Wall clock time and date at job start Tue Mar 31 2020 18:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34425 * 124.34592 * 2 1 4 4 O 1.21281 * 124.94631 * 0.43075 * 3 2 1 5 5 C 1.51288 * 110.11357 * 180.40770 * 3 2 1 6 6 C 1.54631 * 104.19528 * 16.25490 * 5 3 2 7 7 H 1.09004 * 110.96692 * 217.08741 * 6 5 3 8 8 C 1.50696 * 110.96974 * 93.35496 * 6 5 3 9 9 O 1.20828 * 120.00320 * 241.45000 * 8 6 5 10 10 O 1.34226 * 119.99865 * 61.45861 * 8 6 5 11 11 C 1.45206 * 117.00051 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.47019 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.46801 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99983 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99878 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00411 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47172 * 59.99518 * 17 15 13 19 19 H 1.48498 * 109.47273 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46572 * 300.00189 * 17 15 13 21 21 C 1.46765 * 124.35294 * 179.70280 * 2 1 3 22 22 H 1.08992 * 110.24467 * 43.98011 * 21 2 1 23 23 C 1.50702 * 110.24526 * 281.98256 * 21 2 1 24 24 C 1.38246 * 119.97421 * 321.18445 * 23 21 2 25 25 C 1.38199 * 120.02624 * 179.72820 * 24 23 21 26 26 C 1.38457 * 119.97132 * 0.56142 * 25 24 23 27 27 F 1.35098 * 120.02580 * 179.68545 * 26 25 24 28 28 C 1.38465 * 119.94939 * 359.70722 * 26 25 24 29 29 C 1.38195 * 119.97288 * 359.97438 * 28 26 25 30 30 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46813 * 240.02361 * 1 2 3 32 32 H 1.09004 * 109.47041 * 120.02488 * 1 2 3 33 33 H 1.08996 * 110.48510 * 134.93241 * 5 3 2 34 34 H 1.09000 * 110.48740 * 257.57294 * 5 3 2 35 35 H 1.08997 * 109.46635 * 299.99619 * 11 10 8 36 36 H 1.08999 * 109.46810 * 59.99528 * 11 10 8 37 37 H 1.08997 * 109.47231 * 299.99999 * 12 11 10 38 38 H 1.09000 * 109.46738 * 60.00103 * 12 11 10 39 39 H 0.97003 * 120.00232 * 179.97438 * 16 15 13 40 40 H 1.08002 * 119.98478 * 359.96971 * 24 23 21 41 41 H 1.07999 * 120.01624 * 180.24757 * 25 24 23 42 42 H 1.08004 * 120.00950 * 179.97438 * 28 26 25 43 43 H 1.08002 * 119.98364 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1099 0.0000 4 8 1.7946 2.2443 0.0075 5 6 3.6898 0.7379 -0.0101 6 6 3.7011 -0.7486 -0.4358 7 1 4.4754 -1.3009 0.0966 8 6 3.8759 -0.8813 -1.9266 9 8 3.0154 -1.4082 -2.5914 10 8 4.9877 -0.4145 -2.5162 11 6 5.0887 -0.5771 -3.9556 12 6 6.4139 0.0118 -4.4436 13 6 6.5189 -0.1576 -5.9373 14 1 5.7202 -0.6369 -6.4840 15 6 7.6346 0.2994 -6.6062 16 7 8.6069 0.8835 -5.9406 17 14 7.7645 0.0901 -8.4579 18 1 6.6368 0.7972 -9.1164 19 1 9.0507 0.6616 -8.9316 20 1 7.7089 -1.3544 -8.7978 21 6 2.2932 -1.2116 0.0063 22 1 1.8985 -1.9419 -0.7000 23 6 2.3451 -1.8006 1.3925 24 6 2.4257 -0.9689 2.4938 25 6 2.4678 -1.5077 3.7657 26 6 2.4408 -2.8814 3.9362 27 9 2.4882 -3.4095 5.1788 28 6 2.3656 -3.7137 2.8321 29 6 2.3170 -3.1724 1.5615 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5135 0.8902 32 1 -0.3633 -0.5142 -0.8898 33 1 4.2326 1.3461 -0.7337 34 1 4.1195 0.8531 0.9850 35 1 5.0481 -1.6374 -4.2050 36 1 4.2609 -0.0581 -4.4387 37 1 6.4541 1.0721 -4.1941 38 1 7.2418 -0.5069 -3.9604 39 1 9.3921 1.2047 -6.4111 40 1 2.4520 0.1025 2.3602 41 1 2.5267 -0.8576 4.6261 42 1 2.3449 -4.7854 2.9640 43 1 2.2588 -3.8214 0.7002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179151724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:28 Heat of formation + Delta-G solvation = -159.228468 kcal Electronic energy + Delta-G solvation = -28386.874616 eV Core-core repulsion = 24117.763162 eV Total energy + Delta-G solvation = -4269.111455 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.90599 -42.58104 -41.01752 -39.80243 -38.01998 -37.27005 -35.46101 -34.20067 -32.38887 -32.21731 -31.86056 -28.64813 -27.83481 -27.02551 -25.02496 -24.02690 -23.10409 -22.56615 -21.64215 -20.59214 -19.24894 -18.72546 -18.35627 -18.08631 -17.78902 -17.50551 -17.26040 -16.73846 -16.59289 -16.41989 -16.37661 -15.96659 -15.25745 -14.92643 -14.86046 -14.64106 -14.48177 -14.37695 -14.25102 -14.13669 -13.66476 -13.46841 -13.31541 -13.17521 -13.07996 -13.03311 -12.73327 -12.63270 -12.57012 -12.48049 -11.97797 -11.85342 -11.52631 -11.48507 -11.33688 -11.07062 -10.60266 -10.09627 -9.97667 -9.63545 -8.26677 -6.39692 0.00992 0.25352 1.05482 1.35172 1.40951 1.44581 1.51195 1.58333 1.88916 2.39550 2.51209 3.08007 3.10224 3.15171 3.25575 3.41417 3.55051 3.71578 3.81205 3.95969 4.15074 4.22832 4.23065 4.27962 4.31629 4.36392 4.50475 4.58393 4.61500 4.69696 4.73150 4.82497 4.92462 4.96408 5.14916 5.21579 5.24521 5.27396 5.47973 5.51160 5.54620 5.74363 5.85414 5.90719 6.06785 6.62863 6.74301 6.95315 7.30137 8.85554 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.002400 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.531793 B =11664.784683 C =12337.380947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.610 5.610 3 C 0.509 3.491 4 O -0.569 6.569 5 C -0.146 4.146 6 C -0.081 4.081 7 H 0.173 0.827 8 C 0.463 3.537 9 O -0.530 6.530 10 O -0.358 6.358 11 C 0.092 3.908 12 C 0.030 3.970 13 C -0.551 4.551 14 H 0.065 0.935 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.264 1.264 21 C 0.193 3.807 22 H 0.120 0.880 23 C -0.110 4.110 24 C -0.072 4.072 25 C -0.153 4.153 26 C 0.088 3.912 27 F -0.149 7.149 28 C -0.150 4.150 29 C -0.067 4.067 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.005 0.995 38 H 0.010 0.990 39 H 0.268 0.732 40 H 0.129 0.871 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.418 -9.160 21.111 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.343 5.343 3 C 0.298 3.702 4 O -0.448 6.448 5 C -0.185 4.185 6 C -0.100 4.100 7 H 0.190 0.810 8 C 0.307 3.693 9 O -0.419 6.419 10 O -0.274 6.274 11 C 0.019 3.981 12 C -0.007 4.007 13 C -0.589 4.589 14 H 0.083 0.917 15 C -0.192 4.192 16 N -0.565 5.565 17 Si 0.794 3.206 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.189 1.189 21 C 0.089 3.911 22 H 0.137 0.863 23 C -0.111 4.111 24 C -0.090 4.090 25 C -0.172 4.172 26 C 0.069 3.931 27 F -0.127 7.127 28 C -0.168 4.168 29 C -0.085 4.085 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.173 0.827 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.029 0.971 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.172 0.828 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.817 -8.651 20.892 27.035 hybrid contribution 0.219 0.091 -0.881 0.913 sum -14.598 -8.560 20.011 26.207 Atomic orbital electron populations 1.21720 0.76472 1.03593 1.03234 1.48258 1.07539 1.06285 1.72170 1.21232 0.90244 0.84218 0.74529 1.90722 1.79309 1.22495 1.52294 1.22507 0.94047 0.94228 1.07763 1.22114 1.00690 0.99562 0.87620 0.81002 1.23809 0.79138 0.74214 0.92182 1.90630 1.42874 1.41779 1.66651 1.86494 1.41176 1.73495 1.26260 1.23179 0.99796 1.00911 0.74242 1.18974 0.90803 0.95644 0.95251 1.21347 1.04745 1.40007 0.92765 0.91715 1.25933 0.95017 0.94238 1.04011 1.70081 1.08578 1.39670 1.38191 0.85421 0.77643 0.79054 0.78478 1.19270 1.20570 1.18879 1.20393 0.88356 0.87518 0.94812 0.86260 1.19837 1.03618 0.94172 0.93468 1.20851 0.96978 1.00224 0.90958 1.21267 1.03405 0.93363 0.99162 1.18027 1.02898 0.92477 0.79682 1.91494 1.93879 1.87113 1.40241 1.21359 1.02862 1.01435 0.91184 1.21082 0.96085 0.93788 0.97543 0.90877 0.89703 0.90953 0.87510 0.82663 0.91573 0.92633 0.97696 0.97127 0.92340 0.85321 0.83510 0.82761 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 11.14 127.77 1.42 2.90 16 2 N -0.61 -12.04 2.50 -822.70 -2.05 -14.10 16 3 C 0.51 12.65 6.91 87.90 0.61 13.26 16 4 O -0.57 -18.90 17.35 -3.03 -0.05 -18.96 16 5 C -0.15 -2.84 5.81 30.59 0.18 -2.67 16 6 C -0.08 -1.50 3.16 -10.42 -0.03 -1.54 16 7 H 0.17 2.10 7.89 -2.38 -0.02 2.08 16 8 C 0.46 13.63 7.25 71.23 0.52 14.14 16 9 O -0.53 -17.88 15.29 21.96 0.34 -17.54 16 10 O -0.36 -12.97 10.00 -51.38 -0.51 -13.48 16 11 C 0.09 3.91 5.41 71.98 0.39 4.29 16 12 C 0.03 1.58 5.35 29.85 0.16 1.74 16 13 C -0.55 -30.61 9.11 25.60 0.23 -30.38 16 14 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 17 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 C 0.19 3.12 2.74 44.76 0.12 3.24 16 22 H 0.12 2.03 6.87 -2.39 -0.02 2.01 16 23 C -0.11 -1.35 4.90 -19.86 -0.10 -1.45 16 24 C -0.07 -0.90 9.02 22.26 0.20 -0.70 16 25 C -0.15 -1.91 10.03 22.31 0.22 -1.69 16 26 C 0.09 1.22 7.30 22.38 0.16 1.38 16 27 F -0.15 -2.44 17.27 44.97 0.78 -1.67 16 28 C -0.15 -1.63 10.03 22.31 0.22 -1.41 16 29 C -0.07 -0.68 9.68 22.26 0.22 -0.46 16 30 H 0.07 1.38 7.53 -2.39 -0.02 1.36 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.11 2.51 7.73 -2.39 -0.02 2.49 16 34 H 0.16 1.92 7.82 -2.39 -0.02 1.90 16 35 H 0.07 2.73 8.13 -2.39 -0.02 2.71 16 36 H 0.06 2.39 8.13 -2.39 -0.02 2.37 16 37 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.13 1.65 6.14 -2.91 -0.02 1.63 16 41 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 43 H 0.16 1.04 8.05 -2.91 -0.02 1.02 16 Total: -1.00 -72.70 372.87 6.82 -65.88 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.03 Total: 7.77 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 4.99 Total: 1.55 kcal Atomic # 7 Polarization: -66.82 SS G_CDS: -1.77 Total: -68.59 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.23 Total: -49.98 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.67 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.70 6.82 -65.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179151724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.350 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds