Wall clock time and date at job start Tue Mar 31 2020 18:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35898 * 116.99920 * 2 1 4 4 C 1.38758 * 120.17737 * 0.02962 * 3 2 1 5 5 C 1.37829 * 119.71488 * 180.02562 * 4 3 2 6 6 C 1.38967 * 120.62344 * 359.97438 * 5 4 3 7 7 C 1.37712 * 119.76952 * 359.83448 * 6 5 4 8 8 C 1.38430 * 120.16895 * 179.97438 * 3 2 1 9 9 C 1.50638 * 122.56405 * 180.30997 * 7 6 5 10 10 C 1.52733 * 110.59770 * 342.46489 * 9 7 6 11 11 C 1.53329 * 108.36802 * 51.06644 * 10 9 7 12 12 C 1.50660 * 117.68163 * 179.77151 * 6 5 4 13 13 H 1.09001 * 109.21931 * 282.76385 * 12 6 5 14 14 C 1.52994 * 109.25144 * 42.21308 * 12 6 5 15 15 N 1.46504 * 109.47015 * 184.85942 * 14 12 6 16 16 C 1.34772 * 119.99934 * 185.26015 * 15 14 12 17 17 O 1.21277 * 120.00444 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99721 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47050 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99848 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00215 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99692 * 180.27496 * 20 19 18 23 23 N 1.31633 * 120.00158 * 359.72341 * 22 20 19 24 24 Si 1.86801 * 120.00002 * 179.72566 * 22 20 19 25 25 H 1.48501 * 109.47259 * 59.99522 * 24 22 20 26 26 H 1.48495 * 109.47280 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46806 * 299.99801 * 24 22 20 28 28 H 1.08999 * 109.46846 * 59.99712 * 1 2 3 29 29 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46865 * 299.99766 * 1 2 3 31 31 H 1.07997 * 120.14460 * 0.09559 * 4 3 2 32 32 H 1.07995 * 119.69308 * 179.97438 * 5 4 3 33 33 H 1.07995 * 119.75318 * 359.97438 * 8 3 2 34 34 H 1.09005 * 109.25190 * 222.17562 * 9 7 6 35 35 H 1.09000 * 109.22121 * 102.73014 * 9 7 6 36 36 H 1.09002 * 109.68107 * 291.34646 * 10 9 7 37 37 H 1.08996 * 109.71483 * 170.80541 * 10 9 7 38 38 H 1.08995 * 109.68135 * 170.33654 * 11 10 9 39 39 H 1.08999 * 109.68274 * 49.77355 * 11 10 9 40 40 H 1.09000 * 109.47191 * 64.86451 * 14 12 6 41 41 H 1.08994 * 109.47011 * 304.85804 * 14 12 6 42 42 H 0.97000 * 119.99364 * 5.26010 * 15 14 12 43 43 H 1.09000 * 109.47537 * 59.99797 * 18 16 15 44 44 H 1.09009 * 109.46846 * 299.99848 * 18 16 15 45 45 H 0.97006 * 119.99738 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2939 2.3769 0.0006 5 6 1.9295 3.5999 0.0001 6 6 3.3170 3.6765 -0.0005 7 6 4.0657 2.5207 0.0028 8 6 3.4282 1.2874 0.0005 9 6 5.5720 2.5304 0.0092 10 6 6.1024 3.8970 -0.4195 11 6 5.4059 4.9718 0.4236 12 6 3.9423 5.0473 -0.0064 13 1 3.8841 5.4639 -1.0120 14 6 3.1785 5.9542 0.9604 15 7 3.7081 7.3174 0.8728 16 6 3.2586 8.2703 1.7131 17 8 2.4159 7.9994 2.5422 18 6 3.8030 9.6726 1.6225 19 16 3.0083 10.7104 2.8746 20 6 3.8088 12.2465 2.5517 21 1 4.5463 12.3165 1.7659 22 6 3.4960 13.3652 3.3115 23 7 2.5975 13.2798 4.2696 24 14 4.3502 14.9919 2.9743 25 1 4.0726 15.4169 1.5788 26 1 3.8422 16.0221 3.9154 27 1 5.8146 14.8298 3.1603 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2151 2.3264 0.0027 32 1 1.3437 4.5072 0.0001 33 1 4.0151 0.3809 0.0014 34 1 5.9392 1.7699 -0.6800 35 1 5.9280 2.3060 1.0147 36 1 5.8853 4.0604 -1.4751 37 1 7.1789 3.9417 -0.2549 38 1 5.8869 5.9359 0.2594 39 1 5.4652 4.7061 1.4790 40 1 3.2980 5.5828 1.9782 41 1 2.1210 5.9577 0.6966 42 1 4.3824 7.5340 0.2099 43 1 3.5995 10.0782 0.6314 44 1 4.8793 9.6563 1.7944 45 1 2.3787 14.0618 4.8004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184348134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:58 Heat of formation + Delta-G solvation = -68.811827 kcal Electronic energy + Delta-G solvation = -25410.463285 eV Core-core repulsion = 21711.485766 eV Total energy + Delta-G solvation = -3698.977519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88944 -39.43707 -38.67536 -35.94858 -34.74631 -32.63789 -32.41784 -30.29516 -29.86782 -28.96472 -27.21850 -25.86759 -25.36407 -23.44496 -22.70215 -21.50867 -20.41123 -19.69630 -18.01294 -17.82096 -16.70912 -16.53441 -16.14210 -15.99421 -15.49331 -15.40481 -14.99988 -14.79693 -14.48996 -14.26872 -14.01162 -13.79271 -13.49885 -13.27931 -13.10868 -12.84531 -12.75036 -12.57923 -12.33549 -12.29347 -12.10776 -11.67346 -11.41741 -11.17999 -11.04079 -11.03392 -10.96464 -10.77317 -10.72118 -10.51112 -9.81652 -9.39105 -9.05571 -9.02883 -8.83807 -8.31992 -8.22819 -6.49044 -6.20734 -3.91306 1.05224 1.14832 2.93933 3.05291 3.12670 3.23923 3.28063 3.31804 3.43471 3.74203 4.21322 4.30239 4.39573 4.49525 4.55690 4.65961 4.77732 4.79670 4.85356 4.87484 5.01446 5.10010 5.12724 5.14207 5.18089 5.22359 5.28501 5.38874 5.54353 5.57969 5.62144 5.67033 5.69801 5.77274 5.83260 5.91216 5.93026 6.06876 6.09039 6.14902 6.16600 6.38020 6.51217 6.64108 7.09306 7.59936 7.73152 8.35758 8.64034 9.24340 10.86588 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.022913 B = 0.002001 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.741312 B =13990.980769 C =14978.332602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.125 3.875 4 C -0.207 4.207 5 C -0.076 4.076 6 C -0.104 4.104 7 C -0.032 4.032 8 C -0.157 4.157 9 C -0.082 4.082 10 C -0.119 4.119 11 C -0.117 4.117 12 C -0.053 4.053 13 H 0.087 0.913 14 C 0.126 3.874 15 N -0.738 5.738 16 C 0.531 3.469 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 -26.177 -13.065 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.226 4.226 5 C -0.094 4.094 6 C -0.105 4.105 7 C -0.032 4.032 8 C -0.176 4.176 9 C -0.119 4.119 10 C -0.156 4.156 11 C -0.154 4.154 12 C -0.071 4.071 13 H 0.105 0.895 14 C 0.002 3.998 15 N -0.393 5.393 16 C 0.317 3.683 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.573 -26.735 -11.516 29.153 hybrid contribution 1.394 1.528 -1.478 2.542 sum 2.966 -25.207 -12.993 28.514 Atomic orbital electron populations 1.23058 0.78314 1.03896 1.01514 1.86050 1.21444 1.27029 1.88845 1.18914 0.92324 0.84119 0.96634 1.21178 1.00093 0.92294 1.08987 1.21111 0.94052 0.97463 0.96780 1.19283 0.93009 0.93842 1.04345 1.19366 0.95521 0.91268 0.97032 1.20350 0.91331 0.98050 1.07842 1.20511 0.90538 0.98401 1.02432 1.21548 0.99920 0.94031 1.00124 1.21644 0.93881 0.99364 1.00537 1.20182 0.95145 0.91921 0.99888 0.89527 1.21435 0.97412 0.81163 0.99744 1.46005 1.45177 1.09587 1.38512 1.20296 0.81564 0.86284 0.80134 1.90703 1.31291 1.81826 1.35392 1.23532 1.04623 0.95393 1.06849 1.85402 1.54052 1.03239 1.40698 1.22829 1.27774 0.95380 1.22424 0.90979 1.24996 0.95173 0.98960 0.94486 1.70013 1.30338 1.30592 1.19352 0.86224 0.79549 0.81442 0.78278 1.19950 1.20821 1.19944 0.92633 0.88280 0.92511 0.85429 0.85260 0.85416 0.90567 0.90212 0.91494 0.91123 0.91025 0.91069 0.91122 0.91610 0.76865 0.89252 0.89244 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.82 101.05 0.99 1.15 16 2 O -0.32 -3.05 10.50 -19.42 -0.20 -3.25 16 3 C 0.13 1.26 6.68 -39.32 -0.26 1.00 16 4 C -0.21 -1.97 9.04 -39.54 -0.36 -2.33 16 5 C -0.08 -0.75 9.02 -39.46 -0.36 -1.11 16 6 C -0.10 -1.01 5.43 -104.56 -0.57 -1.58 16 7 C -0.03 -0.29 5.74 -104.63 -0.60 -0.89 16 8 C -0.16 -1.51 9.55 -39.29 -0.38 -1.88 16 9 C -0.08 -0.58 5.67 -28.05 -0.16 -0.74 16 10 C -0.12 -0.79 5.98 -26.70 -0.16 -0.95 16 11 C -0.12 -0.94 4.99 -26.70 -0.13 -1.07 16 12 C -0.05 -0.47 2.28 -91.93 -0.21 -0.68 16 13 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 14 C 0.13 1.49 4.70 -4.04 -0.02 1.48 16 15 N -0.74 -9.67 5.27 -60.30 -0.32 -9.98 16 16 C 0.53 9.88 7.85 -10.99 -0.09 9.80 16 17 O -0.52 -11.85 15.86 5.56 0.09 -11.76 16 18 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 31 H 0.13 0.98 6.33 -52.49 -0.33 0.65 16 32 H 0.13 1.20 6.26 -52.49 -0.33 0.87 16 33 H 0.13 1.06 8.05 -52.49 -0.42 0.63 16 34 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.53 7.46 -51.93 -0.39 0.15 16 39 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 41 H 0.07 0.81 6.18 -51.93 -0.32 0.49 16 42 H 0.40 3.99 7.81 -40.82 -0.32 3.67 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -35.26 379.01 -9.77 -45.03 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.67 Total: 0.89 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.87 Total: -13.66 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.42 Total: -35.48 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.12 Total: -15.01 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.26 -9.77 -45.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184348134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.784 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds