Wall clock time and date at job start Tue Mar 31 2020 18:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34425 * 124.34592 * 2 1 4 4 O 1.21281 * 124.94631 * 0.43075 * 3 2 1 5 5 C 1.51288 * 110.11357 * 180.40770 * 3 2 1 6 6 C 1.54631 * 104.19528 * 16.25490 * 5 3 2 7 7 H 1.09004 * 110.96692 * 217.08741 * 6 5 3 8 8 C 1.50696 * 110.96974 * 93.35496 * 6 5 3 9 9 O 1.20828 * 120.00320 * 241.45000 * 8 6 5 10 10 O 1.34226 * 119.99865 * 61.45861 * 8 6 5 11 11 C 1.45206 * 117.00051 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.47019 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.46801 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99983 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99878 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00411 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47172 * 59.99518 * 17 15 13 19 19 H 1.48498 * 109.47273 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46572 * 300.00189 * 17 15 13 21 21 C 1.46765 * 124.35294 * 179.70280 * 2 1 3 22 22 H 1.08992 * 110.24467 * 43.98011 * 21 2 1 23 23 C 1.50702 * 110.24526 * 281.98256 * 21 2 1 24 24 C 1.38246 * 119.97421 * 321.18445 * 23 21 2 25 25 C 1.38199 * 120.02624 * 179.72820 * 24 23 21 26 26 C 1.38457 * 119.97132 * 0.56142 * 25 24 23 27 27 F 1.35098 * 120.02580 * 179.68545 * 26 25 24 28 28 C 1.38465 * 119.94939 * 359.70722 * 26 25 24 29 29 C 1.38195 * 119.97288 * 359.97438 * 28 26 25 30 30 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46813 * 240.02361 * 1 2 3 32 32 H 1.09004 * 109.47041 * 120.02488 * 1 2 3 33 33 H 1.08996 * 110.48510 * 134.93241 * 5 3 2 34 34 H 1.09000 * 110.48740 * 257.57294 * 5 3 2 35 35 H 1.08997 * 109.46635 * 299.99619 * 11 10 8 36 36 H 1.08999 * 109.46810 * 59.99528 * 11 10 8 37 37 H 1.08997 * 109.47231 * 299.99999 * 12 11 10 38 38 H 1.09000 * 109.46738 * 60.00103 * 12 11 10 39 39 H 0.97003 * 120.00232 * 179.97438 * 16 15 13 40 40 H 1.08002 * 119.98478 * 359.96971 * 24 23 21 41 41 H 1.07999 * 120.01624 * 180.24757 * 25 24 23 42 42 H 1.08004 * 120.00950 * 179.97438 * 28 26 25 43 43 H 1.08002 * 119.98364 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1099 0.0000 4 8 1.7946 2.2443 0.0075 5 6 3.6898 0.7379 -0.0101 6 6 3.7011 -0.7486 -0.4358 7 1 4.4754 -1.3009 0.0966 8 6 3.8759 -0.8813 -1.9266 9 8 3.0154 -1.4082 -2.5914 10 8 4.9877 -0.4145 -2.5162 11 6 5.0887 -0.5771 -3.9556 12 6 6.4139 0.0118 -4.4436 13 6 6.5189 -0.1576 -5.9373 14 1 5.7202 -0.6369 -6.4840 15 6 7.6346 0.2994 -6.6062 16 7 8.6069 0.8835 -5.9406 17 14 7.7645 0.0901 -8.4579 18 1 6.6368 0.7972 -9.1164 19 1 9.0507 0.6616 -8.9316 20 1 7.7089 -1.3544 -8.7978 21 6 2.2932 -1.2116 0.0063 22 1 1.8985 -1.9419 -0.7000 23 6 2.3451 -1.8006 1.3925 24 6 2.4257 -0.9689 2.4938 25 6 2.4678 -1.5077 3.7657 26 6 2.4408 -2.8814 3.9362 27 9 2.4882 -3.4095 5.1788 28 6 2.3656 -3.7137 2.8321 29 6 2.3170 -3.1724 1.5615 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5135 0.8902 32 1 -0.3633 -0.5142 -0.8898 33 1 4.2326 1.3461 -0.7337 34 1 4.1195 0.8531 0.9850 35 1 5.0481 -1.6374 -4.2050 36 1 4.2609 -0.0581 -4.4387 37 1 6.4541 1.0721 -4.1941 38 1 7.2418 -0.5069 -3.9604 39 1 9.3921 1.2047 -6.4111 40 1 2.4520 0.1025 2.3602 41 1 2.5267 -0.8576 4.6261 42 1 2.3449 -4.7854 2.9640 43 1 2.2588 -3.8214 0.7002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179151724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:29 Heat of formation + Delta-G solvation = -141.367627 kcal Electronic energy + Delta-G solvation = -28386.100112 eV Core-core repulsion = 24117.763162 eV Total energy + Delta-G solvation = -4268.336951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.28571 -41.63350 -39.78536 -39.08882 -36.83210 -36.04497 -33.52947 -33.20603 -31.70603 -31.30964 -30.31777 -27.68462 -27.06065 -25.27819 -23.93343 -23.49013 -21.99498 -21.10177 -20.45289 -19.69773 -18.32033 -17.79893 -17.22403 -16.87075 -16.59073 -16.18171 -16.05487 -15.98318 -15.58771 -15.52001 -15.22764 -14.54811 -14.28414 -14.04744 -13.97279 -13.72421 -13.61881 -13.47360 -13.07533 -12.74793 -12.60664 -12.55361 -12.37740 -12.32176 -11.91926 -11.77378 -11.43564 -11.30342 -11.11671 -10.80229 -10.75538 -10.36004 -10.06703 -9.74674 -9.70227 -9.57384 -9.36921 -9.16284 -8.99037 -8.48009 -6.14132 -4.19000 0.59628 0.77141 2.29069 2.32961 2.62136 2.81833 3.14970 3.27617 3.32052 3.35022 3.81868 3.95946 3.99407 4.17768 4.29483 4.35869 4.41818 4.47133 4.78396 4.78877 4.93107 5.06352 5.10043 5.15510 5.22525 5.29220 5.36085 5.45172 5.49697 5.51127 5.59604 5.67038 5.76751 5.91521 5.97591 5.99840 6.24084 6.40090 6.54926 6.77697 6.82484 7.48731 7.56099 7.79969 7.89670 8.01175 8.18609 8.86145 9.45720 10.97245 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.002400 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.531793 B =11664.784683 C =12337.380947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.612 5.612 3 C 0.517 3.483 4 O -0.523 6.523 5 C -0.149 4.149 6 C -0.091 4.091 7 H 0.138 0.862 8 C 0.465 3.535 9 O -0.509 6.509 10 O -0.350 6.350 11 C 0.075 3.925 12 C 0.025 3.975 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.186 3.814 22 H 0.120 0.880 23 C -0.110 4.110 24 C -0.071 4.071 25 C -0.152 4.152 26 C 0.102 3.898 27 F -0.140 7.140 28 C -0.151 4.151 29 C -0.072 4.072 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.264 0.736 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.870 -7.549 20.724 26.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.346 5.346 3 C 0.305 3.695 4 O -0.399 6.399 5 C -0.189 4.189 6 C -0.110 4.110 7 H 0.156 0.844 8 C 0.307 3.693 9 O -0.398 6.398 10 O -0.266 6.266 11 C 0.003 3.997 12 C -0.012 4.012 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.081 3.919 22 H 0.138 0.862 23 C -0.112 4.112 24 C -0.089 4.089 25 C -0.170 4.170 26 C 0.083 3.917 27 F -0.118 7.118 28 C -0.170 4.170 29 C -0.090 4.090 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.245 -6.997 20.487 25.915 hybrid contribution 0.109 -0.374 -0.846 0.932 sum -14.136 -7.371 19.640 25.296 Atomic orbital electron populations 1.21589 0.77425 1.03870 1.01804 1.48109 1.06730 1.06327 1.73451 1.20874 0.89153 0.84452 0.75067 1.90749 1.78449 1.20748 1.49922 1.22461 0.95457 0.94767 1.06236 1.21964 0.98698 0.99005 0.91376 0.84395 1.22883 0.80583 0.75442 0.90389 1.90639 1.42567 1.40929 1.65689 1.86510 1.39310 1.72673 1.28098 1.23730 1.02458 1.01267 0.72227 1.19173 0.89090 0.97179 0.95765 1.20918 1.04354 1.39915 0.91484 0.92317 1.24976 0.95476 0.94790 0.98827 1.69958 1.07931 1.38785 1.36083 0.86529 0.77439 0.78575 0.84749 1.20047 1.21085 1.20048 1.20394 0.89557 0.88238 0.93661 0.86246 1.20043 1.02610 0.93776 0.94752 1.20861 0.96880 1.00255 0.90941 1.21152 1.03761 0.93323 0.98811 1.17788 1.02251 0.91983 0.79689 1.91514 1.93724 1.86977 1.39593 1.21159 1.03698 1.00602 0.91567 1.20914 0.97029 0.94077 0.96996 0.89706 0.91982 0.91601 0.85924 0.86142 0.92086 0.92194 0.95275 0.95270 0.92587 0.85251 0.84517 0.84356 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.14 59.85 0.67 1.49 16 2 N -0.61 -6.45 2.50 -173.91 -0.43 -6.88 16 3 C 0.52 6.56 6.91 -10.85 -0.08 6.49 16 4 O -0.52 -8.54 17.35 5.56 0.10 -8.45 16 5 C -0.15 -1.56 5.81 -26.74 -0.16 -1.71 16 6 C -0.09 -0.94 3.16 -90.04 -0.28 -1.23 16 7 H 0.14 1.09 7.89 -51.93 -0.41 0.68 16 8 C 0.46 7.10 7.25 36.00 0.26 7.36 16 9 O -0.51 -8.85 15.29 -18.75 -0.29 -9.14 16 10 O -0.35 -6.37 10.00 -39.25 -0.39 -6.77 16 11 C 0.08 1.59 5.41 37.16 0.20 1.79 16 12 C 0.03 0.63 5.35 -27.88 -0.15 0.48 16 13 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 17 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.19 1.71 2.74 -68.06 -0.19 1.53 16 22 H 0.12 1.16 6.87 -51.93 -0.36 0.81 16 23 C -0.11 -0.84 4.90 -104.62 -0.51 -1.35 16 24 C -0.07 -0.53 9.02 -39.59 -0.36 -0.89 16 25 C -0.15 -1.11 10.03 -39.51 -0.40 -1.51 16 26 C 0.10 0.81 7.30 -39.42 -0.29 0.53 16 27 F -0.14 -1.26 17.27 2.25 0.04 -1.22 16 28 C -0.15 -1.04 10.03 -39.51 -0.40 -1.43 16 29 C -0.07 -0.48 9.68 -39.60 -0.38 -0.86 16 30 H 0.08 0.81 7.53 -51.93 -0.39 0.41 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.12 1.45 7.73 -51.93 -0.40 1.05 16 34 H 0.12 0.89 7.82 -51.93 -0.41 0.49 16 35 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 36 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.13 0.97 6.14 -52.49 -0.32 0.65 16 41 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.14 0.72 8.05 -52.49 -0.42 0.29 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -33.20 372.87 -7.74 -40.94 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.63 Total: -2.43 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.47 Total: -2.55 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.30 Total: -32.10 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.58 Total: -24.35 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.20 -7.74 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179151724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.426 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds