Wall clock time and date at job start Tue Mar 31 2020 18:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35898 * 116.99920 * 2 1 4 4 C 1.38758 * 120.17737 * 0.02962 * 3 2 1 5 5 C 1.37829 * 119.71488 * 180.02562 * 4 3 2 6 6 C 1.38967 * 120.62344 * 359.97438 * 5 4 3 7 7 C 1.37712 * 119.76952 * 359.83448 * 6 5 4 8 8 C 1.38430 * 120.16895 * 179.97438 * 3 2 1 9 9 C 1.50638 * 122.56405 * 180.30997 * 7 6 5 10 10 C 1.52733 * 110.59770 * 342.46489 * 9 7 6 11 11 C 1.53329 * 108.36802 * 51.06644 * 10 9 7 12 12 C 1.50660 * 117.68163 * 179.77151 * 6 5 4 13 13 H 1.09001 * 109.21931 * 282.76385 * 12 6 5 14 14 C 1.52994 * 109.25144 * 42.21308 * 12 6 5 15 15 N 1.46504 * 109.47015 * 184.85942 * 14 12 6 16 16 C 1.34772 * 119.99934 * 185.26015 * 15 14 12 17 17 O 1.21277 * 120.00444 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99721 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47050 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99848 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00215 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99692 * 180.27496 * 20 19 18 23 23 N 1.31633 * 120.00158 * 359.72341 * 22 20 19 24 24 Si 1.86801 * 120.00002 * 179.72566 * 22 20 19 25 25 H 1.48501 * 109.47259 * 59.99522 * 24 22 20 26 26 H 1.48495 * 109.47280 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46806 * 299.99801 * 24 22 20 28 28 H 1.08999 * 109.46846 * 59.99712 * 1 2 3 29 29 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46865 * 299.99766 * 1 2 3 31 31 H 1.07997 * 120.14460 * 0.09559 * 4 3 2 32 32 H 1.07995 * 119.69308 * 179.97438 * 5 4 3 33 33 H 1.07995 * 119.75318 * 359.97438 * 8 3 2 34 34 H 1.09005 * 109.25190 * 222.17562 * 9 7 6 35 35 H 1.09000 * 109.22121 * 102.73014 * 9 7 6 36 36 H 1.09002 * 109.68107 * 291.34646 * 10 9 7 37 37 H 1.08996 * 109.71483 * 170.80541 * 10 9 7 38 38 H 1.08995 * 109.68135 * 170.33654 * 11 10 9 39 39 H 1.08999 * 109.68274 * 49.77355 * 11 10 9 40 40 H 1.09000 * 109.47191 * 64.86451 * 14 12 6 41 41 H 1.08994 * 109.47011 * 304.85804 * 14 12 6 42 42 H 0.97000 * 119.99364 * 5.26010 * 15 14 12 43 43 H 1.09000 * 109.47537 * 59.99797 * 18 16 15 44 44 H 1.09009 * 109.46846 * 299.99848 * 18 16 15 45 45 H 0.97006 * 119.99738 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2939 2.3769 0.0006 5 6 1.9295 3.5999 0.0001 6 6 3.3170 3.6765 -0.0005 7 6 4.0657 2.5207 0.0028 8 6 3.4282 1.2874 0.0005 9 6 5.5720 2.5304 0.0092 10 6 6.1024 3.8970 -0.4195 11 6 5.4059 4.9718 0.4236 12 6 3.9423 5.0473 -0.0064 13 1 3.8841 5.4639 -1.0120 14 6 3.1785 5.9542 0.9604 15 7 3.7081 7.3174 0.8728 16 6 3.2586 8.2703 1.7131 17 8 2.4159 7.9994 2.5422 18 6 3.8030 9.6726 1.6225 19 16 3.0083 10.7104 2.8746 20 6 3.8088 12.2465 2.5517 21 1 4.5463 12.3165 1.7659 22 6 3.4960 13.3652 3.3115 23 7 2.5975 13.2798 4.2696 24 14 4.3502 14.9919 2.9743 25 1 4.0726 15.4169 1.5788 26 1 3.8422 16.0221 3.9154 27 1 5.8146 14.8298 3.1603 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2151 2.3264 0.0027 32 1 1.3437 4.5072 0.0001 33 1 4.0151 0.3809 0.0014 34 1 5.9392 1.7699 -0.6800 35 1 5.9280 2.3060 1.0147 36 1 5.8853 4.0604 -1.4751 37 1 7.1789 3.9417 -0.2549 38 1 5.8869 5.9359 0.2594 39 1 5.4652 4.7061 1.4790 40 1 3.2980 5.5828 1.9782 41 1 2.1210 5.9577 0.6966 42 1 4.3824 7.5340 0.2099 43 1 3.5995 10.0782 0.6314 44 1 4.8793 9.6563 1.7944 45 1 2.3787 14.0618 4.8004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184348134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:57 Heat of formation + Delta-G solvation = -91.032442 kcal Electronic energy + Delta-G solvation = -25411.426843 eV Core-core repulsion = 21711.485766 eV Total energy + Delta-G solvation = -3699.941077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61480 -40.60653 -39.59985 -36.81732 -35.63029 -34.57299 -33.63564 -31.29506 -30.69559 -29.98913 -27.82289 -27.66690 -26.63507 -24.15601 -23.36624 -22.31806 -21.77759 -20.38803 -19.81336 -18.65194 -17.87358 -17.50752 -17.18018 -16.86667 -16.66650 -16.64738 -16.50683 -15.77194 -15.65717 -15.37681 -15.02119 -14.73608 -14.53850 -14.41806 -14.11200 -13.96103 -13.74527 -13.47390 -13.28146 -13.15821 -12.98386 -12.91417 -12.85275 -12.63882 -12.60706 -12.04902 -11.77190 -11.74406 -11.62790 -11.36403 -11.20479 -11.11767 -10.95448 -10.26418 -10.08446 -9.72682 -9.03734 -8.65693 -8.33387 -6.11583 0.34084 0.41036 1.28082 1.44881 1.48015 1.57733 1.63126 2.26859 2.30948 2.35896 2.71494 3.00565 3.33365 3.61355 3.70096 3.78565 3.88895 4.00491 4.02334 4.17821 4.21471 4.31535 4.32865 4.36027 4.37128 4.42157 4.52948 4.53720 4.61156 4.68225 4.72619 4.83640 4.89017 4.99110 5.05317 5.11467 5.13430 5.24783 5.36957 5.38020 5.42791 5.46815 5.52180 5.68089 5.83740 6.20779 6.43075 6.52551 7.07688 7.26339 8.75510 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.022913 B = 0.002001 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.741312 B =13990.980769 C =14978.332602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.113 3.887 4 C -0.215 4.215 5 C -0.089 4.089 6 C -0.116 4.116 7 C -0.034 4.034 8 C -0.169 4.169 9 C -0.082 4.082 10 C -0.113 4.113 11 C -0.118 4.118 12 C -0.040 4.040 13 H 0.103 0.897 14 C 0.129 3.871 15 N -0.709 5.709 16 C 0.533 3.467 17 O -0.568 6.568 18 C -0.129 4.129 19 S -0.154 6.154 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.262 1.262 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.059 0.941 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.417 0.583 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 -26.407 -15.212 30.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.068 3.932 4 C -0.234 4.234 5 C -0.107 4.107 6 C -0.117 4.117 7 C -0.034 4.034 8 C -0.187 4.187 9 C -0.119 4.119 10 C -0.151 4.151 11 C -0.156 4.156 12 C -0.058 4.058 13 H 0.121 0.879 14 C 0.005 3.995 15 N -0.363 5.363 16 C 0.319 3.681 17 O -0.446 6.446 18 C -0.280 4.280 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.186 1.186 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.255 0.745 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.599 -27.001 -13.715 30.498 hybrid contribution 0.736 1.422 -0.857 1.817 sum 4.335 -25.579 -14.573 29.756 Atomic orbital electron populations 1.23307 0.76669 1.05498 1.02028 1.86028 1.23249 1.26903 1.88805 1.19128 0.92801 0.84487 0.96742 1.21358 1.00914 0.92143 1.08973 1.21255 0.94500 0.97717 0.97233 1.19413 0.93054 0.94360 1.04855 1.19628 0.96757 0.90861 0.96189 1.20603 0.91501 0.98727 1.07918 1.20581 0.89001 0.99284 1.03046 1.21532 1.00539 0.92965 1.00036 1.21670 0.93263 1.00535 1.00086 1.20099 0.95243 0.90855 0.99644 0.87939 1.21501 0.97810 0.80495 0.99699 1.45705 1.44381 1.09098 1.37128 1.20080 0.81138 0.86525 0.80367 1.90694 1.33699 1.82454 1.37797 1.23371 1.04893 0.94807 1.04920 1.85607 1.56430 1.05745 1.44936 1.23177 1.27856 0.95574 1.22753 0.89787 1.26149 0.95787 1.03347 0.94007 1.70186 1.32143 1.31841 1.20648 0.84997 0.78573 0.75829 0.78555 1.18618 1.20501 1.18606 0.91842 0.86223 0.92249 0.84166 0.85179 0.84449 0.89117 0.89948 0.90890 0.89670 0.90005 0.92369 0.93021 0.92025 0.74549 0.87067 0.87059 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.82 113.37 1.11 1.32 16 2 O -0.34 -6.23 10.50 -92.40 -0.97 -7.20 16 3 C 0.11 2.25 6.68 22.44 0.15 2.40 16 4 C -0.22 -4.06 9.04 22.30 0.20 -3.86 16 5 C -0.09 -1.74 9.02 22.35 0.20 -1.54 16 6 C -0.12 -2.14 5.43 -19.83 -0.11 -2.25 16 7 C -0.03 -0.59 5.74 -19.87 -0.11 -0.70 16 8 C -0.17 -3.12 9.55 22.46 0.21 -2.90 16 9 C -0.08 -0.99 5.67 29.74 0.17 -0.82 16 10 C -0.11 -1.19 5.98 30.62 0.18 -1.01 16 11 C -0.12 -1.63 4.99 30.62 0.15 -1.47 16 12 C -0.04 -0.64 2.28 -11.64 -0.03 -0.67 16 13 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 14 C 0.13 2.94 4.70 86.38 0.41 3.34 16 15 N -0.71 -17.35 5.27 -463.08 -2.44 -19.79 16 16 C 0.53 19.52 7.85 87.66 0.69 20.20 16 17 O -0.57 -26.58 15.86 -3.02 -0.05 -26.63 16 18 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 19 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 20 C -0.55 -31.06 9.50 67.95 0.65 -30.42 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.67 5.49 84.86 0.47 1.14 16 23 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 24 Si 1.00 43.43 29.55 68.60 2.03 45.45 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 H 0.06 0.58 7.67 -2.39 -0.02 0.57 16 29 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.61 7.67 -2.39 -0.02 0.59 16 31 H 0.14 2.12 6.33 -2.91 -0.02 2.10 16 32 H 0.13 2.41 6.26 -2.91 -0.02 2.40 16 33 H 0.14 2.15 8.05 -2.91 -0.02 2.13 16 34 H 0.09 0.84 8.12 -2.38 -0.02 0.82 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.71 8.10 -2.39 -0.02 0.69 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.96 7.46 -2.39 -0.02 0.94 16 39 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 40 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 41 H 0.06 1.50 6.18 -2.39 -0.01 1.49 16 42 H 0.42 7.07 7.81 -92.71 -0.72 6.35 16 43 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 44 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 45 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -78.71 379.01 2.75 -75.95 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.28 Total: 19.66 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 4.78 Total: -21.82 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -2.16 Total: -75.68 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.02 Total: -33.83 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -78.71 2.75 -75.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184348134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.080 kcal (2) G-P(sol) polarization free energy of solvation -78.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds