Wall clock time and date at job start Tue Mar 31 2020 18:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99600 * 2 1 4 4 H 1.08996 * 109.47630 * 30.00467 * 3 2 1 5 5 C 1.50705 * 109.47270 * 269.99573 * 3 2 1 6 6 O 1.21278 * 119.99751 * 344.00205 * 5 3 2 7 7 N 1.34775 * 119.99737 * 163.99812 * 5 3 2 8 8 C 1.46503 * 120.00323 * 356.56898 * 7 5 3 9 9 C 1.50696 * 109.46986 * 94.70606 * 8 7 5 10 10 H 1.08004 * 120.00290 * 358.71673 * 9 8 7 11 11 C 1.37879 * 120.00258 * 178.71227 * 9 8 7 12 12 N 1.31512 * 120.00200 * 181.31677 * 11 9 8 13 13 Si 1.86797 * 119.99561 * 1.31087 * 11 9 8 14 14 H 1.48506 * 109.47150 * 90.00091 * 13 11 9 15 15 H 1.48506 * 109.47261 * 209.99793 * 13 11 9 16 16 H 1.48500 * 109.47550 * 330.00204 * 13 11 9 17 17 C 1.46496 * 119.99834 * 176.57423 * 7 5 3 18 18 C 1.53003 * 109.47582 * 93.86548 * 17 7 5 19 19 F 1.39893 * 109.46811 * 65.11604 * 18 17 7 20 20 F 1.39900 * 109.47002 * 185.11576 * 18 17 7 21 21 F 1.39901 * 109.46911 * 305.11638 * 18 17 7 22 22 C 1.50702 * 109.46808 * 149.99952 * 3 2 1 23 23 C 1.39875 * 126.03739 * 49.35425 * 22 3 2 24 24 N 1.30837 * 108.19816 * 179.73560 * 23 22 3 25 25 N 1.40083 * 108.20901 * 0.02562 * 24 23 22 26 26 C 1.46503 * 126.03643 * 179.97438 * 25 24 23 27 27 C 1.34945 * 107.92540 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.47395 * 299.99937 * 1 2 3 29 29 H 1.09005 * 109.47334 * 59.99805 * 1 2 3 30 30 H 1.09001 * 109.47367 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46933 * 214.70851 * 8 7 5 32 32 H 1.09002 * 109.46835 * 334.71108 * 8 7 5 33 33 H 0.96994 * 119.99797 * 180.02562 * 12 11 9 34 34 H 1.09006 * 109.47391 * 213.86813 * 17 7 5 35 35 H 1.09008 * 109.47144 * 333.86111 * 17 7 5 36 36 H 1.07994 * 125.89746 * 359.71554 * 23 22 3 37 37 H 1.09001 * 109.46816 * 96.11412 * 26 25 24 38 38 H 1.09001 * 109.46805 * 216.11016 * 26 25 24 39 39 H 1.08994 * 109.47608 * 336.11310 * 26 25 24 40 40 H 1.07999 * 126.12863 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 2.1741 0.9617 -2.3291 7 7 2.4421 3.0669 -1.6821 8 6 2.4163 4.0477 -0.5942 9 6 3.8169 4.2696 -0.0845 10 1 4.6411 3.7183 -0.5127 11 6 4.0465 5.1764 0.9284 12 7 5.2720 5.3890 1.3555 13 14 2.6167 6.1032 1.6939 14 1 2.0843 5.3294 2.8442 15 1 3.0833 7.4320 2.1648 16 1 1.5456 6.2848 0.6815 17 6 2.7153 3.5018 -3.0541 18 6 1.4105 3.9479 -3.7171 19 9 0.9190 5.0824 -3.0626 20 9 1.6509 4.2524 -5.0613 21 9 0.4688 2.9167 -3.6338 22 6 3.3385 1.2639 0.7104 23 6 4.3677 0.3457 0.4779 24 7 5.3601 0.6322 1.2810 25 7 4.9931 1.7431 2.0514 26 6 5.8151 2.3903 3.0769 27 6 3.7486 2.1117 1.6821 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.0106 4.9895 -0.9637 32 1 1.7896 3.6751 0.2161 33 1 5.4334 6.0267 2.0683 34 1 3.4180 4.3350 -3.0381 35 1 3.1455 2.6746 -3.6187 36 1 4.3466 -0.4607 -0.2401 37 1 6.3333 3.2447 2.6413 38 1 5.1773 2.7297 3.8930 39 1 6.5464 1.6782 3.4592 40 1 3.1815 2.9359 2.0890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282654138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:45 Heat of formation + Delta-G solvation = -152.084705 kcal Electronic energy + Delta-G solvation = -31662.866581 eV Core-core repulsion = 26872.128124 eV Total energy + Delta-G solvation = -4790.738457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.09143 -48.61500 -48.57368 -42.17653 -40.85386 -38.41676 -36.95601 -34.58335 -34.11389 -32.50467 -31.00329 -29.67210 -28.60006 -27.11876 -26.32139 -24.55573 -24.19141 -21.90731 -21.62948 -20.44953 -19.59757 -19.50548 -19.11391 -18.44238 -18.21111 -17.80317 -17.42649 -16.64853 -16.18519 -16.01004 -15.98666 -15.62492 -15.47778 -15.32626 -15.06544 -15.05316 -15.01586 -14.76673 -14.73879 -14.48192 -14.08368 -13.90119 -13.79057 -13.46319 -13.38118 -13.35956 -13.12740 -12.82612 -12.79877 -12.46339 -12.23385 -12.06945 -11.64103 -11.54926 -11.37598 -10.69634 -10.36833 -10.10045 -9.73899 -9.17910 -8.14973 -6.16487 1.14994 1.39370 1.42177 1.50772 1.54283 1.64547 1.87041 1.95611 2.02871 2.39643 2.84711 2.92854 3.05127 3.13901 3.30417 3.64073 3.84970 3.91638 4.16069 4.24599 4.32527 4.37009 4.44564 4.53699 4.56944 4.58853 4.61529 4.83286 4.87746 4.89813 5.04337 5.17481 5.36897 5.51311 5.80575 6.05943 6.20924 6.30712 6.49659 6.83162 6.91027 7.11743 7.40199 8.97726 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.006570 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.829185 B = 4261.009067 C = 5758.902203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.374 6.374 3 C 0.174 3.826 4 H 0.100 0.900 5 C 0.505 3.495 6 O -0.560 6.560 7 N -0.590 5.590 8 C 0.206 3.794 9 C -0.513 4.513 10 H 0.037 0.963 11 C 0.050 3.950 12 N -0.912 5.912 13 Si 0.897 3.103 14 H -0.250 1.250 15 H -0.293 1.293 16 H -0.252 1.252 17 C 0.078 3.922 18 C 0.441 3.559 19 F -0.184 7.184 20 F -0.180 7.180 21 F -0.187 7.187 22 C -0.263 4.263 23 C 0.065 3.935 24 N -0.337 5.337 25 N -0.364 5.364 26 C 0.105 3.895 27 C 0.150 3.850 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.107 0.893 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.266 0.734 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.178 0.822 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 -2.273 1.119 8.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.291 6.291 3 C 0.112 3.888 4 H 0.118 0.882 5 C 0.293 3.707 6 O -0.438 6.438 7 N -0.322 5.322 8 C 0.086 3.914 9 C -0.552 4.552 10 H 0.056 0.944 11 C -0.152 4.152 12 N -0.551 5.551 13 Si 0.721 3.279 14 H -0.174 1.174 15 H -0.220 1.220 16 H -0.176 1.176 17 C -0.048 4.048 18 C 0.385 3.615 19 F -0.166 7.166 20 F -0.162 7.162 21 F -0.169 7.169 22 C -0.275 4.275 23 C -0.121 4.121 24 N -0.159 5.159 25 N -0.144 5.144 26 C -0.036 4.036 27 C 0.000 4.000 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.125 0.875 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.195 0.805 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.566 -3.021 1.303 7.344 hybrid contribution -1.313 1.448 -0.269 1.973 sum -7.879 -1.574 1.034 8.101 Atomic orbital electron populations 1.23065 0.79513 1.04419 1.00439 1.87979 1.21317 1.25490 1.94357 1.19737 0.93136 0.86192 0.89725 0.88206 1.21678 0.75026 0.81455 0.92493 1.90616 1.51881 1.53548 1.47772 1.47824 1.69238 1.07947 1.07162 1.19978 0.97536 0.88284 0.85650 1.21066 0.91992 1.22988 1.19157 0.94446 1.25240 0.96886 0.96325 0.96744 1.69990 1.20858 1.35428 1.28775 0.86501 0.81481 0.79253 0.80672 1.17449 1.21979 1.17597 1.22516 0.91915 1.05260 0.85104 1.21338 0.88389 0.74879 0.76921 1.93167 1.89702 1.52766 1.80944 1.93165 1.94419 1.93313 1.35283 1.93174 1.68460 1.59224 1.96018 1.19023 0.97806 1.04053 1.06665 1.23609 0.90745 0.99517 0.98205 1.77182 1.23812 1.04493 1.10396 1.48382 1.12423 1.23077 1.30523 1.21966 0.95684 0.97640 0.88279 1.22041 0.86858 0.96025 0.95058 0.91907 0.94868 0.87455 0.93586 0.93478 0.92430 0.84818 0.86107 0.80467 0.91159 0.88192 0.88623 0.81004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 10.81 113.37 1.23 1.77 16 2 O -0.37 -12.64 9.83 -130.45 -1.28 -13.92 16 3 C 0.17 6.11 2.19 29.10 0.06 6.17 16 4 H 0.10 3.09 6.03 -2.39 -0.01 3.07 16 5 C 0.50 19.51 6.51 87.66 0.57 20.08 16 6 O -0.56 -23.98 15.77 15.51 0.24 -23.74 16 7 N -0.59 -21.86 2.35 -826.14 -1.94 -23.80 16 8 C 0.21 7.80 3.69 85.63 0.32 8.12 16 9 C -0.51 -22.70 6.56 25.60 0.17 -22.53 16 10 H 0.04 2.01 8.06 -2.91 -0.02 1.99 16 11 C 0.05 2.19 4.54 84.66 0.38 2.58 16 12 N -0.91 -43.98 13.81 21.45 0.30 -43.68 16 13 Si 0.90 33.42 27.24 68.60 1.87 35.29 16 14 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 15 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.25 -9.03 6.52 99.48 0.65 -8.39 16 17 C 0.08 2.58 5.47 86.38 0.47 3.05 16 18 C 0.44 13.82 3.30 71.98 0.24 14.06 16 19 F -0.18 -5.90 16.00 44.97 0.72 -5.18 16 20 F -0.18 -5.27 17.32 44.97 0.78 -4.49 16 21 F -0.19 -6.40 16.43 44.97 0.74 -5.66 16 22 C -0.26 -9.94 4.33 -20.14 -0.09 -10.02 16 23 C 0.06 2.55 11.85 85.24 1.01 3.56 16 24 N -0.34 -13.65 12.58 -57.02 -0.72 -14.36 16 25 N -0.36 -13.72 4.01 -369.56 -1.48 -15.20 16 26 C 0.10 3.24 11.47 127.77 1.47 4.70 16 27 C 0.15 5.56 8.29 83.54 0.69 6.25 16 28 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 29 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 1.73 5.93 -2.39 -0.01 1.72 16 32 H 0.05 1.65 5.34 -2.39 -0.01 1.64 16 33 H 0.27 12.25 8.31 -92.71 -0.77 11.48 16 34 H 0.13 4.15 8.10 -2.38 -0.02 4.13 16 35 H 0.12 3.95 7.36 -2.38 -0.02 3.93 16 36 H 0.18 6.58 8.06 -2.91 -0.02 6.55 16 37 H 0.07 2.53 8.00 -2.39 -0.02 2.51 16 38 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.17 6.06 6.91 -2.91 -0.02 6.04 16 Total: -1.00 -58.42 347.83 6.77 -51.64 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 1.03 Total: 25.32 kcal Atomic # 6 Polarization: 31.27 SS G_CDS: 6.52 Total: 37.79 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -3.84 Total: -97.05 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.04 Total: -37.66 kcal Atomic # 9 Polarization: -17.57 SS G_CDS: 2.24 Total: -15.33 kcal Atomic # 14 Polarization: 33.42 SS G_CDS: 1.87 Total: 35.29 kcal Total: -58.42 6.77 -51.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282654138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.443 kcal (2) G-P(sol) polarization free energy of solvation -58.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds