Wall clock time and date at job start Tue Mar 31 2020 19:08:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35902 * 117.00118 * 2 1
4 4 C 1.38858 * 119.98453 * 359.97438 * 3 2 1
5 5 C 1.38244 * 120.23851 * 180.02562 * 4 3 2
6 6 C 1.38012 * 120.20679 * 359.97438 * 5 4 3
7 7 C 1.39570 * 119.96580 * 359.97438 * 6 5 4
8 8 C 1.47854 * 120.11607 * 180.02562 * 7 6 5
9 9 O 1.21545 * 119.99866 * 145.33576 * 8 7 6
10 10 N 1.34779 * 119.99939 * 325.32670 * 8 7 6
11 11 C 1.46966 * 120.59020 * 175.12826 * 10 8 7
12 12 C 1.53375 * 108.63348 * 235.20963 * 11 10 8
13 13 N 1.46970 * 108.63204 * 310.57489 * 12 11 10
14 14 C 1.36938 * 120.59039 * 235.22632 * 13 12 11
15 15 H 1.07995 * 120.00316 * 28.60579 * 14 13 12
16 16 C 1.38820 * 119.99588 * 208.60214 * 14 13 12
17 17 N 1.31618 * 119.99977 * 16.94982 * 16 14 13
18 18 Si 1.86797 * 119.99946 * 196.95063 * 16 14 13
19 19 H 1.48504 * 109.47079 * 60.00084 * 18 16 14
20 20 H 1.48497 * 109.47001 * 180.02562 * 18 16 14
21 21 H 1.48496 * 109.47078 * 300.00109 * 18 16 14
22 22 C 1.46965 * 118.80988 * 55.23057 * 13 12 11
23 23 C 1.46963 * 120.59513 * 355.11273 * 10 8 7
24 24 C 1.38460 * 119.98368 * 180.25603 * 3 2 1
25 25 N 1.48011 * 120.10604 * 359.97438 * 24 3 2
26 26 O 1.21800 * 120.00152 * 270.26019 * 25 24 3
27 27 O 1.21801 * 120.00020 * 90.25419 * 25 24 3
28 28 H 1.09006 * 109.47323 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47093 * 299.99881 * 1 2 3
30 30 H 1.08993 * 109.47156 * 60.00127 * 1 2 3
31 31 H 1.07999 * 119.88026 * 0.02562 * 4 3 2
32 32 H 1.07995 * 119.89985 * 179.97438 * 5 4 3
33 33 H 1.08001 * 120.01515 * 179.97438 * 6 5 4
34 34 H 1.09003 * 109.61487 * 354.95092 * 11 10 8
35 35 H 1.08996 * 109.61097 * 115.46760 * 11 10 8
36 36 H 1.08994 * 109.61307 * 70.32223 * 12 11 10
37 37 H 1.09003 * 109.60716 * 190.83797 * 12 11 10
38 38 H 0.96996 * 119.99930 * 179.97438 * 17 16 14
39 39 H 1.09001 * 109.60550 * 185.02296 * 22 13 12
40 40 H 1.09003 * 109.74634 * 64.60221 * 22 13 12
41 41 H 1.09003 * 109.60822 * 244.53073 * 23 10 8
42 42 H 1.08992 * 109.61240 * 5.04831 * 23 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 1.2895 2.3753 -0.0005
5 6 1.9116 3.6098 -0.0011
6 6 3.2892 3.6931 -0.0005
7 6 4.0580 2.5282 0.0011
8 6 5.5341 2.6136 0.0022
9 8 6.1903 1.7848 0.6022
10 7 6.1520 3.6102 -0.6622
11 6 7.6108 3.7702 -0.5826
12 6 7.9223 5.1954 -0.1090
13 7 7.1495 6.1413 -0.9263
14 6 7.7774 7.1537 -1.6015
15 1 8.7980 7.0304 -1.9325
16 6 7.1021 8.3385 -1.8606
17 7 6.0069 8.6315 -1.1919
18 14 7.7476 9.5170 -3.1583
19 1 7.7862 8.8308 -4.4747
20 1 6.8531 10.6994 -3.2419
21 1 9.1168 9.9577 -2.7894
22 6 5.6907 5.9812 -1.0057
23 6 5.3792 4.5562 -1.4793
24 6 3.4287 1.2829 -0.0054
25 7 4.2368 0.0429 -0.0105
26 8 4.5694 -0.4717 1.0422
27 8 4.5690 -0.4632 -1.0675
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 0.2111 2.3162 -0.0005
32 1 1.3179 4.5119 -0.0019
33 1 3.7721 4.6591 -0.0014
34 1 8.0196 3.0513 0.1273
35 1 8.0508 3.6073 -1.5664
36 1 7.6412 5.3024 0.9386
37 1 8.9874 5.3954 -0.2269
38 1 5.5352 9.4596 -1.3727
39 1 5.2820 6.7003 -1.7156
40 1 5.2482 6.1453 -0.0231
41 1 5.6604 4.4492 -2.5270
42 1 4.3142 4.3563 -1.3615
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000192598653.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:08:55
Heat of formation + Delta-G solvation = -7.066648 kcal
Electronic energy + Delta-G solvation = -29907.864807 eV
Core-core repulsion = 25665.271546 eV
Total energy + Delta-G solvation = -4242.593261 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 335.136 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.42172 -41.90870 -41.04841 -38.81763 -38.59739 -37.62754 -35.82365 -33.65045
-33.31500 -32.46890 -31.35918 -29.04813 -28.61963 -27.66839 -25.95129 -24.84257
-24.33051 -23.65124 -22.45072 -21.02687 -20.14606 -19.94784 -19.59772 -18.81576
-18.45481 -17.81369 -17.29855 -17.19528 -17.06391 -16.76003 -16.62180 -16.26605
-15.44523 -15.35719 -15.24843 -15.12586 -14.91638 -14.44989 -13.92819 -13.87713
-13.53866 -13.37137 -12.97252 -12.85417 -12.76928 -12.65992 -12.56386 -12.35352
-12.33222 -12.30008 -12.20215 -12.09086 -11.89829 -11.75845 -11.24792 -10.78011
-10.61465 -10.10725 -9.79190 -8.70469 -7.91469 -5.38681 -0.88600 -0.65129
-0.34867 0.26506 1.24586 1.48155 1.50990 1.52697 1.59020 1.92071
2.08879 2.50482 2.92693 3.24408 3.35945 3.46203 3.51055 3.54830
3.80376 3.88437 4.08120 4.11037 4.21672 4.24560 4.31767 4.43517
4.51332 4.53697 4.57381 4.65013 4.69952 4.76615 4.88746 4.98617
5.04959 5.11740 5.15968 5.37009 5.51395 5.63464 5.83141 6.10091
6.34125 6.34949 6.67555 7.09484 7.74352 8.28253 9.14414
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.018663 B = 0.003397 C = 0.003012
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1499.915586 B = 8239.512512 C = 9294.559726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.010 3.990
2 O -0.339 6.339
3 C 0.168 3.832
4 C -0.153 4.153
5 C -0.023 4.023
6 C -0.120 4.120
7 C -0.068 4.068
8 C 0.533 3.467
9 O -0.573 6.573
10 N -0.580 5.580
11 C 0.103 3.897
12 C 0.135 3.865
13 N -0.607 5.607
14 C -0.271 4.271
15 H 0.066 0.934
16 C -0.037 4.037
17 N -0.926 5.926
18 Si 0.966 3.034
19 H -0.278 1.278
20 H -0.291 1.291
21 H -0.282 1.282
22 C 0.166 3.834
23 C 0.062 3.938
24 C -0.054 4.054
25 N 0.037 4.963
26 O -0.144 6.144
27 O -0.174 6.174
28 H 0.121 0.879
29 H 0.087 0.913
30 H 0.088 0.912
31 H 0.205 0.795
32 H 0.204 0.796
33 H 0.168 0.832
34 H 0.084 0.916
35 H 0.074 0.926
36 H 0.016 0.984
37 H 0.077 0.923
38 H 0.255 0.745
39 H 0.085 0.915
40 H 0.016 0.984
41 H 0.069 0.931
42 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.961 -9.436 0.511 20.296
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 O -0.253 6.253
3 C 0.120 3.880
4 C -0.172 4.172
5 C -0.040 4.040
6 C -0.139 4.139
7 C -0.072 4.072
8 C 0.321 3.679
9 O -0.455 6.455
10 N -0.310 5.310
11 C -0.021 4.021
12 C 0.009 3.991
13 N -0.330 5.330
14 C -0.401 4.401
15 H 0.084 0.916
16 C -0.234 4.234
17 N -0.571 5.571
18 Si 0.794 3.206
19 H -0.204 1.204
20 H -0.217 1.217
21 H -0.208 1.208
22 C 0.039 3.961
23 C -0.061 4.061
24 C -0.136 4.136
25 N 0.566 4.434
26 O -0.371 6.371
27 O -0.392 6.392
28 H 0.139 0.861
29 H 0.106 0.894
30 H 0.107 0.893
31 H 0.222 0.778
32 H 0.220 0.780
33 H 0.185 0.815
34 H 0.103 0.897
35 H 0.093 0.907
36 H 0.034 0.966
37 H 0.095 0.905
38 H 0.064 0.936
39 H 0.103 0.897
40 H 0.034 0.966
41 H 0.087 0.913
42 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -18.029 -9.239 0.746 20.272
hybrid contribution 1.063 0.278 -0.425 1.178
sum -16.966 -8.961 0.320 19.190
Atomic orbital electron populations
1.23723 0.73312 1.06924 1.04281 1.86169 1.26357 1.25287 1.87440
1.18530 0.87226 0.88223 0.94035 1.22029 1.02998 0.88984 1.03194
1.21879 0.92644 0.99933 0.89552 1.21910 0.95637 0.96606 0.99706
1.19442 0.93353 0.91912 1.02507 1.18603 0.87717 0.81681 0.79859
1.90845 1.67188 1.41238 1.46206 1.47990 1.08877 1.28090 1.45997
1.22209 0.78826 0.98760 1.02312 1.21332 0.96849 0.87981 0.92949
1.44217 1.03094 1.31527 1.54187 1.19433 0.98844 0.92901 1.28938
0.91649 1.25705 0.98832 0.97815 1.01004 1.70091 1.20778 1.24965
1.41252 0.85375 0.77449 0.78119 0.79621 1.20441 1.21676 1.20787
1.21050 0.84218 0.91917 0.98885 1.23384 0.97786 0.90227 0.94685
1.20308 0.89539 0.83250 1.20524 1.43431 0.98505 1.01760 0.99747
1.94500 1.56855 1.64378 1.21319 1.94482 1.58294 1.65636 1.20743
0.86086 0.89413 0.89310 0.77776 0.77951 0.81505 0.89748 0.90743
0.96634 0.90472 0.93600 0.89671 0.96647 0.91261 0.85760
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.07 9.81 113.37 1.11 1.19 16
2 O -0.34 -7.02 10.25 -92.45 -0.95 -7.97 16
3 C 0.17 3.68 6.68 22.47 0.15 3.83 16
4 C -0.15 -1.74 9.03 22.42 0.20 -1.53 16
5 C -0.02 -0.27 10.03 22.22 0.22 -0.05 16
6 C -0.12 -2.60 7.38 22.54 0.17 -2.43 16
7 C -0.07 -2.11 5.42 -20.10 -0.11 -2.22 16
8 C 0.53 20.68 7.25 86.79 0.63 21.31 16
9 O -0.57 -26.39 14.68 6.27 0.09 -26.30 16
10 N -0.58 -21.46 2.95 -821.42 -2.42 -23.88 16
11 C 0.10 3.86 6.58 86.42 0.57 4.43 16
12 C 0.14 5.56 6.67 86.42 0.58 6.14 16
13 N -0.61 -28.31 2.97 -698.18 -2.07 -30.38 16
14 C -0.27 -13.88 9.58 84.04 0.80 -13.07 16
15 H 0.07 3.30 7.88 -2.91 -0.02 3.28 16
16 C -0.04 -1.89 4.92 84.86 0.42 -1.47 16
17 N -0.93 -48.98 11.19 21.65 0.24 -48.73 16
18 Si 0.97 41.53 29.59 68.60 2.03 43.56 16
19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16
20 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16
21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16
22 C 0.17 6.86 5.22 86.41 0.45 7.31 16
23 C 0.06 2.07 5.70 86.41 0.49 2.56 16
24 C -0.05 -1.71 6.14 36.74 0.23 -1.49 16
25 N 0.04 1.46 2.80 -45.60 -0.13 1.33 16
26 O -0.14 -6.05 18.59 22.90 0.43 -5.62 16
27 O -0.17 -7.11 19.25 18.89 0.36 -6.75 16
28 H 0.12 0.57 8.14 -2.38 -0.02 0.56 16
29 H 0.09 0.23 7.66 -2.38 -0.02 0.22 16
30 H 0.09 0.22 7.66 -2.39 -0.02 0.20 16
31 H 0.21 0.25 6.28 -2.91 -0.02 0.23 16
32 H 0.20 0.55 8.06 -2.91 -0.02 0.53 16
33 H 0.17 3.80 4.91 -2.91 -0.01 3.79 16
34 H 0.08 3.21 7.02 -2.39 -0.02 3.19 16
35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16
36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16
37 H 0.08 3.02 7.93 -2.39 -0.02 3.00 16
38 H 0.25 13.05 8.31 -92.71 -0.77 12.27 16
39 H 0.09 3.89 6.00 -2.39 -0.01 3.88 16
40 H 0.02 0.66 7.45 -2.39 -0.02 0.65 16
41 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16
42 H 0.13 3.31 3.56 -2.39 -0.01 3.30 16
Total: -1.00 -78.12 349.27 4.58 -73.54
By element:
Atomic # 1 Polarization: 5.62 SS G_CDS: 1.08 Total: 6.70 kcal
Atomic # 6 Polarization: 18.58 SS G_CDS: 5.91 Total: 24.49 kcal
Atomic # 7 Polarization: -97.28 SS G_CDS: -4.38 Total: -101.66 kcal
Atomic # 8 Polarization: -46.57 SS G_CDS: -0.07 Total: -46.64 kcal
Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal
Total: -78.12 4.58 -73.54 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000192598653.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.474 kcal
(2) G-P(sol) polarization free energy of solvation -78.118 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.643 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.067 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds