Wall clock time and date at job start Tue Mar 31 2020 18:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00058 * 2 1 4 4 H 1.09010 * 109.46954 * 29.99586 * 3 2 1 5 5 C 1.50696 * 109.47460 * 149.99394 * 3 2 1 6 6 O 1.21282 * 119.99940 * 16.92300 * 5 3 2 7 7 N 1.34779 * 120.00219 * 196.91706 * 5 3 2 8 8 C 1.46500 * 119.99983 * 355.66174 * 7 5 3 9 9 C 1.50706 * 109.46883 * 264.28279 * 8 7 5 10 10 H 1.07994 * 119.99750 * 3.38430 * 9 8 7 11 11 C 1.37870 * 119.99832 * 183.38765 * 9 8 7 12 12 N 1.31515 * 120.00117 * 7.24683 * 11 9 8 13 13 Si 1.86796 * 120.00024 * 187.25287 * 11 9 8 14 14 H 1.48505 * 109.47258 * 4.43143 * 13 11 9 15 15 H 1.48498 * 109.47549 * 124.43000 * 13 11 9 16 16 H 1.48499 * 109.47008 * 244.43379 * 13 11 9 17 17 C 1.46496 * 119.99929 * 175.65340 * 7 5 3 18 18 C 1.53005 * 109.47602 * 266.56822 * 17 7 5 19 19 F 1.39897 * 109.46708 * 64.54366 * 18 17 7 20 20 F 1.39900 * 109.47154 * 184.54216 * 18 17 7 21 21 F 1.39900 * 109.46950 * 304.54335 * 18 17 7 22 22 C 1.50702 * 109.47474 * 270.00005 * 3 2 1 23 23 C 1.39875 * 126.03283 * 315.10213 * 22 3 2 24 24 N 1.30838 * 108.19671 * 179.81688 * 23 22 3 25 25 N 1.40080 * 108.20982 * 0.43826 * 24 23 22 26 26 C 1.46494 * 126.03980 * 179.73792 * 25 24 23 27 27 C 1.34955 * 107.92210 * 359.71711 * 25 24 23 28 28 H 1.08993 * 109.47525 * 300.00514 * 1 2 3 29 29 H 1.09005 * 109.46786 * 60.00197 * 1 2 3 30 30 H 1.08997 * 109.47063 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47108 * 24.28155 * 8 7 5 32 32 H 1.08994 * 109.47020 * 144.28522 * 8 7 5 33 33 H 0.96999 * 120.00145 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.47387 * 26.57096 * 17 7 5 35 35 H 1.09004 * 109.47393 * 146.56680 * 17 7 5 36 36 H 1.08001 * 125.90030 * 359.97438 * 23 22 3 37 37 H 1.08994 * 109.47470 * 272.76418 * 26 25 24 38 38 H 1.09007 * 109.46971 * 32.76268 * 26 25 24 39 39 H 1.09007 * 109.47348 * 152.75983 * 26 25 24 40 40 H 1.08002 * 126.12308 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3385 1.2640 0.7105 6 8 3.8924 0.2016 0.8992 7 7 3.9111 2.4074 1.1362 8 6 3.2903 3.6974 0.8253 9 6 3.9294 4.2778 -0.4100 10 1 4.6805 3.7152 -0.9443 11 6 3.5552 5.5269 -0.8577 12 7 2.7488 6.2710 -0.1327 13 14 4.1933 6.1624 -2.4942 14 1 4.9899 5.1010 -3.1608 15 1 3.0471 6.5384 -3.3603 16 1 5.0504 7.3528 -2.2628 17 6 5.1542 2.3603 1.9099 18 6 4.8253 2.3575 3.4042 19 9 4.1332 1.1854 3.7270 20 9 6.0118 2.4170 4.1430 21 9 4.0301 3.4675 3.7086 22 6 2.2146 1.7644 -1.4208 23 6 2.7483 1.0002 -2.4637 24 7 2.7640 1.7378 -3.5442 25 7 2.2494 2.9997 -3.2203 26 6 2.0959 4.1299 -4.1397 27 6 1.9196 2.9903 -1.9117 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2241 3.5546 0.6498 32 1 3.4324 4.3802 1.6629 33 1 2.4852 7.1497 -0.4478 34 1 5.7052 1.4542 1.6575 35 1 5.7627 3.2332 1.6735 36 1 3.0864 -0.0229 -2.3903 37 1 3.0207 4.7062 -4.1646 38 1 1.8730 3.7572 -5.1395 39 1 1.2797 4.7671 -3.7991 40 1 1.4965 3.8140 -1.3558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282654144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:48 Heat of formation + Delta-G solvation = -153.480915 kcal Electronic energy + Delta-G solvation = -31611.958964 eV Core-core repulsion = 26821.159963 eV Total energy + Delta-G solvation = -4790.799001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.05522 -48.57862 -48.53926 -42.25856 -40.77721 -38.46345 -36.93789 -34.69486 -34.22025 -32.51026 -30.75397 -29.48280 -28.49172 -27.36429 -26.17381 -24.96387 -24.23467 -21.96970 -21.70072 -20.47575 -19.54070 -19.43262 -18.94868 -18.50257 -17.95635 -17.75786 -17.40409 -16.68677 -16.55240 -16.16976 -16.10367 -15.57095 -15.43498 -15.31917 -15.17233 -15.03161 -14.99161 -14.73201 -14.70096 -14.40296 -14.02393 -13.99578 -13.73452 -13.61367 -13.40491 -13.27926 -13.24194 -12.84560 -12.80389 -12.34928 -12.28445 -12.08147 -11.73050 -11.62328 -11.04391 -10.63590 -10.53517 -10.16651 -9.75665 -9.25827 -8.19822 -6.25189 1.06231 1.25457 1.39558 1.41202 1.46385 1.62780 1.76343 1.92747 2.02476 2.37623 2.87627 2.95540 3.08664 3.11549 3.37418 3.69605 3.80289 3.94748 4.20788 4.23919 4.24703 4.28440 4.38183 4.42391 4.53269 4.63332 4.66514 4.77002 4.90258 4.95582 5.10283 5.21964 5.52882 5.73752 5.74772 6.04700 6.12465 6.19634 6.40172 6.78824 6.82470 7.15002 7.39790 8.86157 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.010785 B = 0.006434 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.653135 B = 4351.040175 C = 6105.754842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.380 6.380 3 C 0.173 3.827 4 H 0.096 0.904 5 C 0.526 3.474 6 O -0.561 6.561 7 N -0.595 5.595 8 C 0.243 3.757 9 C -0.516 4.516 10 H 0.041 0.959 11 C 0.049 3.951 12 N -0.903 5.903 13 Si 0.909 3.091 14 H -0.287 1.287 15 H -0.244 1.244 16 H -0.296 1.296 17 C 0.079 3.921 18 C 0.439 3.561 19 F -0.189 7.189 20 F -0.180 7.180 21 F -0.184 7.184 22 C -0.282 4.282 23 C 0.072 3.928 24 N -0.333 5.333 25 N -0.377 5.377 26 C 0.091 3.909 27 C 0.141 3.859 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.270 0.730 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.182 0.818 37 H 0.053 0.947 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 -3.116 -0.583 5.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.298 6.298 3 C 0.111 3.889 4 H 0.113 0.887 5 C 0.314 3.686 6 O -0.439 6.439 7 N -0.327 5.327 8 C 0.124 3.876 9 C -0.555 4.555 10 H 0.060 0.940 11 C -0.153 4.153 12 N -0.542 5.542 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.168 1.168 16 H -0.224 1.224 17 C -0.047 4.047 18 C 0.383 3.617 19 F -0.171 7.171 20 F -0.161 7.161 21 F -0.166 7.166 22 C -0.294 4.294 23 C -0.114 4.114 24 N -0.154 5.154 25 N -0.158 5.158 26 C -0.050 4.050 27 C -0.007 4.007 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.199 0.801 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.843 -3.477 -1.839 5.499 hybrid contribution 0.301 0.966 0.420 1.095 sum -3.542 -2.511 -1.418 4.568 Atomic orbital electron populations 1.23026 0.78983 1.04139 1.00783 1.87935 1.21624 1.25368 1.94878 1.19662 0.91918 0.86027 0.91291 0.88664 1.20722 0.87488 0.82993 0.77372 1.90609 1.64996 1.30619 1.57697 1.47977 1.24042 1.08503 1.52151 1.19492 0.93658 0.78153 0.96312 1.21309 1.22748 1.01347 1.10072 0.94031 1.25124 0.95440 0.96123 0.98602 1.69987 1.35521 1.11125 1.37540 0.86482 0.79457 0.77672 0.82717 1.21334 1.16796 1.22381 1.22501 0.89657 1.08879 0.83670 1.21398 0.74399 0.73161 0.92732 1.93179 1.80345 1.49238 1.94295 1.93160 1.46998 1.96128 1.79846 1.93182 1.75035 1.53746 1.94602 1.19743 1.17764 0.95814 0.96109 1.23660 0.97759 0.99959 0.89989 1.77203 1.22702 0.91214 1.24294 1.48440 1.48648 1.10574 1.08133 1.22260 1.02836 0.85418 0.94445 1.22327 0.96273 0.97524 0.84549 0.92973 0.93429 0.87610 0.94040 0.94526 0.92079 0.85791 0.84759 0.80101 0.92856 0.87339 0.87329 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.81 113.37 1.23 1.87 16 2 O -0.38 -13.01 9.78 -130.51 -1.28 -14.28 16 3 C 0.17 6.20 2.16 29.10 0.06 6.26 16 4 H 0.10 3.17 6.27 -2.38 -0.01 3.15 16 5 C 0.53 21.20 6.75 87.66 0.59 21.79 16 6 O -0.56 -25.03 16.09 15.43 0.25 -24.78 16 7 N -0.59 -23.11 2.38 -826.16 -1.96 -25.08 16 8 C 0.24 10.08 4.45 85.64 0.38 10.47 16 9 C -0.52 -23.09 6.42 25.60 0.16 -22.92 16 10 H 0.04 2.04 7.82 -2.91 -0.02 2.02 16 11 C 0.05 2.19 4.67 84.65 0.40 2.59 16 12 N -0.90 -42.06 13.30 21.44 0.29 -41.77 16 13 Si 0.91 36.56 25.93 68.60 1.78 38.34 16 14 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 15 H -0.24 -8.47 6.52 99.48 0.65 -7.83 16 16 H -0.30 -12.50 7.11 99.48 0.71 -11.80 16 17 C 0.08 2.70 5.52 86.38 0.48 3.18 16 18 C 0.44 14.62 3.30 71.98 0.24 14.86 16 19 F -0.19 -6.81 17.10 44.97 0.77 -6.05 16 20 F -0.18 -5.47 17.32 44.97 0.78 -4.69 16 21 F -0.18 -6.55 15.67 44.97 0.70 -5.85 16 22 C -0.28 -10.24 4.41 -20.14 -0.09 -10.33 16 23 C 0.07 2.67 11.79 85.24 1.00 3.68 16 24 N -0.33 -12.48 12.57 -57.02 -0.72 -13.20 16 25 N -0.38 -13.12 4.01 -369.57 -1.48 -14.61 16 26 C 0.09 2.53 10.40 127.77 1.33 3.86 16 27 C 0.14 5.03 7.88 83.54 0.66 5.69 16 28 H 0.05 1.13 8.08 -2.39 -0.02 1.11 16 29 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.70 4.67 -2.39 -0.01 1.69 16 32 H 0.04 1.64 6.81 -2.39 -0.02 1.63 16 33 H 0.27 12.01 8.31 -92.71 -0.77 11.24 16 34 H 0.12 4.10 7.27 -2.39 -0.02 4.08 16 35 H 0.13 4.27 8.10 -2.39 -0.02 4.25 16 36 H 0.18 6.29 8.06 -2.91 -0.02 6.26 16 37 H 0.05 1.64 4.43 -2.39 -0.01 1.63 16 38 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.11 2.51 8.13 -2.38 -0.02 2.49 16 40 H 0.18 6.36 6.66 -2.91 -0.02 6.34 16 Total: -1.00 -57.43 342.51 6.60 -50.82 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 1.04 Total: 20.16 kcal Atomic # 6 Polarization: 34.54 SS G_CDS: 6.44 Total: 40.98 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -3.88 Total: -94.65 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.03 Total: -39.06 kcal Atomic # 9 Polarization: -18.84 SS G_CDS: 2.25 Total: -16.59 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 1.78 Total: 38.34 kcal Total: -57.43 6.60 -50.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282654144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.658 kcal (2) G-P(sol) polarization free energy of solvation -57.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds