Wall clock time and date at job start Tue Mar 31 2020 18:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00231 * 2 1 4 4 C 1.38880 * 111.00220 * 123.94795 * 2 1 3 5 5 C 1.38957 * 120.17288 * 299.98413 * 4 2 1 6 6 C 1.37954 * 120.05755 * 180.02562 * 5 4 2 7 7 C 1.38611 * 120.42803 * 0.02562 * 6 5 4 8 8 N 1.48021 * 119.82454 * 179.97438 * 7 6 5 9 9 O 1.21800 * 120.00169 * 0.02562 * 8 7 6 10 10 O 1.21800 * 119.99853 * 179.97438 * 8 7 6 11 11 C 1.37752 * 120.34966 * 359.71283 * 7 6 5 12 12 C 1.39739 * 119.92504 * 0.56275 * 11 7 6 13 13 C 1.47426 * 120.20745 * 179.71896 * 12 11 7 14 14 O 1.21600 * 120.00390 * 155.27524 * 13 12 11 15 15 N 1.34778 * 119.99828 * 335.27570 * 13 12 11 16 16 C 1.47585 * 134.49271 * 174.67861 * 15 13 12 17 17 C 1.53941 * 86.11840 * 155.35759 * 16 15 13 18 18 O 1.42908 * 113.73897 * 269.15106 * 17 16 15 19 19 C 1.50699 * 113.74456 * 137.95420 * 17 16 15 20 20 H 1.08004 * 120.00008 * 1.91865 * 19 17 16 21 21 C 1.37875 * 119.99976 * 181.92552 * 19 17 16 22 22 N 1.31518 * 120.00039 * 180.02562 * 21 19 17 23 23 Si 1.86799 * 120.00230 * 359.97438 * 21 19 17 24 24 H 1.48500 * 109.46931 * 270.00094 * 23 21 19 25 25 H 1.48498 * 109.47127 * 30.00200 * 23 21 19 26 26 H 1.48500 * 109.47109 * 150.00654 * 23 21 19 27 27 C 1.47815 * 134.45848 * 354.53836 * 15 13 12 28 28 H 1.09002 * 109.47433 * 296.05082 * 1 2 3 29 29 H 1.09004 * 109.46880 * 56.04825 * 1 2 3 30 30 H 1.08996 * 109.47058 * 176.05133 * 1 2 3 31 31 H 1.09000 * 109.47537 * 183.95592 * 3 2 1 32 32 H 1.09007 * 109.46968 * 303.95279 * 3 2 1 33 33 H 1.08999 * 109.47661 * 63.94858 * 3 2 1 34 34 H 1.07993 * 119.97416 * 0.03557 * 5 4 2 35 35 H 1.08004 * 119.78426 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.03655 * 180.30128 * 11 7 6 37 37 H 1.08991 * 113.77077 * 41.05045 * 16 15 13 38 38 H 1.09002 * 113.76571 * 269.65717 * 16 15 13 39 39 H 0.96702 * 113.99807 * 178.07262 * 18 17 16 40 40 H 0.96997 * 120.00173 * 180.02562 * 22 21 19 41 41 H 1.09003 * 113.76908 * 90.38024 * 27 15 13 42 42 H 1.08999 * 113.83890 * 318.92041 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9667 -0.7240 1.0755 5 6 1.6566 -0.3451 2.3760 6 6 2.1527 -1.0658 3.4426 7 6 2.9626 -2.1700 3.2278 8 7 3.4881 -2.9332 4.3821 9 8 3.2083 -2.5907 5.5170 10 8 4.1997 -3.9042 4.1970 11 6 3.2766 -2.5640 1.9458 12 6 2.7868 -1.8413 0.8547 13 6 3.1240 -2.2538 -0.5199 14 8 2.3907 -1.9534 -1.4422 15 7 4.2452 -2.9641 -0.7544 16 6 4.8292 -3.6119 -1.9450 17 6 6.1863 -3.4548 -1.2357 18 8 6.8596 -2.2330 -1.5459 19 6 7.0778 -4.6638 -1.3566 20 1 6.7525 -5.5194 -1.9298 21 6 8.3086 -4.6777 -0.7354 22 7 9.0868 -5.7326 -0.8413 23 14 8.8715 -3.1976 0.2556 24 1 9.6064 -2.2593 -0.6303 25 1 7.6889 -2.5097 0.8330 26 1 9.7668 -3.6472 1.3517 27 6 5.3848 -3.4045 0.0776 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7044 1.8724 0.9232 34 1 1.0264 0.5141 2.5519 35 1 1.9085 -0.7676 4.4515 36 1 3.9041 -3.4280 1.7842 37 1 4.7384 -3.0204 -2.8560 38 1 4.5199 -4.6487 -2.0771 39 1 7.6988 -2.1170 -1.0796 40 1 9.9525 -5.7425 -0.4040 41 1 5.2391 -4.3803 0.5411 42 1 5.7369 -2.6477 0.7786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186837777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:04 Heat of formation + Delta-G solvation = 1.828708 kcal Electronic energy + Delta-G solvation = -29871.777535 eV Core-core repulsion = 25629.570005 eV Total energy + Delta-G solvation = -4242.207530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.38468 -41.97508 -40.89211 -38.94717 -38.01041 -37.75604 -36.24552 -34.57076 -33.20504 -32.21012 -30.50325 -28.62016 -27.96592 -27.54333 -27.22687 -25.12493 -25.04553 -22.56122 -22.13330 -21.17699 -19.87984 -19.74285 -19.29628 -18.71194 -18.27638 -18.12255 -17.93546 -17.30411 -16.78890 -16.44891 -16.11206 -15.70997 -15.53366 -15.30847 -15.04411 -14.87003 -14.51503 -14.35481 -14.23127 -14.05310 -13.79347 -13.31562 -13.24755 -13.04161 -12.95986 -12.76343 -12.74595 -12.71317 -12.49535 -12.40560 -12.36285 -11.98911 -11.53363 -11.14418 -10.93656 -10.68105 -10.59057 -10.51947 -9.73117 -9.49562 -8.44860 -6.56738 -1.42714 -0.62640 0.04206 0.20427 1.19976 1.23979 1.36107 1.49734 1.69710 2.14465 2.20971 2.51516 2.74334 2.94882 3.13758 3.28447 3.47904 3.58952 3.69519 3.82624 4.00371 4.15683 4.28180 4.30010 4.31959 4.34596 4.42721 4.47030 4.53250 4.53773 4.62620 4.68257 4.83914 4.86429 4.89019 4.93145 4.97698 5.17576 5.26036 5.79361 6.01983 6.03100 6.39056 6.51568 6.59619 6.67678 7.02936 7.11722 8.70532 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.004843 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.755397 B = 5779.980964 C = 7497.706565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.534 5.534 3 C 0.029 3.971 4 C 0.203 3.797 5 C -0.139 4.139 6 C -0.007 4.007 7 C -0.068 4.068 8 N 0.031 4.969 9 O -0.133 6.133 10 O -0.211 6.211 11 C -0.026 4.026 12 C -0.126 4.126 13 C 0.574 3.426 14 O -0.537 6.537 15 N -0.635 5.635 16 C 0.132 3.868 17 C 0.188 3.812 18 O -0.559 6.559 19 C -0.543 4.543 20 H 0.061 0.939 21 C 0.034 3.966 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.253 1.253 25 H -0.237 1.237 26 H -0.282 1.282 27 C 0.069 3.931 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.195 0.805 35 H 0.191 0.809 36 H 0.150 0.850 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.356 0.644 40 H 0.274 0.726 41 H 0.105 0.895 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.952 15.771 9.644 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.256 5.256 3 C -0.116 4.116 4 C 0.106 3.894 5 C -0.160 4.160 6 C -0.026 4.026 7 C -0.151 4.151 8 N 0.548 4.452 9 O -0.358 6.358 10 O -0.414 6.414 11 C -0.046 4.046 12 C -0.131 4.131 13 C 0.364 3.636 14 O -0.414 6.414 15 N -0.370 5.370 16 C 0.011 3.989 17 C 0.147 3.853 18 O -0.371 6.371 19 C -0.581 4.581 20 H 0.079 0.921 21 C -0.168 4.168 22 N -0.557 5.557 23 Si 0.734 3.266 24 H -0.179 1.179 25 H -0.161 1.161 26 H -0.208 1.208 27 C -0.054 4.054 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.212 0.788 35 H 0.208 0.792 36 H 0.167 0.833 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.208 0.792 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.925 16.124 7.750 25.326 hybrid contribution 1.395 -0.265 1.411 2.002 sum -16.530 15.859 9.161 24.672 Atomic orbital electron populations 1.22490 0.82676 1.02820 1.03043 1.59173 1.10856 1.15600 1.39962 1.22547 1.00292 0.85426 1.03318 1.19321 0.89000 0.90077 0.90983 1.22072 1.02031 1.02265 0.89612 1.21435 0.89105 0.88524 1.03569 1.21085 1.08890 1.00165 0.84965 1.43769 0.98669 1.00209 1.02545 1.94465 1.61104 1.71685 1.08589 1.94638 1.35860 1.18579 1.92304 1.21313 0.94680 0.98891 0.89706 1.19891 1.02551 0.98597 0.92067 1.17689 0.79314 0.78255 0.88328 1.90770 1.49915 1.55681 1.45081 1.50073 1.20570 1.51821 1.14512 1.23249 0.88039 0.97852 0.89801 1.20573 0.90294 0.82747 0.91712 1.86460 1.37733 1.41604 1.71266 1.21337 1.02115 1.00925 1.33682 0.92083 1.25724 0.96234 0.98523 0.96292 1.69976 1.11186 1.30721 1.43850 0.86478 0.80236 0.80240 0.79620 1.17872 1.16127 1.20833 1.24601 0.83485 0.99884 0.97382 0.91829 0.89283 0.92469 0.92929 0.89067 0.91723 0.78774 0.79186 0.83261 0.90605 0.87555 0.79201 0.91669 0.87693 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.34 127.69 1.19 1.71 16 2 N -0.53 -11.36 3.22 -744.38 -2.39 -13.75 16 3 C 0.03 0.46 9.38 127.69 1.20 1.65 16 4 C 0.20 4.39 4.70 38.71 0.18 4.58 16 5 C -0.14 -1.82 8.55 22.37 0.19 -1.63 16 6 C -0.01 -0.10 9.54 22.29 0.21 0.11 16 7 C -0.07 -1.61 6.84 36.35 0.25 -1.36 16 8 N 0.03 0.88 4.45 -46.52 -0.21 0.67 16 9 O -0.13 -3.46 18.43 18.89 0.35 -3.11 16 10 O -0.21 -7.02 18.43 18.89 0.35 -6.67 16 11 C -0.03 -0.72 8.32 22.52 0.19 -0.53 16 12 C -0.13 -3.65 5.83 -19.98 -0.12 -3.77 16 13 C 0.57 21.08 7.75 86.66 0.67 21.75 16 14 O -0.54 -21.95 16.18 -4.03 -0.07 -22.01 16 15 N -0.64 -24.44 3.58 -843.50 -3.02 -27.46 16 16 C 0.13 5.37 8.23 86.48 0.71 6.09 16 17 C 0.19 8.36 1.06 -10.88 -0.01 8.35 16 18 O -0.56 -25.42 13.35 -148.98 -1.99 -27.41 16 19 C -0.54 -28.25 9.19 25.60 0.24 -28.01 16 20 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 21 C 0.03 1.80 5.47 84.65 0.46 2.26 16 22 N -0.92 -52.67 13.96 21.45 0.30 -52.37 16 23 Si 0.91 38.62 24.31 68.60 1.67 40.29 16 24 H -0.25 -10.18 7.05 99.48 0.70 -9.48 16 25 H -0.24 -9.18 5.16 99.48 0.51 -8.66 16 26 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.07 2.69 4.76 86.44 0.41 3.11 16 28 H 0.06 0.51 7.11 -2.39 -0.02 0.49 16 29 H 0.09 1.16 8.12 -2.38 -0.02 1.14 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.24 8.12 -2.38 -0.02 1.22 16 33 H 0.06 0.58 7.33 -2.39 -0.02 0.56 16 34 H 0.20 0.87 7.01 -2.91 -0.02 0.85 16 35 H 0.19 1.64 7.59 -2.91 -0.02 1.62 16 36 H 0.15 4.59 5.07 -2.91 -0.01 4.58 16 37 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.11 4.05 8.09 -2.39 -0.02 4.03 16 39 H 0.36 15.23 3.57 -74.06 -0.26 14.96 16 40 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.11 3.95 7.70 -2.39 -0.02 3.93 16 42 H 0.08 2.83 6.55 -2.39 -0.02 2.82 16 Total: -1.00 -69.76 351.23 1.39 -68.37 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.62 Total: 29.17 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 5.78 Total: 14.29 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -5.32 Total: -92.91 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -1.36 Total: -59.21 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.67 Total: 40.29 kcal Total: -69.76 1.39 -68.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186837777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.197 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds