Wall clock time and date at job start Tue Mar 31 2020 19:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34226 * 117.00340 * 2 1 4 4 O 1.20826 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00024 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.12890 * 300.51493 * 5 3 2 7 7 C 1.50617 * 109.30059 * 60.00396 * 5 3 2 8 8 C 1.38739 * 118.42007 * 317.89056 * 7 5 3 9 9 C 1.38012 * 120.37229 * 180.21984 * 8 7 5 10 10 C 1.38261 * 119.86972 * 359.76820 * 9 8 7 11 11 C 1.38034 * 119.82948 * 0.42857 * 10 9 8 12 12 C 1.37826 * 121.85094 * 137.97735 * 7 5 3 13 13 C 1.50724 * 121.65767 * 359.38947 * 12 7 5 14 14 C 1.52903 * 109.95913 * 16.98824 * 13 12 7 15 15 N 1.46627 * 109.29962 * 181.03943 * 5 3 2 16 16 C 1.46905 * 111.00205 * 63.69810 * 15 5 3 17 17 C 1.52992 * 109.47116 * 71.31592 * 16 15 5 18 18 C 1.53005 * 109.47334 * 185.15034 * 17 16 15 19 19 S 1.80995 * 109.47369 * 179.97438 * 18 17 16 20 20 C 1.76195 * 99.99975 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99754 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00175 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99924 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99793 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46891 * 90.00303 * 24 22 20 26 26 H 1.48496 * 109.47031 * 210.00559 * 24 22 20 27 27 H 1.48496 * 109.46999 * 330.00494 * 24 22 20 28 28 H 1.09004 * 109.47334 * 59.99432 * 1 2 3 29 29 H 1.08994 * 109.47352 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47069 * 299.99682 * 1 2 3 31 31 H 1.07997 * 119.81358 * 0.24822 * 8 7 5 32 32 H 1.07997 * 120.06477 * 180.02562 * 9 8 7 33 33 H 1.08001 * 120.08826 * 180.17578 * 10 9 8 34 34 H 1.07997 * 119.82796 * 179.73663 * 11 10 9 35 35 H 1.09000 * 109.38318 * 137.13346 * 13 12 7 36 36 H 1.09000 * 109.39200 * 256.83641 * 13 12 7 37 37 H 1.08999 * 109.62290 * 189.90598 * 14 13 12 38 38 H 1.09001 * 109.63647 * 69.32302 * 14 13 12 39 39 H 1.09006 * 109.46921 * 191.31435 * 16 15 5 40 40 H 1.09000 * 109.47120 * 311.30676 * 16 15 5 41 41 H 1.09003 * 109.46721 * 305.14434 * 17 16 15 42 42 H 1.08993 * 109.47668 * 65.14515 * 17 16 15 43 43 H 1.09007 * 109.46624 * 299.99897 * 18 17 16 44 44 H 1.08993 * 109.47167 * 59.99174 * 18 17 16 45 45 H 0.97002 * 119.99525 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9508 0.7710 0.8864 7 6 4.1002 0.5913 -1.2321 8 6 3.5260 -0.6100 -1.6219 9 6 3.9867 -1.2729 -2.7413 10 6 5.0231 -0.7354 -3.4820 11 6 5.5982 0.4576 -3.0931 12 6 5.1346 1.1255 -1.9697 13 6 5.7822 2.4332 -1.5925 14 6 5.4356 2.7894 -0.1465 15 7 3.9780 2.6818 0.0246 16 6 3.5442 3.3351 1.2669 17 6 4.3788 2.8109 2.4371 18 6 3.8434 3.3935 3.7467 19 16 4.8303 2.7727 5.1312 20 6 4.0191 3.5796 6.4711 21 1 3.1770 4.2284 6.2806 22 6 4.4630 3.3822 7.7713 23 7 3.8567 3.9845 8.7724 24 14 5.9200 2.2605 8.1006 25 1 7.1749 3.0533 8.0568 26 1 5.7734 1.6393 9.4415 27 1 5.9700 1.1971 7.0653 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 2.7136 -1.0286 -1.0464 32 1 3.5358 -2.2075 -3.0404 33 1 5.3845 -1.2498 -4.3602 34 1 6.4105 0.8753 -3.6693 35 1 6.8638 2.3438 -1.6939 36 1 5.4219 3.2200 -2.2553 37 1 5.7550 3.8096 0.0659 38 1 5.9359 2.0975 0.5311 39 1 3.6806 4.4129 1.1774 40 1 2.4913 3.1157 1.4443 41 1 4.3149 1.7232 2.4704 42 1 5.4185 3.1099 2.3046 43 1 3.9072 4.4811 3.7134 44 1 2.8037 3.0945 3.8792 45 1 4.1667 3.8462 9.6810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267870271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:35 Heat of formation + Delta-G solvation = -74.075883 kcal Electronic energy + Delta-G solvation = -26748.255553 eV Core-core repulsion = 23049.049767 eV Total energy + Delta-G solvation = -3699.205786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27898 -40.55437 -38.96960 -37.39126 -35.05032 -34.71275 -33.90702 -32.11298 -30.39702 -28.92180 -28.07157 -27.55159 -25.56908 -24.52740 -23.53110 -22.53681 -22.11555 -20.22529 -19.63636 -18.86575 -18.17152 -17.80168 -17.15319 -16.97280 -16.88853 -16.68616 -16.14083 -16.01189 -15.62485 -15.15371 -14.92601 -14.85807 -14.56652 -14.52162 -14.33567 -13.78204 -13.68003 -13.53292 -13.39770 -13.11600 -13.09914 -13.03473 -12.85420 -12.69153 -12.53874 -12.23561 -12.02946 -11.84128 -11.75952 -11.68627 -11.51249 -11.27260 -11.18929 -10.65292 -9.81182 -9.51548 -9.38306 -9.03401 -8.54491 -6.26675 0.31711 0.48804 1.06068 1.09463 1.29987 1.45157 1.53340 1.70398 2.22362 2.63815 2.70524 2.83395 2.84120 3.46789 3.60543 3.80496 3.83155 3.92975 3.99639 4.06819 4.16168 4.20033 4.25630 4.29079 4.31648 4.39458 4.41648 4.57701 4.61514 4.66640 4.68329 4.81714 4.84214 4.88804 4.95470 5.01864 5.12999 5.15819 5.24650 5.26847 5.54729 5.59961 5.64321 5.67045 5.80188 5.89875 6.07451 6.12286 6.63547 6.89081 8.58902 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.002910 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.927118 B = 9619.023151 C =10318.578885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.511 6.511 5 C 0.132 3.868 6 H 0.090 0.910 7 C -0.104 4.104 8 C -0.125 4.125 9 C -0.130 4.130 10 C -0.113 4.113 11 C -0.128 4.128 12 C -0.069 4.069 13 C -0.075 4.075 14 C 0.046 3.954 15 N -0.515 5.515 16 C 0.058 3.942 17 C -0.124 4.124 18 C -0.067 4.067 19 S -0.215 6.215 20 C -0.524 4.524 21 H 0.048 0.952 22 C 0.037 3.963 23 N -0.923 5.923 24 Si 0.928 3.072 25 H -0.259 1.259 26 H -0.262 1.262 27 H -0.229 1.229 28 H 0.064 0.936 29 H 0.136 0.864 30 H 0.056 0.944 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -11.729 -28.330 30.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.313 3.687 4 O -0.399 6.399 5 C 0.022 3.978 6 H 0.108 0.892 7 C -0.105 4.105 8 C -0.143 4.143 9 C -0.148 4.148 10 C -0.131 4.131 11 C -0.146 4.146 12 C -0.069 4.069 13 C -0.112 4.112 14 C -0.080 4.080 15 N -0.239 5.239 16 C -0.072 4.072 17 C -0.164 4.164 18 C -0.216 4.216 19 S 0.013 5.987 20 C -0.672 4.672 21 H 0.066 0.934 22 C -0.168 4.168 23 N -0.561 5.561 24 Si 0.748 3.252 25 H -0.184 1.184 26 H -0.187 1.187 27 H -0.153 1.153 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.939 -11.851 -28.528 31.031 hybrid contribution -1.106 0.612 1.783 2.186 sum 1.833 -11.239 -26.744 29.068 Atomic orbital electron populations 1.23574 0.74797 1.05899 1.02389 1.86484 1.24939 1.32139 1.83680 1.23584 0.91708 0.81642 0.71783 1.90633 1.67194 1.36939 1.45100 1.20010 0.87292 0.91659 0.98792 0.89244 1.19125 0.98737 0.96419 0.96186 1.21689 1.00420 0.94293 0.97943 1.21362 0.97661 1.00806 0.94982 1.21530 0.95724 0.95762 1.00082 1.21387 1.01084 0.95834 0.96276 1.19815 0.95212 0.96746 0.95127 1.20659 1.01221 0.93766 0.95573 1.22387 0.85145 1.03226 0.97268 1.62337 1.15267 1.10669 1.35633 1.22383 0.99381 1.00116 0.85297 1.21964 1.01420 1.00542 0.92454 1.23013 1.00562 1.02601 0.95402 1.83749 1.47725 1.65431 1.01845 1.22338 1.18942 1.32566 0.93347 0.93376 1.25817 0.99682 0.96667 0.94598 1.70043 1.42288 1.43485 1.00249 0.85688 0.79032 0.80551 0.79900 1.18369 1.18673 1.15266 0.91766 0.84599 0.92529 0.84153 0.83823 0.83358 0.83539 0.87568 0.89291 0.87999 0.93396 0.88870 0.90860 0.91950 0.89663 0.91218 0.92489 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.02 7.63 -51.38 -0.39 -8.42 16 3 C 0.47 12.80 6.64 71.24 0.47 13.27 16 4 O -0.51 -16.59 13.99 21.96 0.31 -16.29 16 5 C 0.13 3.26 2.16 43.45 0.09 3.36 16 6 H 0.09 2.24 6.42 -2.38 -0.02 2.23 16 7 C -0.10 -2.28 5.47 -19.87 -0.11 -2.39 16 8 C -0.13 -2.47 8.99 22.34 0.20 -2.26 16 9 C -0.13 -2.00 10.05 22.22 0.22 -1.77 16 10 C -0.11 -1.52 10.05 22.23 0.22 -1.30 16 11 C -0.13 -1.87 9.66 22.33 0.22 -1.66 16 12 C -0.07 -1.28 5.77 -19.85 -0.11 -1.40 16 13 C -0.08 -1.17 5.95 29.82 0.18 -0.99 16 14 C 0.05 0.89 4.38 86.22 0.38 1.27 16 15 N -0.52 -12.65 4.41 -880.14 -3.88 -16.53 16 16 C 0.06 1.58 4.98 86.30 0.43 2.01 16 17 C -0.12 -3.69 4.38 30.59 0.13 -3.56 16 18 C -0.07 -2.63 5.67 71.98 0.41 -2.22 16 19 S -0.22 -10.46 19.41 -56.49 -1.10 -11.56 16 20 C -0.52 -31.47 10.04 67.96 0.68 -30.79 16 21 H 0.05 3.16 8.03 -2.91 -0.02 3.14 16 22 C 0.04 2.20 5.50 84.86 0.47 2.67 16 23 N -0.92 -57.49 13.97 21.65 0.30 -57.19 16 24 Si 0.93 44.33 27.74 68.60 1.90 46.23 16 25 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 27 H -0.23 -10.54 6.74 99.48 0.67 -9.87 16 28 H 0.06 1.07 8.13 -2.39 -0.02 1.06 16 29 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.14 2.70 5.26 -2.91 -0.02 2.69 16 32 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.73 8.03 -2.39 -0.02 1.71 16 38 H 0.05 0.95 7.20 -2.39 -0.02 0.93 16 39 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.07 2.33 5.58 -2.39 -0.01 2.32 16 41 H 0.06 1.88 6.47 -2.39 -0.02 1.87 16 42 H 0.08 2.35 6.96 -2.39 -0.02 2.34 16 43 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.06 2.35 8.14 -2.40 -0.02 2.33 16 45 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -73.70 369.89 3.18 -70.53 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.95 Total: 17.34 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 5.08 Total: -24.12 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -3.58 Total: -73.72 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.08 Total: -24.70 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -10.46 SS G_CDS: -1.10 Total: -11.56 kcal Total: -73.70 3.18 -70.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267870271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.549 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds