Wall clock time and date at job start Tue Mar 31 2020 18:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00669 * 2 1 4 4 C 1.50699 * 109.46992 * 293.95554 * 3 2 1 5 5 H 1.08001 * 120.00073 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00214 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99667 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00351 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46741 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46926 * 119.99710 * 8 6 4 11 11 H 1.48496 * 109.46935 * 239.99894 * 8 6 4 12 12 C 1.46908 * 110.99997 * 123.95633 * 2 1 3 13 13 C 1.50700 * 109.47093 * 66.03890 * 12 2 1 14 14 O 1.21238 * 119.99820 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99900 * 179.97438 * 13 12 2 16 16 C 1.34769 * 120.00084 * 180.02562 * 15 13 12 17 17 O 1.21548 * 120.00033 * 0.02562 * 16 15 13 18 18 N 1.34770 * 120.00380 * 180.02562 * 16 15 13 19 19 C 1.40121 * 120.00557 * 185.31947 * 18 16 15 20 20 C 1.38843 * 120.00252 * 213.31502 * 19 18 16 21 21 C 1.38182 * 120.06711 * 179.75177 * 20 19 18 22 22 C 1.38557 * 120.11865 * 0.44633 * 21 20 19 23 23 C 1.39280 * 119.94080 * 359.54920 * 22 21 20 24 24 C 1.38493 * 119.89559 * 0.22984 * 23 22 21 25 25 O 1.36503 * 108.63941 * 180.24968 * 23 22 21 26 26 C 1.43985 * 105.50462 * 342.69581 * 25 23 22 27 27 O 1.36603 * 131.44219 * 179.85832 * 22 21 20 28 28 H 1.09000 * 109.47210 * 296.05026 * 1 2 3 29 29 H 1.09005 * 109.46797 * 56.04757 * 1 2 3 30 30 H 1.09001 * 109.47619 * 176.04104 * 1 2 3 31 31 H 1.09000 * 109.46986 * 53.94874 * 3 2 1 32 32 H 1.08999 * 109.47860 * 173.95402 * 3 2 1 33 33 H 0.97005 * 119.99717 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46239 * 306.04622 * 12 2 1 35 35 H 1.08995 * 109.47151 * 186.04690 * 12 2 1 36 36 H 0.97001 * 120.00151 * 0.02562 * 15 13 12 37 37 H 0.97008 * 119.99872 * 5.31401 * 18 16 15 38 38 H 1.07998 * 119.96283 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.94262 * 180.33267 * 21 20 19 40 40 H 1.08005 * 120.01042 * 180.02562 * 24 23 22 41 41 H 1.08997 * 110.57335 * 268.59547 * 26 25 23 42 42 H 1.09000 * 110.57044 * 145.71344 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6371 2.0470 -1.2984 5 1 1.0747 1.5112 -2.0488 6 6 2.0270 3.3494 -1.5285 7 7 2.7114 4.0020 -0.6146 8 14 1.5833 4.1868 -3.1383 9 1 0.8159 3.2442 -3.9914 10 1 0.7554 5.3877 -2.8598 11 1 2.8252 4.5943 -3.8430 12 6 1.9954 -0.7661 1.1376 13 6 1.6368 -2.2205 0.9729 14 8 1.0054 -2.5831 0.0035 15 7 2.0187 -3.1182 1.9028 16 6 1.6984 -4.4189 1.7552 17 8 1.0655 -4.7825 0.7834 18 7 2.0799 -5.3166 2.6853 19 6 1.8451 -6.6825 2.4786 20 6 1.5665 -7.5101 3.5580 21 6 1.3298 -8.8563 3.3552 22 6 1.3788 -9.3858 2.0757 23 6 1.6580 -8.5580 0.9910 24 6 1.8906 -7.2080 1.1948 25 8 1.6434 -9.3109 -0.1475 26 6 1.7574 -10.6770 0.2929 27 8 1.1895 -10.6581 1.6159 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 1.5612 1.9273 0.8309 32 1 3.0798 1.3443 0.1082 33 1 2.9854 4.9184 -0.7763 34 1 1.5610 -0.3873 2.0627 35 1 3.0797 -0.6612 1.1757 36 1 2.5241 -2.8281 2.6782 37 1 2.5170 -5.0171 3.4979 38 1 1.5313 -7.1006 4.5567 39 1 1.1080 -9.4973 4.1957 40 1 2.1068 -6.5643 0.3550 41 1 2.8032 -10.9817 0.3294 42 1 1.1871 -11.3384 -0.3592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267056565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:45 Heat of formation + Delta-G solvation = -97.143708 kcal Electronic energy + Delta-G solvation = -27691.652424 eV Core-core repulsion = 23445.153129 eV Total energy + Delta-G solvation = -4246.499296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.18839 -42.45704 -40.43441 -38.75133 -37.58209 -37.29716 -35.99155 -35.24948 -34.62494 -31.57676 -30.58197 -29.84214 -28.77426 -26.85930 -26.30609 -24.76660 -24.12548 -23.16255 -22.10216 -21.63980 -20.20132 -19.53881 -18.89003 -18.57204 -18.21362 -18.02257 -17.48454 -17.27957 -16.69042 -16.42181 -16.13692 -16.05794 -15.68786 -15.50730 -15.38682 -15.11098 -14.99310 -14.64059 -14.32386 -14.07682 -14.01595 -13.78072 -13.69508 -13.30598 -12.83864 -12.70119 -12.63132 -12.60653 -12.44062 -12.34107 -12.04718 -11.84975 -11.39810 -11.27481 -10.96269 -10.69181 -10.59914 -9.79466 -9.03675 -8.83794 -8.20920 -6.28489 -0.04390 0.15283 0.98807 1.06790 1.40276 1.41974 1.55245 1.76016 2.06248 2.40425 2.47098 2.56724 2.77213 3.12084 3.35646 3.44766 3.69275 3.79103 3.99594 4.01998 4.07382 4.28444 4.30291 4.40515 4.47910 4.52382 4.54410 4.67371 4.86966 5.05152 5.08759 5.10191 5.16197 5.17643 5.20382 5.29659 5.46983 5.50365 5.66161 6.03426 6.08059 6.25073 6.41387 6.60917 6.85781 7.07277 7.18183 7.40341 8.89639 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.001886 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.141126 B =14841.576663 C =15490.458009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.548 5.548 3 C 0.210 3.790 4 C -0.527 4.527 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.041 3.959 13 C 0.523 3.477 14 O -0.499 6.499 15 N -0.665 5.665 16 C 0.692 3.308 17 O -0.567 6.567 18 N -0.650 5.650 19 C 0.167 3.833 20 C -0.111 4.111 21 C -0.072 4.072 22 C 0.002 3.998 23 C 0.028 3.972 24 C -0.131 4.131 25 O -0.336 6.336 26 C 0.205 3.795 27 O -0.320 6.320 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.064 0.936 31 H -0.020 1.020 32 H 0.021 0.979 33 H 0.265 0.735 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.438 0.562 37 H 0.438 0.562 38 H 0.190 0.810 39 H 0.175 0.825 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -27.421 17.282 32.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.273 5.273 3 C 0.084 3.916 4 C -0.565 4.565 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.202 1.202 12 C -0.090 4.090 13 C 0.310 3.690 14 O -0.368 6.368 15 N -0.334 5.334 16 C 0.393 3.607 17 O -0.441 6.441 18 N -0.303 5.303 19 C 0.072 3.928 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.043 4.043 23 C -0.017 4.017 24 C -0.153 4.153 25 O -0.253 6.253 26 C 0.094 3.906 27 O -0.236 6.236 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.083 0.917 31 H -0.003 1.003 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.146 0.854 36 H 0.278 0.722 37 H 0.280 0.720 38 H 0.207 0.793 39 H 0.192 0.808 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.801 -28.062 15.250 31.989 hybrid contribution 0.095 1.249 -0.082 1.255 sum 1.896 -26.813 15.167 30.864 Atomic orbital electron populations 1.22243 0.87600 1.00944 0.99998 1.61648 1.08461 1.16053 1.41168 1.19450 0.94499 0.82326 0.95296 1.21475 1.34883 0.97525 1.02646 0.92931 1.25759 0.95093 0.97881 1.00368 1.70037 1.39176 1.11881 1.35656 0.85431 0.78116 0.78185 0.79468 1.19734 1.20142 1.20201 1.22086 1.03911 0.87818 0.95164 1.21353 0.77887 0.88575 0.81230 1.90796 1.35899 1.80421 1.29715 1.43839 1.55857 1.06050 1.27673 1.16361 0.79653 0.81446 0.83255 1.91109 1.42241 1.78843 1.31868 1.42316 1.62204 1.02795 1.22946 1.17094 1.00330 0.82702 0.92674 1.21040 1.00962 0.91533 0.99557 1.20294 1.00359 0.95375 0.93063 1.20140 1.05171 0.83681 0.95289 1.19685 1.03625 0.93524 0.84876 1.19936 1.05407 0.91504 0.98409 1.87361 1.90270 1.19259 1.28388 1.26103 1.01858 0.82255 0.80341 1.87331 1.77562 1.26921 1.31816 0.95873 0.92835 0.91707 1.00255 0.96088 0.92568 0.88840 0.85391 0.72155 0.72034 0.79287 0.80803 0.86799 0.87572 0.82515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.71 9.03 127.69 1.15 2.86 16 2 N -0.55 -23.91 4.49 -931.65 -4.18 -28.09 16 3 C 0.21 10.67 4.72 85.56 0.40 11.08 16 4 C -0.53 -30.08 8.46 25.60 0.22 -29.87 16 5 H 0.05 3.08 7.12 -2.91 -0.02 3.06 16 6 C 0.01 0.43 5.46 84.65 0.46 0.89 16 7 N -0.93 -54.00 13.29 21.45 0.28 -53.72 16 8 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 C 0.04 1.25 5.45 85.56 0.47 1.72 16 13 C 0.52 16.22 7.49 87.66 0.66 16.88 16 14 O -0.50 -21.69 12.71 19.86 0.25 -21.44 16 15 N -0.67 -13.13 5.24 -440.53 -2.31 -15.44 16 16 C 0.69 16.96 8.24 179.06 1.48 18.43 16 17 O -0.57 -21.46 12.43 18.90 0.23 -21.23 16 18 N -0.65 -9.04 5.35 -317.16 -1.70 -10.74 16 19 C 0.17 2.96 6.28 38.09 0.24 3.20 16 20 C -0.11 -1.12 9.96 22.40 0.22 -0.89 16 21 C -0.07 -0.88 10.05 22.33 0.22 -0.66 16 22 C 0.00 0.04 7.15 22.60 0.16 0.20 16 23 C 0.03 0.70 7.15 22.58 0.16 0.86 16 24 C -0.13 -3.42 8.67 22.46 0.19 -3.22 16 25 O -0.34 -8.40 11.40 -76.08 -0.87 -9.27 16 26 C 0.20 3.05 8.89 113.37 1.01 4.05 16 27 O -0.32 -6.00 11.41 -77.27 -0.88 -6.88 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 2.47 6.76 -2.38 -0.02 2.46 16 30 H 0.06 2.73 5.88 -2.39 -0.01 2.72 16 31 H -0.02 -1.07 8.12 -2.39 -0.02 -1.09 16 32 H 0.02 1.10 7.93 -2.39 -0.02 1.09 16 33 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 34 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16 35 H 0.13 3.29 7.93 -2.39 -0.02 3.27 16 36 H 0.44 3.24 8.72 -92.71 -0.81 2.43 16 37 H 0.44 1.26 8.84 -92.70 -0.82 0.44 16 38 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 39 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.11 3.75 6.41 -2.91 -0.02 3.73 16 41 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -90.88 358.85 -0.62 -91.50 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -0.53 Total: 2.93 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 7.05 Total: 25.52 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -7.91 Total: -107.99 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -1.26 Total: -58.82 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -90.88 -0.62 -91.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267056565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.640 kcal (2) G-P(sol) polarization free energy of solvation -90.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds