Wall clock time and date at job start Tue Mar 31 2020 18:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34649 * 116.99936 * 2 1 4 4 O 1.21511 * 119.99986 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00120 * 180.02562 * 3 2 1 6 6 C 1.39945 * 120.00096 * 174.11105 * 5 3 2 7 7 C 1.38947 * 120.03436 * 151.49099 * 6 5 3 8 8 C 1.38152 * 120.08498 * 180.02562 * 7 6 5 9 9 C 1.38168 * 120.14333 * 359.97438 * 8 7 6 10 10 C 1.38956 * 120.06010 * 359.97438 * 9 8 7 11 11 N 1.39725 * 120.03365 * 179.97438 * 10 9 8 12 12 C 1.34774 * 120.00470 * 331.36869 * 11 10 9 13 13 O 1.21374 * 119.99899 * 353.41132 * 12 11 10 14 14 C 1.49356 * 119.99937 * 173.41465 * 12 11 10 15 15 O 1.21359 * 120.00161 * 4.18671 * 14 12 11 16 16 N 1.34774 * 119.99774 * 184.19424 * 14 12 11 17 17 C 1.46498 * 120.00086 * 1.00343 * 16 14 12 18 18 C 1.46504 * 120.00143 * 181.01260 * 16 14 12 19 19 C 1.50691 * 109.47531 * 89.99319 * 18 16 14 20 20 H 1.07999 * 120.00069 * 359.97438 * 19 18 16 21 21 C 1.37877 * 120.00439 * 180.02562 * 19 18 16 22 22 N 1.31521 * 119.99325 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00574 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47006 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47217 * 119.99682 * 23 21 19 26 26 H 1.48500 * 109.47347 * 240.00413 * 23 21 19 27 27 C 1.38707 * 120.03249 * 331.21355 * 6 5 3 28 28 H 1.09005 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47182 * 299.99683 * 1 2 3 30 30 H 1.09000 * 109.47269 * 60.00273 * 1 2 3 31 31 H 0.97003 * 120.00173 * 353.83745 * 5 3 2 32 32 H 1.08007 * 119.95671 * 0.02562 * 7 6 5 33 33 H 1.07998 * 119.92842 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.96728 * 180.02562 * 9 8 7 35 35 H 0.97000 * 119.99619 * 151.37140 * 11 10 9 36 36 H 1.08999 * 109.47475 * 83.23071 * 17 16 14 37 37 H 1.09007 * 109.46868 * 203.22658 * 17 16 14 38 38 H 1.09000 * 109.47299 * 323.22722 * 17 16 14 39 39 H 1.09000 * 109.47406 * 209.99775 * 18 16 14 40 40 H 1.09007 * 109.46862 * 329.99201 * 18 16 14 41 41 H 0.97007 * 119.99362 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.07124 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2703 -0.0005 6 6 4.0448 2.5109 -0.1249 7 6 5.2995 2.7090 0.4382 8 6 5.9277 3.9334 0.3165 9 6 5.3112 4.9648 -0.3656 10 6 4.0569 4.7729 -0.9319 11 7 3.4338 5.8164 -1.6212 12 6 3.6965 7.0957 -1.2882 13 8 4.3792 7.3416 -0.3152 14 6 3.1475 8.2108 -2.1164 15 8 2.4031 7.9684 -3.0436 16 7 3.4790 9.4862 -1.8340 17 6 4.3951 9.7774 -0.7285 18 6 2.9230 10.5816 -2.6324 19 6 1.6291 11.0465 -2.0154 20 1 1.2578 10.5732 -1.1185 21 6 0.9188 12.0755 -2.5965 22 7 1.3703 12.6509 -3.6896 23 14 -0.6854 12.6514 -1.8321 24 1 -0.9715 11.8471 -0.6170 25 1 -0.5703 14.0845 -1.4606 26 1 -1.7893 12.4806 -2.8106 27 6 3.4253 3.5422 -0.8153 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9373 0.4617 0.0893 32 1 5.7843 1.9047 0.9717 33 1 6.9027 4.0847 0.7556 34 1 5.8051 5.9207 -0.4593 35 1 2.8120 5.6201 -2.3393 36 1 5.4241 9.6669 -1.0706 37 1 4.2348 10.7989 -0.3832 38 1 4.2081 9.0833 0.0909 39 1 3.6317 11.4093 -2.6572 40 1 2.7364 10.2325 -3.6480 41 1 0.8707 13.3751 -4.0982 42 1 2.4518 3.3894 -1.2574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283304456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:51 Heat of formation + Delta-G solvation = -115.506289 kcal Electronic energy + Delta-G solvation = -28073.737537 eV Core-core repulsion = 23826.441980 eV Total energy + Delta-G solvation = -4247.295557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.35061 -41.89490 -40.42671 -39.37181 -37.82749 -37.19641 -36.36436 -35.30195 -34.66813 -31.32388 -30.68403 -30.01527 -28.36436 -27.78936 -26.42032 -24.60081 -24.46498 -22.90066 -22.27254 -20.95657 -20.12277 -19.12992 -18.80916 -18.76794 -17.90002 -17.83574 -17.52185 -17.24352 -16.93810 -16.79597 -16.30550 -15.98601 -15.84830 -15.27983 -15.06278 -14.87976 -14.72524 -14.42633 -14.25378 -13.95233 -13.85992 -13.66940 -13.38848 -13.10778 -13.02715 -12.90350 -12.76854 -12.60444 -12.27778 -12.20641 -12.17116 -11.90617 -11.72350 -11.52917 -11.23452 -10.68015 -10.35863 -9.64889 -9.50585 -9.04942 -8.27512 -6.42106 -0.10802 0.23323 0.61697 0.96194 1.26252 1.36652 1.38465 1.51074 1.57734 2.08809 2.34814 2.54078 2.80802 3.03010 3.10021 3.23055 3.90854 4.14551 4.18446 4.28919 4.32006 4.32814 4.37399 4.46560 4.53465 4.67353 4.69437 4.83631 4.93674 5.04324 5.12178 5.21516 5.22260 5.25225 5.33489 5.41156 5.50368 5.67349 5.90090 5.96512 5.99527 6.18593 6.33945 6.60475 6.66580 6.93782 7.08648 7.28415 8.80453 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.002554 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.065141 B =10959.122984 C =12407.719848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.363 6.363 3 C 0.642 3.358 4 O -0.587 6.587 5 N -0.630 5.630 6 C 0.172 3.828 7 C -0.141 4.141 8 C -0.068 4.068 9 C -0.153 4.153 10 C 0.148 3.852 11 N -0.639 5.639 12 C 0.522 3.478 13 O -0.498 6.498 14 C 0.488 3.512 15 O -0.559 6.559 16 N -0.569 5.569 17 C 0.067 3.933 18 C 0.255 3.745 19 C -0.549 4.549 20 H 0.052 0.948 21 C 0.013 3.987 22 N -0.923 5.923 23 Si 0.969 3.031 24 H -0.271 1.271 25 H -0.267 1.267 26 H -0.278 1.278 27 C -0.167 4.167 28 H 0.142 0.858 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.437 0.563 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.133 0.867 35 H 0.424 0.576 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.013 0.987 41 H 0.270 0.730 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 -28.008 10.040 31.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.276 6.276 3 C 0.396 3.604 4 O -0.476 6.476 5 N -0.283 5.283 6 C 0.077 3.923 7 C -0.162 4.162 8 C -0.087 4.087 9 C -0.173 4.173 10 C 0.054 3.946 11 N -0.284 5.284 12 C 0.305 3.695 13 O -0.373 6.373 14 C 0.270 3.730 15 O -0.439 6.439 16 N -0.300 5.300 17 C -0.075 4.075 18 C 0.134 3.866 19 C -0.587 4.587 20 H 0.070 0.930 21 C -0.187 4.187 22 N -0.563 5.563 23 Si 0.793 3.207 24 H -0.195 1.195 25 H -0.192 1.192 26 H -0.204 1.204 27 C -0.190 4.190 28 H 0.160 0.840 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.278 0.722 32 H 0.189 0.811 33 H 0.184 0.816 34 H 0.150 0.850 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.055 0.945 40 H 0.031 0.969 41 H 0.079 0.921 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.454 -27.347 10.074 30.345 hybrid contribution -1.462 0.471 -0.521 1.622 sum 6.992 -26.876 9.553 29.368 Atomic orbital electron populations 1.23576 0.72346 1.05996 1.02673 1.86256 1.25977 1.29086 1.86324 1.18380 0.83635 0.82594 0.75812 1.91056 1.65352 1.35999 1.55222 1.41771 1.02940 1.09635 1.73997 1.17241 0.93476 0.84277 0.97274 1.21176 0.93834 0.99563 1.01585 1.21188 1.00633 0.90753 0.96134 1.21397 0.93117 1.01625 1.01191 1.17729 0.92688 0.87155 0.97076 1.43158 1.44941 1.03685 1.36635 1.20073 0.80924 0.83892 0.84591 1.90597 1.37354 1.83039 1.26299 1.20130 0.82961 0.84685 0.85257 1.90710 1.37486 1.83979 1.31706 1.48119 1.44032 1.05286 1.32543 1.22446 0.92228 1.03324 0.89482 1.19074 0.93533 0.83430 0.90533 1.21647 1.07492 1.18049 1.11506 0.93021 1.25812 1.01525 0.96127 0.95236 1.70043 1.40731 1.25043 1.20446 0.85347 0.78590 0.78410 0.78347 1.19511 1.19241 1.20378 1.20830 1.01361 0.93068 1.03720 0.84029 0.92018 0.92151 0.72221 0.81127 0.81564 0.84971 0.73734 0.91045 0.91004 0.87829 0.94542 0.96880 0.92137 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -5.66 10.62 -55.59 -0.59 -6.25 16 3 C 0.64 13.16 8.51 129.79 1.10 14.26 16 4 O -0.59 -16.98 13.54 19.81 0.27 -16.71 16 5 N -0.63 -9.33 5.36 -429.52 -2.30 -11.63 16 6 C 0.17 3.23 6.36 38.13 0.24 3.48 16 7 C -0.14 -1.88 9.95 22.42 0.22 -1.65 16 8 C -0.07 -1.08 10.03 22.23 0.22 -0.85 16 9 C -0.15 -3.63 8.67 22.43 0.19 -3.44 16 10 C 0.15 4.07 6.35 38.20 0.24 4.31 16 11 N -0.64 -20.05 5.34 -304.90 -1.63 -21.68 16 12 C 0.52 18.92 7.54 87.24 0.66 19.57 16 13 O -0.50 -17.47 10.53 -3.32 -0.03 -17.51 16 14 C 0.49 21.67 7.74 87.24 0.67 22.34 16 15 O -0.56 -28.23 16.06 -3.27 -0.05 -28.28 16 16 N -0.57 -25.94 2.86 -852.83 -2.44 -28.38 16 17 C 0.07 2.41 9.59 127.77 1.22 3.63 16 18 C 0.25 13.86 5.14 85.63 0.44 14.30 16 19 C -0.55 -31.98 9.39 25.60 0.24 -31.74 16 20 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 21 C 0.01 0.73 5.46 84.65 0.46 1.20 16 22 N -0.92 -55.30 13.29 21.45 0.28 -55.02 16 23 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 27 C -0.17 -4.27 8.58 22.52 0.19 -4.08 16 28 H 0.14 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.44 2.88 8.91 -92.71 -0.83 2.06 16 32 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.13 3.44 6.10 -2.91 -0.02 3.42 16 35 H 0.42 12.87 8.28 -92.71 -0.77 12.10 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 2.56 8.02 -2.38 -0.02 2.54 16 38 H 0.10 3.63 5.30 -3.27 -0.02 3.62 16 39 H 0.04 1.99 8.07 -2.39 -0.02 1.97 16 40 H 0.01 0.80 7.41 -2.38 -0.02 0.78 16 41 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 42 H 0.13 3.70 6.09 -2.91 -0.02 3.68 16 Total: -1.00 -78.35 365.28 2.36 -76.00 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.50 Total: 19.15 kcal Atomic # 6 Polarization: 35.74 SS G_CDS: 7.32 Total: 43.06 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -6.08 Total: -116.71 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: -0.41 Total: -68.75 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -78.35 2.36 -76.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283304456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.508 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds