Wall clock time and date at job start Tue Mar 31 2020 18:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99600 * 2 1 4 4 H 1.08996 * 109.47630 * 30.00467 * 3 2 1 5 5 C 1.50705 * 109.47270 * 269.99573 * 3 2 1 6 6 O 1.21278 * 119.99751 * 344.00205 * 5 3 2 7 7 N 1.34775 * 119.99737 * 163.99812 * 5 3 2 8 8 C 1.46503 * 120.00323 * 356.56898 * 7 5 3 9 9 C 1.50696 * 109.46986 * 94.70606 * 8 7 5 10 10 H 1.08004 * 120.00290 * 358.71673 * 9 8 7 11 11 C 1.37879 * 120.00258 * 178.71227 * 9 8 7 12 12 N 1.31512 * 120.00200 * 181.31677 * 11 9 8 13 13 Si 1.86797 * 119.99561 * 1.31087 * 11 9 8 14 14 H 1.48506 * 109.47150 * 90.00091 * 13 11 9 15 15 H 1.48506 * 109.47261 * 209.99793 * 13 11 9 16 16 H 1.48500 * 109.47550 * 330.00204 * 13 11 9 17 17 C 1.46496 * 119.99834 * 176.57423 * 7 5 3 18 18 C 1.53003 * 109.47582 * 93.86548 * 17 7 5 19 19 F 1.39893 * 109.46811 * 65.11604 * 18 17 7 20 20 F 1.39900 * 109.47002 * 185.11576 * 18 17 7 21 21 F 1.39901 * 109.46911 * 305.11638 * 18 17 7 22 22 C 1.50702 * 109.46808 * 149.99952 * 3 2 1 23 23 C 1.39875 * 126.03739 * 49.35425 * 22 3 2 24 24 N 1.30837 * 108.19816 * 179.73560 * 23 22 3 25 25 N 1.40083 * 108.20901 * 0.02562 * 24 23 22 26 26 C 1.46503 * 126.03643 * 179.97438 * 25 24 23 27 27 C 1.34945 * 107.92540 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.47395 * 299.99937 * 1 2 3 29 29 H 1.09005 * 109.47334 * 59.99805 * 1 2 3 30 30 H 1.09001 * 109.47367 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46933 * 214.70851 * 8 7 5 32 32 H 1.09002 * 109.46835 * 334.71108 * 8 7 5 33 33 H 0.96994 * 119.99797 * 180.02562 * 12 11 9 34 34 H 1.09006 * 109.47391 * 213.86813 * 17 7 5 35 35 H 1.09008 * 109.47144 * 333.86111 * 17 7 5 36 36 H 1.07994 * 125.89746 * 359.71554 * 23 22 3 37 37 H 1.09001 * 109.46816 * 96.11412 * 26 25 24 38 38 H 1.09001 * 109.46805 * 216.11016 * 26 25 24 39 39 H 1.08994 * 109.47608 * 336.11310 * 26 25 24 40 40 H 1.07999 * 126.12863 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 2.1741 0.9617 -2.3291 7 7 2.4421 3.0669 -1.6821 8 6 2.4163 4.0477 -0.5942 9 6 3.8169 4.2696 -0.0845 10 1 4.6411 3.7183 -0.5127 11 6 4.0465 5.1764 0.9284 12 7 5.2720 5.3890 1.3555 13 14 2.6167 6.1032 1.6939 14 1 2.0843 5.3294 2.8442 15 1 3.0833 7.4320 2.1648 16 1 1.5456 6.2848 0.6815 17 6 2.7153 3.5018 -3.0541 18 6 1.4105 3.9479 -3.7171 19 9 0.9190 5.0824 -3.0626 20 9 1.6509 4.2524 -5.0613 21 9 0.4688 2.9167 -3.6338 22 6 3.3385 1.2639 0.7104 23 6 4.3677 0.3457 0.4779 24 7 5.3601 0.6322 1.2810 25 7 4.9931 1.7431 2.0514 26 6 5.8151 2.3903 3.0769 27 6 3.7486 2.1117 1.6821 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.0106 4.9895 -0.9637 32 1 1.7896 3.6751 0.2161 33 1 5.4334 6.0267 2.0683 34 1 3.4180 4.3350 -3.0381 35 1 3.1455 2.6746 -3.6187 36 1 4.3466 -0.4607 -0.2401 37 1 6.3333 3.2447 2.6413 38 1 5.1773 2.7297 3.8930 39 1 6.5464 1.6782 3.4592 40 1 3.1815 2.9359 2.0890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282654138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:46 Heat of formation + Delta-G solvation = -135.841519 kcal Electronic energy + Delta-G solvation = -31662.162223 eV Core-core repulsion = 26872.128124 eV Total energy + Delta-G solvation = -4790.034099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.75335 -47.30451 -47.20732 -40.69356 -39.34672 -37.08026 -35.37430 -32.87640 -32.70329 -31.03543 -29.50978 -28.12403 -27.20675 -25.90739 -24.92200 -23.01089 -22.68837 -20.42492 -20.14306 -19.00011 -18.23390 -18.13785 -17.51820 -16.93289 -16.72663 -16.35821 -16.02202 -15.24613 -14.65352 -14.63112 -14.47696 -14.27427 -14.13465 -13.96575 -13.70712 -13.64591 -13.56235 -13.41380 -13.39400 -12.91433 -12.60968 -12.52291 -12.32846 -12.04269 -11.97980 -11.93711 -11.74350 -11.50024 -11.21782 -11.02697 -10.84305 -10.49315 -10.20668 -9.90322 -9.79862 -9.05736 -8.86192 -8.58468 -8.16899 -7.68604 -6.39708 -4.37113 2.64580 2.87647 2.96485 3.05902 3.11373 3.14630 3.27534 3.38559 3.49080 4.06678 4.20542 4.24060 4.39022 4.64289 4.86178 5.08671 5.19250 5.29048 5.51479 5.54148 5.61009 5.70461 5.71214 5.73608 5.76723 5.86260 5.93444 6.13448 6.22823 6.41162 6.51478 6.66383 6.91193 7.22291 7.30018 7.35150 7.71583 7.80638 8.19094 8.41679 8.62477 8.71745 9.17038 10.70834 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.006570 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.829185 B = 4261.009067 C = 5758.902203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.171 3.829 4 H 0.083 0.917 5 C 0.508 3.492 6 O -0.536 6.536 7 N -0.587 5.587 8 C 0.200 3.800 9 C -0.524 4.524 10 H 0.084 0.916 11 C 0.081 3.919 12 N -0.880 5.880 13 Si 0.849 3.151 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.261 1.261 17 C 0.082 3.918 18 C 0.431 3.569 19 F -0.183 7.183 20 F -0.188 7.188 21 F -0.180 7.180 22 C -0.259 4.259 23 C 0.076 3.924 24 N -0.317 5.317 25 N -0.360 5.360 26 C 0.107 3.893 27 C 0.153 3.847 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.266 0.734 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.173 0.827 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 -2.625 0.316 6.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C 0.109 3.891 4 H 0.101 0.899 5 C 0.296 3.704 6 O -0.413 6.413 7 N -0.319 5.319 8 C 0.080 3.920 9 C -0.563 4.563 10 H 0.102 0.898 11 C -0.123 4.123 12 N -0.517 5.517 13 Si 0.675 3.325 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.185 1.185 17 C -0.045 4.045 18 C 0.375 3.625 19 F -0.165 7.165 20 F -0.170 7.170 21 F -0.162 7.162 22 C -0.271 4.271 23 C -0.110 4.110 24 N -0.138 5.138 25 N -0.140 5.140 26 C -0.034 4.034 27 C 0.004 3.996 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.190 0.810 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.825 -3.367 0.506 5.905 hybrid contribution -1.911 1.571 0.031 2.474 sum -6.736 -1.796 0.537 6.992 Atomic orbital electron populations 1.22810 0.81568 1.02655 0.99735 1.88003 1.19047 1.25924 1.94371 1.19768 0.93192 0.85352 0.90806 0.89947 1.21318 0.75590 0.81557 0.91952 1.90636 1.50715 1.53040 1.46914 1.47795 1.69543 1.08093 1.06514 1.20080 0.99008 0.87895 0.85046 1.21290 0.92091 1.23616 1.19312 0.89825 1.24774 0.95178 0.95839 0.96545 1.69871 1.18998 1.34704 1.28129 0.87271 0.83832 0.80825 0.80536 1.19756 1.20617 1.18491 1.22407 0.91343 1.04841 0.85866 1.21589 0.89024 0.75156 0.76688 1.93170 1.89718 1.52759 1.80842 1.93147 1.94503 1.93410 1.35936 1.93185 1.68223 1.58834 1.95951 1.18849 0.97324 1.04301 1.06643 1.23423 0.90506 0.99024 0.98027 1.77243 1.23280 1.03574 1.09751 1.48106 1.12142 1.23381 1.30335 1.21808 0.95014 0.98116 0.88492 1.21900 0.86707 0.95993 0.94954 0.94191 0.94111 0.89596 0.93955 0.95110 0.92383 0.85635 0.86256 0.80974 0.88848 0.90832 0.90544 0.81705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.81 101.05 1.09 1.49 16 2 O -0.36 -6.30 9.83 -54.61 -0.54 -6.83 16 3 C 0.17 3.12 2.19 -29.03 -0.06 3.06 16 4 H 0.08 1.38 6.03 -51.93 -0.31 1.07 16 5 C 0.51 10.05 6.51 -10.98 -0.07 9.97 16 6 O -0.54 -11.62 15.77 -13.82 -0.22 -11.84 16 7 N -0.59 -11.18 2.35 -175.05 -0.41 -11.59 16 8 C 0.20 3.96 3.69 -5.19 -0.02 3.94 16 9 C -0.52 -11.74 6.56 -34.44 -0.23 -11.97 16 10 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 11 C 0.08 1.82 4.54 -17.82 -0.08 1.74 16 12 N -0.88 -21.23 13.81 55.43 0.77 -20.47 16 13 Si 0.85 17.12 27.24 -169.99 -4.63 12.49 16 14 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.26 -5.19 6.52 56.52 0.37 -4.82 16 17 C 0.08 1.39 5.47 -4.04 -0.02 1.37 16 18 C 0.43 7.08 3.30 37.16 0.12 7.21 16 19 F -0.18 -3.12 16.00 2.25 0.04 -3.08 16 20 F -0.19 -2.90 17.32 2.25 0.04 -2.86 16 21 F -0.18 -3.21 16.43 2.25 0.04 -3.17 16 22 C -0.26 -4.99 4.33 -105.05 -0.45 -5.44 16 23 C 0.08 1.50 11.85 -17.36 -0.21 1.30 16 24 N -0.32 -6.42 12.58 30.62 0.39 -6.04 16 25 N -0.36 -6.88 4.01 -68.16 -0.27 -7.15 16 26 C 0.11 1.70 11.47 59.85 0.69 2.39 16 27 C 0.15 2.93 8.29 -17.22 -0.14 2.79 16 28 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.85 5.93 -51.93 -0.31 0.54 16 32 H 0.03 0.59 5.34 -51.93 -0.28 0.31 16 33 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 34 H 0.13 1.99 8.10 -51.93 -0.42 1.57 16 35 H 0.12 1.97 7.36 -51.92 -0.38 1.59 16 36 H 0.17 3.16 8.06 -52.49 -0.42 2.73 16 37 H 0.09 1.67 8.00 -51.93 -0.42 1.26 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.17 3.07 6.91 -52.49 -0.36 2.70 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -27.73 347.83 -3.55 -31.29 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.60 Total: 6.18 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 0.61 Total: 17.84 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.47 Total: -45.25 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.75 Total: -18.67 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 0.11 Total: -9.11 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -4.63 Total: 12.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.73 -3.55 -31.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282654138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.555 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds