Wall clock time and date at job start Tue Mar 31 2020 18:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00058 * 2 1 4 4 H 1.09010 * 109.46954 * 29.99586 * 3 2 1 5 5 C 1.50696 * 109.47460 * 149.99394 * 3 2 1 6 6 O 1.21282 * 119.99940 * 16.92300 * 5 3 2 7 7 N 1.34779 * 120.00219 * 196.91706 * 5 3 2 8 8 C 1.46500 * 119.99983 * 355.66174 * 7 5 3 9 9 C 1.50706 * 109.46883 * 264.28279 * 8 7 5 10 10 H 1.07994 * 119.99750 * 3.38430 * 9 8 7 11 11 C 1.37870 * 119.99832 * 183.38765 * 9 8 7 12 12 N 1.31515 * 120.00117 * 7.24683 * 11 9 8 13 13 Si 1.86796 * 120.00024 * 187.25287 * 11 9 8 14 14 H 1.48505 * 109.47258 * 4.43143 * 13 11 9 15 15 H 1.48498 * 109.47549 * 124.43000 * 13 11 9 16 16 H 1.48499 * 109.47008 * 244.43379 * 13 11 9 17 17 C 1.46496 * 119.99929 * 175.65340 * 7 5 3 18 18 C 1.53005 * 109.47602 * 266.56822 * 17 7 5 19 19 F 1.39897 * 109.46708 * 64.54366 * 18 17 7 20 20 F 1.39900 * 109.47154 * 184.54216 * 18 17 7 21 21 F 1.39900 * 109.46950 * 304.54335 * 18 17 7 22 22 C 1.50702 * 109.47474 * 270.00005 * 3 2 1 23 23 C 1.39875 * 126.03283 * 315.10213 * 22 3 2 24 24 N 1.30838 * 108.19671 * 179.81688 * 23 22 3 25 25 N 1.40080 * 108.20982 * 0.43826 * 24 23 22 26 26 C 1.46494 * 126.03980 * 179.73792 * 25 24 23 27 27 C 1.34955 * 107.92210 * 359.71711 * 25 24 23 28 28 H 1.08993 * 109.47525 * 300.00514 * 1 2 3 29 29 H 1.09005 * 109.46786 * 60.00197 * 1 2 3 30 30 H 1.08997 * 109.47063 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47108 * 24.28155 * 8 7 5 32 32 H 1.08994 * 109.47020 * 144.28522 * 8 7 5 33 33 H 0.96999 * 120.00145 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.47387 * 26.57096 * 17 7 5 35 35 H 1.09004 * 109.47393 * 146.56680 * 17 7 5 36 36 H 1.08001 * 125.90030 * 359.97438 * 23 22 3 37 37 H 1.08994 * 109.47470 * 272.76418 * 26 25 24 38 38 H 1.09007 * 109.46971 * 32.76268 * 26 25 24 39 39 H 1.09007 * 109.47348 * 152.75983 * 26 25 24 40 40 H 1.08002 * 126.12308 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3385 1.2640 0.7105 6 8 3.8924 0.2016 0.8992 7 7 3.9111 2.4074 1.1362 8 6 3.2903 3.6974 0.8253 9 6 3.9294 4.2778 -0.4100 10 1 4.6805 3.7152 -0.9443 11 6 3.5552 5.5269 -0.8577 12 7 2.7488 6.2710 -0.1327 13 14 4.1933 6.1624 -2.4942 14 1 4.9899 5.1010 -3.1608 15 1 3.0471 6.5384 -3.3603 16 1 5.0504 7.3528 -2.2628 17 6 5.1542 2.3603 1.9099 18 6 4.8253 2.3575 3.4042 19 9 4.1332 1.1854 3.7270 20 9 6.0118 2.4170 4.1430 21 9 4.0301 3.4675 3.7086 22 6 2.2146 1.7644 -1.4208 23 6 2.7483 1.0002 -2.4637 24 7 2.7640 1.7378 -3.5442 25 7 2.2494 2.9997 -3.2203 26 6 2.0959 4.1299 -4.1397 27 6 1.9196 2.9903 -1.9117 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2241 3.5546 0.6498 32 1 3.4324 4.3802 1.6629 33 1 2.4852 7.1497 -0.4478 34 1 5.7052 1.4542 1.6575 35 1 5.7627 3.2332 1.6735 36 1 3.0864 -0.0229 -2.3903 37 1 3.0207 4.7062 -4.1646 38 1 1.8730 3.7572 -5.1395 39 1 1.2797 4.7671 -3.7991 40 1 1.4965 3.8140 -1.3558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282654144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:49 Heat of formation + Delta-G solvation = -136.923210 kcal Electronic energy + Delta-G solvation = -31611.240968 eV Core-core repulsion = 26821.159963 eV Total energy + Delta-G solvation = -4790.081005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.64823 -47.20327 -47.09505 -40.81868 -39.23486 -37.12534 -35.29303 -32.96461 -32.86741 -31.05866 -29.26458 -28.01031 -26.96281 -26.17426 -24.82027 -23.24710 -22.80048 -20.55865 -20.23942 -18.99335 -18.11960 -18.01544 -17.35128 -17.04458 -16.36214 -16.22774 -15.98409 -15.25893 -15.09062 -14.79549 -14.57692 -14.17139 -14.00649 -13.87865 -13.81620 -13.63336 -13.58831 -13.30861 -13.28290 -12.81628 -12.70792 -12.57968 -12.26593 -12.14020 -12.00331 -11.89016 -11.75287 -11.38935 -11.13437 -10.97442 -10.73235 -10.42159 -10.21221 -9.97929 -9.58396 -9.17296 -8.89815 -8.64770 -8.11821 -7.80830 -6.41086 -4.42786 2.50800 2.89867 2.91146 3.02159 3.10656 3.13445 3.19488 3.35233 3.51193 4.08718 4.28463 4.32286 4.49676 4.77672 4.89433 4.96630 5.25374 5.31728 5.42158 5.50264 5.58571 5.61536 5.66261 5.69496 5.74310 5.77462 5.85284 5.89624 6.34528 6.41683 6.52448 6.90693 7.17107 7.20935 7.41533 7.54610 7.57331 7.81508 8.00240 8.26555 8.58367 8.76333 9.19420 10.64855 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.010785 B = 0.006434 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.653135 B = 4351.040175 C = 6105.754842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.360 6.360 3 C 0.168 3.832 4 H 0.086 0.914 5 C 0.531 3.469 6 O -0.536 6.536 7 N -0.593 5.593 8 C 0.229 3.771 9 C -0.520 4.520 10 H 0.063 0.937 11 C 0.068 3.932 12 N -0.884 5.884 13 Si 0.874 3.126 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.284 1.284 17 C 0.083 3.917 18 C 0.431 3.569 19 F -0.182 7.182 20 F -0.190 7.190 21 F -0.178 7.178 22 C -0.280 4.280 23 C 0.081 3.919 24 N -0.319 5.319 25 N -0.376 5.376 26 C 0.101 3.899 27 C 0.142 3.858 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.266 0.734 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.176 0.824 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 -3.418 -0.076 4.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.106 3.894 4 H 0.104 0.896 5 C 0.319 3.681 6 O -0.413 6.413 7 N -0.326 5.326 8 C 0.110 3.890 9 C -0.559 4.559 10 H 0.081 0.919 11 C -0.135 4.135 12 N -0.522 5.522 13 Si 0.703 3.297 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.211 1.211 17 C -0.044 4.044 18 C 0.375 3.625 19 F -0.164 7.164 20 F -0.171 7.171 21 F -0.160 7.160 22 C -0.292 4.292 23 C -0.105 4.105 24 N -0.139 5.139 25 N -0.156 5.156 26 C -0.041 4.041 27 C -0.005 4.005 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.193 0.807 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.009 -3.791 -1.324 5.018 hybrid contribution 0.024 1.080 0.251 1.109 sum -2.985 -2.711 -1.073 4.173 Atomic orbital electron populations 1.22771 0.81283 1.02371 0.99936 1.87962 1.19122 1.25853 1.94795 1.19752 0.92752 0.85268 0.91635 0.89600 1.20277 0.86838 0.83346 0.77670 1.90632 1.64145 1.29897 1.56612 1.47973 1.23477 1.09033 1.52074 1.19751 0.93540 0.78053 0.97645 1.21439 1.23205 1.01435 1.09817 0.91878 1.24834 0.95401 0.96122 0.97126 1.69947 1.34819 1.10791 1.36659 0.86960 0.79199 0.79268 0.84288 1.19379 1.20211 1.21071 1.22358 0.90273 1.08060 0.83692 1.21581 0.74361 0.73627 0.92925 1.93191 1.80099 1.48808 1.94253 1.93141 1.47676 1.96204 1.80119 1.93192 1.74767 1.53449 1.94571 1.19670 1.17749 0.95715 0.96029 1.23497 0.97620 0.99518 0.89912 1.77249 1.22241 0.90524 1.23923 1.48182 1.49286 1.10352 1.07824 1.21979 1.02763 0.85959 0.93391 1.22341 0.96212 0.97710 0.84255 0.94208 0.93952 0.89761 0.94363 0.93065 0.92361 0.86366 0.85799 0.80691 0.91504 0.89848 0.89518 0.80405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.81 101.05 1.09 1.53 16 2 O -0.36 -6.36 9.78 -54.55 -0.53 -6.89 16 3 C 0.17 3.08 2.16 -29.04 -0.06 3.02 16 4 H 0.09 1.48 6.27 -51.92 -0.33 1.15 16 5 C 0.53 10.83 6.75 -10.99 -0.07 10.76 16 6 O -0.54 -12.04 16.09 -13.76 -0.22 -12.26 16 7 N -0.59 -11.66 2.38 -175.06 -0.42 -12.08 16 8 C 0.23 4.81 4.45 -5.19 -0.02 4.79 16 9 C -0.52 -11.79 6.42 -34.44 -0.22 -12.01 16 10 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 11 C 0.07 1.57 4.67 -17.82 -0.08 1.49 16 12 N -0.88 -21.14 13.30 55.43 0.74 -20.41 16 13 Si 0.87 18.36 25.93 -169.99 -4.41 13.95 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.28 -5.28 6.52 56.52 0.37 -4.91 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 C 0.08 1.44 5.52 -4.04 -0.02 1.42 16 18 C 0.43 7.36 3.30 37.16 0.12 7.48 16 19 F -0.18 -3.35 17.10 2.25 0.04 -3.31 16 20 F -0.19 -3.01 17.32 2.25 0.04 -2.97 16 21 F -0.18 -3.24 15.67 2.25 0.04 -3.21 16 22 C -0.28 -5.20 4.41 -105.05 -0.46 -5.66 16 23 C 0.08 1.52 11.79 -17.36 -0.20 1.32 16 24 N -0.32 -6.14 12.57 30.63 0.39 -5.76 16 25 N -0.38 -6.83 4.01 -68.16 -0.27 -7.11 16 26 C 0.10 1.52 10.40 59.84 0.62 2.15 16 27 C 0.14 2.62 7.88 -17.22 -0.14 2.48 16 28 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.80 4.67 -51.93 -0.24 0.56 16 32 H 0.05 1.16 6.81 -51.93 -0.35 0.81 16 33 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 34 H 0.12 1.98 7.27 -51.93 -0.38 1.61 16 35 H 0.12 2.01 8.10 -51.93 -0.42 1.59 16 36 H 0.18 3.07 8.06 -52.49 -0.42 2.64 16 37 H 0.07 1.11 4.43 -51.93 -0.23 0.88 16 38 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.09 1.14 8.13 -51.92 -0.42 0.71 16 40 H 0.18 3.32 6.66 -52.49 -0.35 2.97 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -27.89 342.51 -3.32 -31.21 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.41 Total: 4.90 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: 0.55 Total: 18.76 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.43 Total: -45.35 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.75 Total: -19.15 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 0.11 Total: -9.48 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -4.41 Total: 13.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.89 -3.32 -31.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282654144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.714 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds