Wall clock time and date at job start Tue Mar 31 2020 18:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34649 * 116.99936 * 2 1 4 4 O 1.21511 * 119.99986 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00120 * 180.02562 * 3 2 1 6 6 C 1.39945 * 120.00096 * 174.11105 * 5 3 2 7 7 C 1.38947 * 120.03436 * 151.49099 * 6 5 3 8 8 C 1.38152 * 120.08498 * 180.02562 * 7 6 5 9 9 C 1.38168 * 120.14333 * 359.97438 * 8 7 6 10 10 C 1.38956 * 120.06010 * 359.97438 * 9 8 7 11 11 N 1.39725 * 120.03365 * 179.97438 * 10 9 8 12 12 C 1.34774 * 120.00470 * 331.36869 * 11 10 9 13 13 O 1.21374 * 119.99899 * 353.41132 * 12 11 10 14 14 C 1.49356 * 119.99937 * 173.41465 * 12 11 10 15 15 O 1.21359 * 120.00161 * 4.18671 * 14 12 11 16 16 N 1.34774 * 119.99774 * 184.19424 * 14 12 11 17 17 C 1.46498 * 120.00086 * 1.00343 * 16 14 12 18 18 C 1.46504 * 120.00143 * 181.01260 * 16 14 12 19 19 C 1.50691 * 109.47531 * 89.99319 * 18 16 14 20 20 H 1.07999 * 120.00069 * 359.97438 * 19 18 16 21 21 C 1.37877 * 120.00439 * 180.02562 * 19 18 16 22 22 N 1.31521 * 119.99325 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00574 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47006 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47217 * 119.99682 * 23 21 19 26 26 H 1.48500 * 109.47347 * 240.00413 * 23 21 19 27 27 C 1.38707 * 120.03249 * 331.21355 * 6 5 3 28 28 H 1.09005 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47182 * 299.99683 * 1 2 3 30 30 H 1.09000 * 109.47269 * 60.00273 * 1 2 3 31 31 H 0.97003 * 120.00173 * 353.83745 * 5 3 2 32 32 H 1.08007 * 119.95671 * 0.02562 * 7 6 5 33 33 H 1.07998 * 119.92842 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.96728 * 180.02562 * 9 8 7 35 35 H 0.97000 * 119.99619 * 151.37140 * 11 10 9 36 36 H 1.08999 * 109.47475 * 83.23071 * 17 16 14 37 37 H 1.09007 * 109.46868 * 203.22658 * 17 16 14 38 38 H 1.09000 * 109.47299 * 323.22722 * 17 16 14 39 39 H 1.09000 * 109.47406 * 209.99775 * 18 16 14 40 40 H 1.09007 * 109.46862 * 329.99201 * 18 16 14 41 41 H 0.97007 * 119.99362 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.07124 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2703 -0.0005 6 6 4.0448 2.5109 -0.1249 7 6 5.2995 2.7090 0.4382 8 6 5.9277 3.9334 0.3165 9 6 5.3112 4.9648 -0.3656 10 6 4.0569 4.7729 -0.9319 11 7 3.4338 5.8164 -1.6212 12 6 3.6965 7.0957 -1.2882 13 8 4.3792 7.3416 -0.3152 14 6 3.1475 8.2108 -2.1164 15 8 2.4031 7.9684 -3.0436 16 7 3.4790 9.4862 -1.8340 17 6 4.3951 9.7774 -0.7285 18 6 2.9230 10.5816 -2.6324 19 6 1.6291 11.0465 -2.0154 20 1 1.2578 10.5732 -1.1185 21 6 0.9188 12.0755 -2.5965 22 7 1.3703 12.6509 -3.6896 23 14 -0.6854 12.6514 -1.8321 24 1 -0.9715 11.8471 -0.6170 25 1 -0.5703 14.0845 -1.4606 26 1 -1.7893 12.4806 -2.8106 27 6 3.4253 3.5422 -0.8153 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9373 0.4617 0.0893 32 1 5.7843 1.9047 0.9717 33 1 6.9027 4.0847 0.7556 34 1 5.8051 5.9207 -0.4593 35 1 2.8120 5.6201 -2.3393 36 1 5.4241 9.6669 -1.0706 37 1 4.2348 10.7989 -0.3832 38 1 4.2081 9.0833 0.0909 39 1 3.6317 11.4093 -2.6572 40 1 2.7364 10.2325 -3.6480 41 1 0.8707 13.3751 -4.0982 42 1 2.4518 3.3894 -1.2574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283304456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:52 Heat of formation + Delta-G solvation = -89.359649 kcal Electronic energy + Delta-G solvation = -28072.603734 eV Core-core repulsion = 23826.441980 eV Total energy + Delta-G solvation = -4246.161754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34475 -40.72446 -39.27484 -37.99976 -36.92397 -35.84028 -35.05976 -34.12537 -32.57952 -30.40523 -29.72539 -28.06156 -27.75469 -26.23726 -24.69323 -23.69941 -22.97815 -21.90080 -21.10967 -19.63420 -19.20019 -18.17656 -17.41262 -16.98921 -16.79390 -16.65416 -16.45255 -15.92573 -15.61092 -15.24052 -14.93472 -14.78015 -14.44670 -14.34407 -14.03573 -13.65237 -13.64833 -13.11831 -12.98775 -12.50390 -12.49308 -12.28022 -12.10392 -12.02930 -11.81122 -11.30780 -11.29823 -11.17346 -10.97441 -10.73330 -10.62156 -10.50708 -10.27631 -10.20835 -9.65454 -8.79710 -8.59184 -8.48653 -8.13849 -7.78984 -6.09954 -4.15174 0.96489 1.13117 1.67589 1.92125 2.39746 2.68410 3.28827 3.36218 3.41411 3.55532 3.73102 3.80619 4.02492 4.41337 4.68187 4.74542 4.78144 4.84247 4.88249 5.06268 5.14510 5.21302 5.25020 5.28034 5.40801 5.76252 5.95015 5.99019 5.99835 6.09981 6.18102 6.24240 6.31542 6.57637 6.78673 6.87567 6.89847 7.19761 7.27749 7.36897 7.82168 7.82635 7.90745 8.13172 8.18865 8.61352 8.90106 9.50017 10.98311 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.002554 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.065141 B =10959.122984 C =12407.719848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.370 6.370 3 C 0.645 3.355 4 O -0.545 6.545 5 N -0.647 5.647 6 C 0.177 3.823 7 C -0.164 4.164 8 C -0.076 4.076 9 C -0.140 4.140 10 C 0.177 3.823 11 N -0.649 5.649 12 C 0.512 3.488 13 O -0.498 6.498 14 C 0.495 3.505 15 O -0.523 6.523 16 N -0.560 5.560 17 C 0.064 3.936 18 C 0.241 3.759 19 C -0.530 4.530 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.893 5.893 23 Si 0.901 3.099 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.282 1.282 27 C -0.155 4.155 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.418 0.582 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.424 0.576 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.264 0.736 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 -25.773 7.916 28.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.283 6.283 3 C 0.398 3.602 4 O -0.432 6.432 5 N -0.298 5.298 6 C 0.083 3.917 7 C -0.185 4.185 8 C -0.095 4.095 9 C -0.161 4.161 10 C 0.081 3.919 11 N -0.295 5.295 12 C 0.296 3.704 13 O -0.372 6.372 14 C 0.275 3.725 15 O -0.401 6.401 16 N -0.291 5.291 17 C -0.079 4.079 18 C 0.122 3.878 19 C -0.568 4.568 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.728 3.272 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.178 4.178 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.255 0.745 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.368 -25.034 7.921 27.272 hybrid contribution -1.186 -0.058 0.135 1.195 sum 6.182 -25.093 8.056 27.070 Atomic orbital electron populations 1.23293 0.73578 1.03809 1.03250 1.86232 1.24804 1.30511 1.86794 1.18134 0.83112 0.82572 0.76378 1.91072 1.64294 1.34478 1.53312 1.41902 1.03515 1.09394 1.74988 1.17073 0.92773 0.84204 0.97654 1.20731 0.95247 0.98900 1.03610 1.20793 0.99625 0.91488 0.97573 1.21318 0.93429 1.00924 1.00398 1.17562 0.91668 0.87368 0.95316 1.43308 1.45298 1.04176 1.36681 1.21010 0.80511 0.83961 0.84934 1.90611 1.37079 1.83002 1.26544 1.19476 0.83625 0.83993 0.85422 1.90745 1.35973 1.83264 1.30120 1.48124 1.43436 1.05649 1.31936 1.22292 0.91899 1.03166 0.90543 1.19540 0.93951 0.82588 0.91689 1.21427 1.06321 1.17573 1.11509 0.92168 1.24936 0.98074 0.96164 0.94851 1.69947 1.39250 1.24604 1.19397 0.86391 0.83126 0.78340 0.79300 1.19702 1.20860 1.20788 1.20880 1.01674 0.92476 1.02751 0.87644 0.91498 0.91415 0.74525 0.85435 0.84911 0.83857 0.73819 0.93427 0.91027 0.88518 0.94109 0.93354 0.92636 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 10.56 101.05 1.07 1.41 16 2 O -0.37 -3.16 10.62 -40.35 -0.43 -3.59 16 3 C 0.64 6.93 8.51 54.06 0.46 7.39 16 4 O -0.54 -7.80 13.54 -19.28 -0.26 -8.06 16 5 N -0.65 -5.53 5.36 -14.29 -0.08 -5.61 16 6 C 0.18 1.86 6.36 -83.72 -0.53 1.33 16 7 C -0.16 -1.43 9.95 -39.35 -0.39 -1.82 16 8 C -0.08 -0.73 10.03 -39.64 -0.40 -1.13 16 9 C -0.14 -1.76 8.67 -39.34 -0.34 -2.10 16 10 C 0.18 2.43 6.35 -83.78 -0.53 1.90 16 11 N -0.65 -9.85 5.34 -10.31 -0.06 -9.91 16 12 C 0.51 9.07 7.54 -11.63 -0.09 8.98 16 13 O -0.50 -8.79 10.53 5.48 0.06 -8.73 16 14 C 0.49 10.57 7.74 -11.63 -0.09 10.48 16 15 O -0.52 -12.54 16.06 5.49 0.09 -12.45 16 16 N -0.56 -12.39 2.86 -183.50 -0.52 -12.92 16 17 C 0.06 1.16 9.59 59.85 0.57 1.73 16 18 C 0.24 6.29 5.14 -5.20 -0.03 6.26 16 19 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 20 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 23 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C -0.16 -2.00 8.58 -39.19 -0.34 -2.33 16 28 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.42 2.09 8.91 -40.82 -0.36 1.73 16 32 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.93 6.10 -52.49 -0.32 1.61 16 35 H 0.42 6.03 8.28 -40.82 -0.34 5.69 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.28 8.02 -51.92 -0.42 0.86 16 38 H 0.10 1.72 5.30 -51.98 -0.28 1.44 16 39 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 40 H 0.05 1.39 7.41 -51.92 -0.38 1.00 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 42 H 0.15 2.00 6.09 -52.48 -0.32 1.68 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -34.93 365.28 -5.95 -40.89 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.92 Total: 5.15 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: -1.05 Total: 18.41 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.08 Total: -53.99 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.54 Total: -32.84 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.93 -5.95 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283304456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.473 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds