Wall clock time and date at job start Tue Mar 31 2020 18:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00669 * 2 1 4 4 C 1.50699 * 109.46992 * 293.95554 * 3 2 1 5 5 H 1.08001 * 120.00073 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00214 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99667 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00351 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46741 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46926 * 119.99710 * 8 6 4 11 11 H 1.48496 * 109.46935 * 239.99894 * 8 6 4 12 12 C 1.46908 * 110.99997 * 123.95633 * 2 1 3 13 13 C 1.50700 * 109.47093 * 66.03890 * 12 2 1 14 14 O 1.21238 * 119.99820 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99900 * 179.97438 * 13 12 2 16 16 C 1.34769 * 120.00084 * 180.02562 * 15 13 12 17 17 O 1.21548 * 120.00033 * 0.02562 * 16 15 13 18 18 N 1.34770 * 120.00380 * 180.02562 * 16 15 13 19 19 C 1.40121 * 120.00557 * 185.31947 * 18 16 15 20 20 C 1.38843 * 120.00252 * 213.31502 * 19 18 16 21 21 C 1.38182 * 120.06711 * 179.75177 * 20 19 18 22 22 C 1.38557 * 120.11865 * 0.44633 * 21 20 19 23 23 C 1.39280 * 119.94080 * 359.54920 * 22 21 20 24 24 C 1.38493 * 119.89559 * 0.22984 * 23 22 21 25 25 O 1.36503 * 108.63941 * 180.24968 * 23 22 21 26 26 C 1.43985 * 105.50462 * 342.69581 * 25 23 22 27 27 O 1.36603 * 131.44219 * 179.85832 * 22 21 20 28 28 H 1.09000 * 109.47210 * 296.05026 * 1 2 3 29 29 H 1.09005 * 109.46797 * 56.04757 * 1 2 3 30 30 H 1.09001 * 109.47619 * 176.04104 * 1 2 3 31 31 H 1.09000 * 109.46986 * 53.94874 * 3 2 1 32 32 H 1.08999 * 109.47860 * 173.95402 * 3 2 1 33 33 H 0.97005 * 119.99717 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46239 * 306.04622 * 12 2 1 35 35 H 1.08995 * 109.47151 * 186.04690 * 12 2 1 36 36 H 0.97001 * 120.00151 * 0.02562 * 15 13 12 37 37 H 0.97008 * 119.99872 * 5.31401 * 18 16 15 38 38 H 1.07998 * 119.96283 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.94262 * 180.33267 * 21 20 19 40 40 H 1.08005 * 120.01042 * 180.02562 * 24 23 22 41 41 H 1.08997 * 110.57335 * 268.59547 * 26 25 23 42 42 H 1.09000 * 110.57044 * 145.71344 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6371 2.0470 -1.2984 5 1 1.0747 1.5112 -2.0488 6 6 2.0270 3.3494 -1.5285 7 7 2.7114 4.0020 -0.6146 8 14 1.5833 4.1868 -3.1383 9 1 0.8159 3.2442 -3.9914 10 1 0.7554 5.3877 -2.8598 11 1 2.8252 4.5943 -3.8430 12 6 1.9954 -0.7661 1.1376 13 6 1.6368 -2.2205 0.9729 14 8 1.0054 -2.5831 0.0035 15 7 2.0187 -3.1182 1.9028 16 6 1.6984 -4.4189 1.7552 17 8 1.0655 -4.7825 0.7834 18 7 2.0799 -5.3166 2.6853 19 6 1.8451 -6.6825 2.4786 20 6 1.5665 -7.5101 3.5580 21 6 1.3298 -8.8563 3.3552 22 6 1.3788 -9.3858 2.0757 23 6 1.6580 -8.5580 0.9910 24 6 1.8906 -7.2080 1.1948 25 8 1.6434 -9.3109 -0.1475 26 6 1.7574 -10.6770 0.2929 27 8 1.1895 -10.6581 1.6159 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 1.5612 1.9273 0.8309 32 1 3.0798 1.3443 0.1082 33 1 2.9854 4.9184 -0.7763 34 1 1.5610 -0.3873 2.0627 35 1 3.0797 -0.6612 1.1757 36 1 2.5241 -2.8281 2.6782 37 1 2.5170 -5.0171 3.4979 38 1 1.5313 -7.1006 4.5567 39 1 1.1080 -9.4973 4.1957 40 1 2.1068 -6.5643 0.3550 41 1 2.8032 -10.9817 0.3294 42 1 1.1871 -11.3384 -0.3592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267056565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:46 Heat of formation + Delta-G solvation = -65.972864 kcal Electronic energy + Delta-G solvation = -27690.300755 eV Core-core repulsion = 23445.153129 eV Total energy + Delta-G solvation = -4245.147627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.47282 -41.40869 -39.35985 -37.74700 -36.56430 -35.96780 -34.90423 -34.28989 -32.53564 -30.85169 -29.57932 -28.47009 -27.00578 -26.15913 -24.68998 -23.69216 -23.31320 -22.01992 -20.73160 -20.34544 -19.27923 -18.67808 -18.18011 -17.51834 -17.07691 -16.68142 -16.29325 -16.17033 -15.60318 -14.99858 -14.95008 -14.77956 -14.59487 -14.26064 -14.15050 -14.02910 -13.84949 -13.58069 -13.31194 -13.21563 -13.14600 -12.51638 -11.91407 -11.89381 -11.62953 -11.51089 -11.16086 -10.96338 -10.85922 -10.69821 -10.53608 -10.24273 -10.07632 -9.98787 -9.50788 -9.15035 -9.00591 -8.46841 -8.11961 -7.34487 -6.06312 -4.06701 0.70401 0.88114 1.99039 2.13632 2.44632 3.06970 3.10300 3.31454 3.36750 3.38911 3.45597 3.60792 4.17258 4.32150 4.41849 4.53869 4.63026 4.67377 4.76053 4.89047 4.93402 5.18377 5.23231 5.30353 5.56888 5.59425 5.64319 5.73050 5.80945 5.90378 6.00626 6.22268 6.24615 6.32949 6.38616 6.79949 6.87045 7.13395 7.20998 7.24087 7.74835 7.96977 8.06775 8.10514 8.20037 8.46548 9.01585 9.57743 11.04729 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.001886 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.141126 B =14841.576663 C =15490.458009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.525 5.525 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.066 0.934 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.042 3.958 13 C 0.513 3.487 14 O -0.440 6.440 15 N -0.691 5.691 16 C 0.693 3.307 17 O -0.509 6.509 18 N -0.679 5.679 19 C 0.180 3.820 20 C -0.137 4.137 21 C -0.078 4.078 22 C 0.011 3.989 23 C 0.057 3.943 24 C -0.104 4.104 25 O -0.305 6.305 26 C 0.213 3.787 27 O -0.310 6.310 28 H 0.008 0.992 29 H 0.077 0.923 30 H 0.063 0.937 31 H -0.005 1.005 32 H 0.032 0.968 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.410 0.590 37 H 0.412 0.588 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.084 0.916 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -26.531 14.384 30.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.250 5.250 3 C 0.069 3.931 4 C -0.544 4.544 5 H 0.084 0.916 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.091 4.091 13 C 0.298 3.702 14 O -0.304 6.304 15 N -0.358 5.358 16 C 0.394 3.606 17 O -0.379 6.379 18 N -0.330 5.330 19 C 0.085 3.915 20 C -0.158 4.158 21 C -0.098 4.098 22 C -0.034 4.034 23 C 0.012 3.988 24 C -0.125 4.125 25 O -0.221 6.221 26 C 0.101 3.899 27 O -0.226 6.226 28 H 0.026 0.974 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.012 0.988 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.245 0.755 37 H 0.249 0.751 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.102 0.898 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.270 -27.151 12.237 29.808 hybrid contribution 0.204 1.102 0.735 1.340 sum 1.474 -26.049 12.972 29.137 Atomic orbital electron populations 1.22400 0.87781 1.01255 1.00363 1.61874 1.08061 1.17608 1.37446 1.19809 0.95419 0.80707 0.97173 1.21191 1.34772 0.96856 1.01600 0.91552 1.24983 0.95253 0.97293 0.97132 1.69960 1.38545 1.11427 1.34059 0.86408 0.78178 0.79247 0.83437 1.19550 1.21114 1.20986 1.21978 1.02563 0.88592 0.95923 1.21436 0.79044 0.88125 0.81551 1.90800 1.33009 1.79559 1.27082 1.44378 1.56584 1.07128 1.27747 1.16195 0.80174 0.80875 0.83388 1.91120 1.39608 1.77934 1.29222 1.42681 1.63228 1.03899 1.23144 1.16901 0.99584 0.82159 0.92890 1.20575 1.04189 0.92393 0.98631 1.19761 1.02100 0.94686 0.93219 1.19789 1.05052 0.83807 0.94761 1.19476 1.02105 0.93231 0.84021 1.19985 1.03191 0.91398 0.97950 1.87418 1.89877 1.17417 1.27355 1.25639 0.99953 0.83594 0.80693 1.87369 1.77149 1.27147 1.30972 0.97364 0.90383 0.91852 0.98755 0.94987 0.92964 0.92255 0.87676 0.75549 0.75137 0.83935 0.84179 0.83169 0.89825 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.03 60.06 0.54 1.17 16 2 N -0.52 -11.41 4.49 -245.83 -1.10 -12.51 16 3 C 0.19 4.88 4.72 -4.98 -0.02 4.85 16 4 C -0.51 -14.20 8.46 -34.44 -0.29 -14.49 16 5 H 0.07 1.89 7.12 -52.49 -0.37 1.52 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.04 0.66 5.45 -4.97 -0.03 0.64 16 13 C 0.51 8.13 7.49 -10.99 -0.08 8.05 16 14 O -0.44 -9.29 12.71 -18.21 -0.23 -9.53 16 15 N -0.69 -7.43 5.24 -15.78 -0.08 -7.51 16 16 C 0.69 8.71 8.24 -86.93 -0.72 8.00 16 17 O -0.51 -9.23 12.43 -18.48 -0.23 -9.46 16 18 N -0.68 -5.46 5.35 -14.21 -0.08 -5.54 16 19 C 0.18 1.72 6.28 -83.64 -0.53 1.20 16 20 C -0.14 -0.95 9.96 -39.38 -0.39 -1.35 16 21 C -0.08 -0.61 10.05 -39.48 -0.40 -1.00 16 22 C 0.01 0.11 7.15 -39.08 -0.28 -0.17 16 23 C 0.06 0.68 7.15 -39.10 -0.28 0.40 16 24 C -0.10 -1.29 8.67 -39.28 -0.34 -1.63 16 25 O -0.30 -3.57 11.40 -45.70 -0.52 -4.09 16 26 C 0.21 1.61 8.89 101.05 0.90 2.50 16 27 O -0.31 -3.05 11.41 -46.03 -0.53 -3.57 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 30 H 0.06 1.30 5.88 -51.93 -0.31 1.00 16 31 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 32 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.11 1.47 7.93 -51.93 -0.41 1.06 16 36 H 0.41 2.22 8.72 -40.82 -0.36 1.86 16 37 H 0.41 1.42 8.84 -40.82 -0.36 1.06 16 38 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.15 2.20 6.41 -52.48 -0.34 1.86 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.13 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -39.02 358.85 -8.66 -47.68 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.00 Total: -1.74 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -2.01 Total: 9.61 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.53 Total: -51.04 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.51 Total: -26.65 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -39.02 -8.66 -47.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267056565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.294 kcal (2) G-P(sol) polarization free energy of solvation -39.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds