Wall clock time and date at job start Tue Mar 31 2020 18:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00231 * 2 1 4 4 C 1.38880 * 111.00220 * 123.94795 * 2 1 3 5 5 C 1.38957 * 120.17288 * 299.98413 * 4 2 1 6 6 C 1.37954 * 120.05755 * 180.02562 * 5 4 2 7 7 C 1.38611 * 120.42803 * 0.02562 * 6 5 4 8 8 N 1.48021 * 119.82454 * 179.97438 * 7 6 5 9 9 O 1.21800 * 120.00169 * 0.02562 * 8 7 6 10 10 O 1.21800 * 119.99853 * 179.97438 * 8 7 6 11 11 C 1.37752 * 120.34966 * 359.71283 * 7 6 5 12 12 C 1.39739 * 119.92504 * 0.56275 * 11 7 6 13 13 C 1.47426 * 120.20745 * 179.71896 * 12 11 7 14 14 O 1.21600 * 120.00390 * 155.27524 * 13 12 11 15 15 N 1.34778 * 119.99828 * 335.27570 * 13 12 11 16 16 C 1.47585 * 134.49271 * 174.67861 * 15 13 12 17 17 C 1.53941 * 86.11840 * 155.35759 * 16 15 13 18 18 O 1.42908 * 113.73897 * 269.15106 * 17 16 15 19 19 C 1.50699 * 113.74456 * 137.95420 * 17 16 15 20 20 H 1.08004 * 120.00008 * 1.91865 * 19 17 16 21 21 C 1.37875 * 119.99976 * 181.92552 * 19 17 16 22 22 N 1.31518 * 120.00039 * 180.02562 * 21 19 17 23 23 Si 1.86799 * 120.00230 * 359.97438 * 21 19 17 24 24 H 1.48500 * 109.46931 * 270.00094 * 23 21 19 25 25 H 1.48498 * 109.47127 * 30.00200 * 23 21 19 26 26 H 1.48500 * 109.47109 * 150.00654 * 23 21 19 27 27 C 1.47815 * 134.45848 * 354.53836 * 15 13 12 28 28 H 1.09002 * 109.47433 * 296.05082 * 1 2 3 29 29 H 1.09004 * 109.46880 * 56.04825 * 1 2 3 30 30 H 1.08996 * 109.47058 * 176.05133 * 1 2 3 31 31 H 1.09000 * 109.47537 * 183.95592 * 3 2 1 32 32 H 1.09007 * 109.46968 * 303.95279 * 3 2 1 33 33 H 1.08999 * 109.47661 * 63.94858 * 3 2 1 34 34 H 1.07993 * 119.97416 * 0.03557 * 5 4 2 35 35 H 1.08004 * 119.78426 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.03655 * 180.30128 * 11 7 6 37 37 H 1.08991 * 113.77077 * 41.05045 * 16 15 13 38 38 H 1.09002 * 113.76571 * 269.65717 * 16 15 13 39 39 H 0.96702 * 113.99807 * 178.07262 * 18 17 16 40 40 H 0.96997 * 120.00173 * 180.02562 * 22 21 19 41 41 H 1.09003 * 113.76908 * 90.38024 * 27 15 13 42 42 H 1.08999 * 113.83890 * 318.92041 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9667 -0.7240 1.0755 5 6 1.6566 -0.3451 2.3760 6 6 2.1527 -1.0658 3.4426 7 6 2.9626 -2.1700 3.2278 8 7 3.4881 -2.9332 4.3821 9 8 3.2083 -2.5907 5.5170 10 8 4.1997 -3.9042 4.1970 11 6 3.2766 -2.5640 1.9458 12 6 2.7868 -1.8413 0.8547 13 6 3.1240 -2.2538 -0.5199 14 8 2.3907 -1.9534 -1.4422 15 7 4.2452 -2.9641 -0.7544 16 6 4.8292 -3.6119 -1.9450 17 6 6.1863 -3.4548 -1.2357 18 8 6.8596 -2.2330 -1.5459 19 6 7.0778 -4.6638 -1.3566 20 1 6.7525 -5.5194 -1.9298 21 6 8.3086 -4.6777 -0.7354 22 7 9.0868 -5.7326 -0.8413 23 14 8.8715 -3.1976 0.2556 24 1 9.6064 -2.2593 -0.6303 25 1 7.6889 -2.5097 0.8330 26 1 9.7668 -3.6472 1.3517 27 6 5.3848 -3.4045 0.0776 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7044 1.8724 0.9232 34 1 1.0264 0.5141 2.5519 35 1 1.9085 -0.7676 4.4515 36 1 3.9041 -3.4280 1.7842 37 1 4.7384 -3.0204 -2.8560 38 1 4.5199 -4.6487 -2.0771 39 1 7.6988 -2.1170 -1.0796 40 1 9.9525 -5.7425 -0.4040 41 1 5.2391 -4.3803 0.5411 42 1 5.7369 -2.6477 0.7786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186837777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:04 Heat of formation + Delta-G solvation = 23.426357 kcal Electronic energy + Delta-G solvation = -29870.840991 eV Core-core repulsion = 25629.570005 eV Total energy + Delta-G solvation = -4241.270986 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.29772 -40.82348 -39.49844 -37.43598 -37.12513 -36.63638 -34.52567 -32.58045 -32.12762 -31.28760 -28.89253 -27.94924 -26.92130 -25.92001 -25.55887 -24.25612 -23.87544 -21.58298 -20.70221 -19.75036 -18.78140 -18.31276 -17.61607 -17.49238 -17.24490 -16.75221 -16.40394 -16.21554 -15.59097 -15.25150 -14.91032 -14.61330 -14.24288 -13.82975 -13.73415 -13.60444 -13.33323 -13.02391 -12.80208 -12.62731 -12.57658 -12.29351 -12.21657 -12.02872 -12.02042 -11.63153 -11.33068 -11.30590 -11.19732 -10.99464 -10.65406 -10.16791 -9.94758 -9.77759 -9.57319 -9.39888 -9.07130 -8.81892 -8.70710 -8.10930 -6.44588 -4.51459 -0.40421 0.35943 1.06759 1.23899 2.57464 2.96963 2.98327 3.11290 3.16356 3.31089 3.44964 4.00426 4.01009 4.09461 4.40271 4.45631 4.63074 4.74851 4.83884 4.89150 4.97671 5.08551 5.15364 5.18454 5.19002 5.32764 5.47712 5.54098 5.57520 5.60033 5.81847 5.93578 5.97182 6.12642 6.24020 6.27315 6.34896 6.48013 6.52681 6.82984 7.15732 7.54572 7.99485 8.12310 8.44279 8.49584 8.59358 9.12666 10.67542 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.004843 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.755397 B = 5779.980964 C = 7497.706565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.499 5.499 3 C 0.029 3.971 4 C 0.195 3.805 5 C -0.161 4.161 6 C -0.030 4.030 7 C -0.056 4.056 8 N 0.029 4.971 9 O -0.164 6.164 10 O -0.148 6.148 11 C -0.020 4.020 12 C -0.098 4.098 13 C 0.575 3.425 14 O -0.511 6.511 15 N -0.632 5.632 16 C 0.133 3.867 17 C 0.199 3.801 18 O -0.553 6.553 19 C -0.538 4.538 20 H 0.093 0.907 21 C 0.084 3.916 22 N -0.873 5.873 23 Si 0.855 3.145 24 H -0.267 1.267 25 H -0.258 1.258 26 H -0.281 1.281 27 C 0.052 3.948 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.353 0.647 40 H 0.272 0.728 41 H 0.101 0.899 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.670 12.101 7.227 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.220 5.220 3 C -0.117 4.117 4 C 0.099 3.901 5 C -0.182 4.182 6 C -0.050 4.050 7 C -0.139 4.139 8 N 0.549 4.451 9 O -0.379 6.379 10 O -0.366 6.366 11 C -0.040 4.040 12 C -0.103 4.103 13 C 0.362 3.638 14 O -0.387 6.387 15 N -0.367 5.367 16 C 0.011 3.989 17 C 0.158 3.842 18 O -0.364 6.364 19 C -0.576 4.576 20 H 0.111 0.889 21 C -0.122 4.122 22 N -0.508 5.508 23 Si 0.683 3.317 24 H -0.193 1.193 25 H -0.183 1.183 26 H -0.207 1.207 27 C -0.071 4.071 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.184 0.816 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.204 0.796 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.686 12.529 5.406 20.790 hybrid contribution 0.853 0.795 2.194 2.484 sum -14.832 13.324 7.599 21.337 Atomic orbital electron populations 1.22445 0.84412 1.03375 1.00931 1.59261 1.09152 1.14214 1.39329 1.22513 1.01599 0.86415 1.01199 1.19141 0.90409 0.91257 0.89313 1.21697 1.02953 1.01836 0.91742 1.20977 0.91667 0.90721 1.01634 1.21003 1.07543 0.99121 0.86270 1.43541 0.99018 1.00372 1.02128 1.94511 1.62680 1.72630 1.08034 1.94613 1.33253 1.16728 1.92044 1.21538 0.94384 0.99158 0.88953 1.20141 0.99706 0.96245 0.94188 1.17187 0.80279 0.79372 0.86927 1.90798 1.49367 1.54827 1.43711 1.50128 1.19950 1.51322 1.15305 1.23308 0.88914 0.97123 0.89521 1.20516 0.90210 0.84169 0.89348 1.86468 1.37410 1.41717 1.70778 1.21202 1.01326 1.00607 1.34442 0.88921 1.24975 0.96221 0.95800 0.95239 1.69842 1.10503 1.28344 1.42125 0.87396 0.79990 0.83343 0.80960 1.19329 1.18320 1.20705 1.24879 0.84095 0.99297 0.98790 0.95162 0.90057 0.90721 0.90848 0.89927 0.94967 0.83304 0.82609 0.81571 0.90292 0.88427 0.79568 0.91790 0.88151 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.34 60.06 0.56 0.88 16 2 N -0.50 -6.02 3.22 -186.63 -0.60 -6.62 16 3 C 0.03 0.27 9.38 60.06 0.56 0.84 16 4 C 0.20 2.42 4.70 -83.61 -0.39 2.03 16 5 C -0.16 -1.50 8.55 -39.42 -0.34 -1.84 16 6 C -0.03 -0.30 9.54 -39.55 -0.38 -0.68 16 7 C -0.06 -0.74 6.84 -79.99 -0.55 -1.29 16 8 N 0.03 0.44 4.45 33.94 0.15 0.59 16 9 O -0.16 -2.39 18.43 -29.46 -0.54 -2.93 16 10 O -0.15 -2.44 18.43 -29.46 -0.54 -2.98 16 11 C -0.02 -0.29 8.32 -39.20 -0.33 -0.62 16 12 C -0.10 -1.48 5.83 -104.80 -0.61 -2.09 16 13 C 0.57 10.55 7.75 -12.52 -0.10 10.46 16 14 O -0.51 -10.40 16.18 5.28 0.09 -10.32 16 15 N -0.63 -12.04 3.58 -179.38 -0.64 -12.68 16 16 C 0.13 2.62 8.23 -2.97 -0.02 2.60 16 17 C 0.20 4.36 1.06 -90.85 -0.10 4.27 16 18 O -0.55 -12.67 13.35 -35.23 -0.47 -13.14 16 19 C -0.54 -13.50 9.19 -34.44 -0.32 -13.82 16 20 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 21 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 22 N -0.87 -24.11 13.96 55.43 0.77 -23.34 16 23 Si 0.85 18.72 24.31 -169.99 -4.13 14.59 16 24 H -0.27 -5.69 7.05 56.52 0.40 -5.29 16 25 H -0.26 -5.29 5.16 56.52 0.29 -5.00 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.05 1.01 4.76 -2.84 -0.01 0.99 16 28 H 0.03 0.21 7.11 -51.93 -0.37 -0.16 16 29 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.69 8.12 -51.92 -0.42 0.26 16 33 H 0.03 0.23 7.33 -51.93 -0.38 -0.15 16 34 H 0.15 0.93 7.01 -52.49 -0.37 0.56 16 35 H 0.16 1.21 7.59 -52.48 -0.40 0.81 16 36 H 0.17 2.50 5.07 -52.49 -0.27 2.23 16 37 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 38 H 0.10 1.78 8.09 -51.93 -0.42 1.36 16 39 H 0.35 7.75 3.57 45.56 0.16 7.91 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.10 1.83 7.70 -51.93 -0.40 1.43 16 42 H 0.07 1.31 6.55 -51.93 -0.34 0.97 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -30.51 351.23 -7.30 -37.82 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.56 Total: 9.95 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -2.11 Total: 3.78 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.32 Total: -42.06 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.47 Total: -29.37 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.13 Total: 14.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.51 -7.30 -37.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186837777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.244 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds