.20 -1.76 16 5 C 0.00 -0.07 9.54 22.21 0.21 0.14 16 6 C -0.08 -2.36 6.86 36.64 0.25 -2.11 16 7 N 0.03 1.16 4.45 -45.83 -0.20 0.96 16 8 O -0.15 -5.19 18.46 18.88 0.35 -4.84 16 9 O -0.21 -9.72 15.05 26.12 0.39 -9.33 16 10 C -0.03 -0.98 4.50 -20.10 -0.09 -1.07 16 11 C 0.55 21.13 5.66 86.79 0.49 21.62 16 12 O -0.55 -24.64 14.31 18.97 0.27 -24.37 16 13 N -0.59 -22.33 2.95 -820.54 -2.42 -24.75 16 14 C 0.11 4.11 6.60 86.42 0.57 4.68 16 15 C 0.13 5.81 6.67 86.41 0.58 6.39 16 16 N -0.61 -30.67 2.96 -697.35 -2.06 -32.73 16 17 C -0.26 -14.13 9.59 84.03 0.81 -13.32 16 18 H 0.07 3.78 7.85 -2.91 -0.02 3.76 16 19 C -0.05 -2.49 5.08 84.86 0.43 -2.06 16 20 N -0.94 -54.35 10.94 21.65 0.24 -54.11 16 21 Si 0.97 43.44 29.57 68.60 2.03 45.47 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 25 C 0.17 8.01 5.49 86.56 0.48 8.48 16 26 C 0.09 3.45 5.97 86.56 0.52 3.96 16 27 C -0.12 -2.73 7.83 22.63 0.18 -2.56 16 28 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.08 -0.08 7.66 -2.38 -0.02 -0.10 16 30 H 0.08 0.01 7.66 -2.39 -0.02 -0.01 16 31 H 0.20 0.29 6.28 -2.91 -0.02 0.28 16 32 H 0.19 2.38 7.61 -2.91 -0.02 2.35 16 33 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 34 H 0.09 3.30 6.99 -2.39 -0.02 3.28 16 35 H 0.08 3.28 7.93 -2.38 -0.02 3.26 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 38 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H 0.08 4.41 5.96 -2.39 -0.01 4.40 16 40 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 41 H 0.09 2.78 5.40 -2.38 -0.01 2.77 16 42 H 0.17 3.32 7.95 -2.91 -0.02 3.30 16 Total: -1.00 -79.80 350.13 4.57 -75.23 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.07 Total: 6.46 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: 5.88 Total: 26.66 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.45 Total: -110.63 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: 0.04 Total: -43.19 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -79.80 4.57 -75.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152708787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.735 kcal (2) G-P(sol) polarization free energy of solvation -79.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds