Wall clock time and date at job start Tue Mar 31 2020 19:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34226 * 117.00340 * 2 1 4 4 O 1.20826 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00024 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.12890 * 300.51493 * 5 3 2 7 7 C 1.50617 * 109.30059 * 60.00396 * 5 3 2 8 8 C 1.38739 * 118.42007 * 317.89056 * 7 5 3 9 9 C 1.38012 * 120.37229 * 180.21984 * 8 7 5 10 10 C 1.38261 * 119.86972 * 359.76820 * 9 8 7 11 11 C 1.38034 * 119.82948 * 0.42857 * 10 9 8 12 12 C 1.37826 * 121.85094 * 137.97735 * 7 5 3 13 13 C 1.50724 * 121.65767 * 359.38947 * 12 7 5 14 14 C 1.52903 * 109.95913 * 16.98824 * 13 12 7 15 15 N 1.46627 * 109.29962 * 181.03943 * 5 3 2 16 16 C 1.46905 * 111.00205 * 63.69810 * 15 5 3 17 17 C 1.52992 * 109.47116 * 71.31592 * 16 15 5 18 18 C 1.53005 * 109.47334 * 185.15034 * 17 16 15 19 19 S 1.80995 * 109.47369 * 179.97438 * 18 17 16 20 20 C 1.76195 * 99.99975 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99754 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00175 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99924 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99793 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46891 * 90.00303 * 24 22 20 26 26 H 1.48496 * 109.47031 * 210.00559 * 24 22 20 27 27 H 1.48496 * 109.46999 * 330.00494 * 24 22 20 28 28 H 1.09004 * 109.47334 * 59.99432 * 1 2 3 29 29 H 1.08994 * 109.47352 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47069 * 299.99682 * 1 2 3 31 31 H 1.07997 * 119.81358 * 0.24822 * 8 7 5 32 32 H 1.07997 * 120.06477 * 180.02562 * 9 8 7 33 33 H 1.08001 * 120.08826 * 180.17578 * 10 9 8 34 34 H 1.07997 * 119.82796 * 179.73663 * 11 10 9 35 35 H 1.09000 * 109.38318 * 137.13346 * 13 12 7 36 36 H 1.09000 * 109.39200 * 256.83641 * 13 12 7 37 37 H 1.08999 * 109.62290 * 189.90598 * 14 13 12 38 38 H 1.09001 * 109.63647 * 69.32302 * 14 13 12 39 39 H 1.09006 * 109.46921 * 191.31435 * 16 15 5 40 40 H 1.09000 * 109.47120 * 311.30676 * 16 15 5 41 41 H 1.09003 * 109.46721 * 305.14434 * 17 16 15 42 42 H 1.08993 * 109.47668 * 65.14515 * 17 16 15 43 43 H 1.09007 * 109.46624 * 299.99897 * 18 17 16 44 44 H 1.08993 * 109.47167 * 59.99174 * 18 17 16 45 45 H 0.97002 * 119.99525 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9508 0.7710 0.8864 7 6 4.1002 0.5913 -1.2321 8 6 3.5260 -0.6100 -1.6219 9 6 3.9867 -1.2729 -2.7413 10 6 5.0231 -0.7354 -3.4820 11 6 5.5982 0.4576 -3.0931 12 6 5.1346 1.1255 -1.9697 13 6 5.7822 2.4332 -1.5925 14 6 5.4356 2.7894 -0.1465 15 7 3.9780 2.6818 0.0246 16 6 3.5442 3.3351 1.2669 17 6 4.3788 2.8109 2.4371 18 6 3.8434 3.3935 3.7467 19 16 4.8303 2.7727 5.1312 20 6 4.0191 3.5796 6.4711 21 1 3.1770 4.2284 6.2806 22 6 4.4630 3.3822 7.7713 23 7 3.8567 3.9845 8.7724 24 14 5.9200 2.2605 8.1006 25 1 7.1749 3.0533 8.0568 26 1 5.7734 1.6393 9.4415 27 1 5.9700 1.1971 7.0653 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 2.7136 -1.0286 -1.0464 32 1 3.5358 -2.2075 -3.0404 33 1 5.3845 -1.2498 -4.3602 34 1 6.4105 0.8753 -3.6693 35 1 6.8638 2.3438 -1.6939 36 1 5.4219 3.2200 -2.2553 37 1 5.7550 3.8096 0.0659 38 1 5.9359 2.0975 0.5311 39 1 3.6806 4.4129 1.1774 40 1 2.4913 3.1157 1.4443 41 1 4.3149 1.7232 2.4704 42 1 5.4185 3.1099 2.3046 43 1 3.9072 4.4811 3.7134 44 1 2.8037 3.0945 3.8792 45 1 4.1667 3.8462 9.6810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267870271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:36 Heat of formation + Delta-G solvation = -54.608166 kcal Electronic energy + Delta-G solvation = -26747.411369 eV Core-core repulsion = 23049.049767 eV Total energy + Delta-G solvation = -3698.361602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.35941 -39.71919 -38.08190 -36.39383 -34.01425 -33.07804 -32.45109 -31.11059 -29.65737 -28.13683 -26.66220 -25.70027 -24.59309 -23.53290 -22.73631 -21.45806 -21.24575 -19.31752 -17.94234 -17.52219 -17.23651 -16.87927 -16.07645 -16.03973 -15.84129 -15.04382 -14.98175 -14.74610 -14.60137 -14.05698 -13.98301 -13.60619 -13.55497 -13.46400 -12.92458 -12.77401 -12.68783 -12.38976 -12.35748 -12.20283 -11.89141 -11.75023 -11.56833 -11.24961 -11.15066 -11.05756 -10.85917 -10.78218 -10.62367 -10.37642 -10.19046 -9.86042 -9.06555 -9.02174 -8.82370 -8.63064 -8.37943 -6.96977 -6.29506 -4.02215 1.03309 1.16437 2.07135 2.39083 2.99095 3.28201 3.43238 3.52670 3.54672 3.67059 4.28569 4.30011 4.42953 4.57347 4.68970 4.76820 4.85469 4.89402 4.93610 4.95875 5.03542 5.07282 5.09550 5.12401 5.22653 5.30966 5.33821 5.38564 5.47295 5.51558 5.62870 5.68596 5.77594 5.80120 5.92027 5.96397 6.13053 6.19891 6.26005 6.30114 6.32744 6.35161 6.56177 6.71406 6.78148 6.87244 7.62203 7.94392 8.43810 9.16233 10.80054 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.002910 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.927118 B = 9619.023151 C =10318.578885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.472 3.528 4 O -0.479 6.479 5 C 0.132 3.868 6 H 0.096 0.904 7 C -0.082 4.082 8 C -0.111 4.111 9 C -0.126 4.126 10 C -0.113 4.113 11 C -0.125 4.125 12 C -0.054 4.054 13 C -0.080 4.080 14 C 0.051 3.949 15 N -0.511 5.511 16 C 0.046 3.954 17 C -0.140 4.140 18 C -0.078 4.078 19 S -0.219 6.219 20 C -0.501 4.501 21 H 0.088 0.912 22 C 0.091 3.909 23 N -0.882 5.882 24 Si 0.862 3.138 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.239 1.239 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -9.977 -26.054 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.364 6.364 5 C 0.022 3.978 6 H 0.113 0.887 7 C -0.082 4.082 8 C -0.129 4.129 9 C -0.144 4.144 10 C -0.131 4.131 11 C -0.143 4.143 12 C -0.054 4.054 13 C -0.117 4.117 14 C -0.076 4.076 15 N -0.235 5.235 16 C -0.082 4.082 17 C -0.180 4.180 18 C -0.227 4.227 19 S 0.009 5.991 20 C -0.649 4.649 21 H 0.106 0.894 22 C -0.117 4.117 23 N -0.518 5.518 24 Si 0.687 3.313 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.163 1.163 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.895 -10.084 -26.237 28.123 hybrid contribution -0.345 0.065 1.189 1.240 sum 0.550 -10.019 -25.049 26.984 Atomic orbital electron populations 1.23302 0.76198 1.03759 1.02791 1.86476 1.23544 1.33188 1.84270 1.23254 0.91138 0.81592 0.72701 1.90654 1.66441 1.35916 1.43391 1.19988 0.87916 0.91788 0.98100 0.88687 1.19071 0.97529 0.95656 0.95992 1.21595 1.00085 0.94186 0.97076 1.21059 0.97554 1.00156 0.95635 1.21149 0.96434 0.95960 0.99606 1.21072 1.00683 0.95791 0.96768 1.19569 0.95258 0.96048 0.94573 1.20644 0.99887 0.94313 0.96902 1.22243 0.86734 1.02659 0.96011 1.62309 1.13687 1.10396 1.37112 1.22583 1.00789 0.99678 0.85201 1.22063 1.00695 1.00784 0.94451 1.22951 1.01739 1.02552 0.95420 1.84122 1.47318 1.65643 1.02061 1.22115 1.19386 1.32485 0.90887 0.89378 1.24803 0.96704 0.95190 0.94984 1.69940 1.40454 1.41956 0.99485 0.86667 0.82869 0.82429 0.79338 1.19369 1.20090 1.16257 0.91863 0.88003 0.91583 0.83888 0.85894 0.86034 0.85877 0.89926 0.89491 0.88978 0.93127 0.89511 0.88982 0.91958 0.90970 0.91153 0.91464 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.03 7.63 -39.25 -0.30 -4.33 16 3 C 0.47 6.32 6.64 36.01 0.24 6.56 16 4 O -0.48 -7.55 13.99 -18.75 -0.26 -7.81 16 5 C 0.13 1.64 2.16 -70.20 -0.15 1.49 16 6 H 0.10 1.19 6.42 -51.93 -0.33 0.85 16 7 C -0.08 -0.94 5.47 -104.63 -0.57 -1.51 16 8 C -0.11 -1.15 8.99 -39.48 -0.36 -1.51 16 9 C -0.13 -1.11 10.05 -39.66 -0.40 -1.50 16 10 C -0.11 -0.94 10.05 -39.65 -0.40 -1.33 16 11 C -0.13 -1.10 9.66 -39.49 -0.38 -1.48 16 12 C -0.05 -0.56 5.77 -104.60 -0.60 -1.16 16 13 C -0.08 -0.72 5.95 -27.92 -0.17 -0.88 16 14 C 0.05 0.53 4.38 -3.73 -0.02 0.51 16 15 N -0.51 -6.43 4.41 -229.54 -1.01 -7.44 16 16 C 0.05 0.64 4.98 -3.83 -0.02 0.62 16 17 C -0.14 -2.14 4.38 -26.73 -0.12 -2.26 16 18 C -0.08 -1.52 5.67 37.16 0.21 -1.31 16 19 S -0.22 -5.35 19.41 -107.50 -2.09 -7.44 16 20 C -0.50 -14.65 10.04 30.94 0.31 -14.34 16 21 H 0.09 2.75 8.03 -52.48 -0.42 2.33 16 22 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 23 N -0.88 -26.91 13.97 55.49 0.78 -26.13 16 24 Si 0.86 21.62 27.74 -169.99 -4.71 16.91 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.14 1.41 5.26 -52.49 -0.28 1.14 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 38 H 0.05 0.54 7.20 -51.93 -0.37 0.17 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.09 1.43 5.58 -51.93 -0.29 1.14 16 41 H 0.06 0.96 6.47 -51.93 -0.34 0.62 16 42 H 0.07 1.06 6.96 -51.93 -0.36 0.70 16 43 H 0.07 1.37 8.14 -51.91 -0.42 0.95 16 44 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 45 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -33.44 369.89 -10.09 -43.52 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.61 Total: 1.31 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.45 Total: -14.16 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: -0.24 Total: -33.58 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.56 Total: -12.14 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -2.09 Total: -7.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.44 -10.09 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267870271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.084 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds