Wall clock time and date at job start Tue Mar 31 2020 18:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40078 * 126.03632 * 2 1 4 4 C 1.30835 * 108.20414 * 180.02562 * 3 2 1 5 5 C 1.39867 * 108.20391 * 359.78057 * 4 3 2 6 6 C 1.34942 * 126.03533 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.12730 * 359.94220 * 6 2 1 8 8 O 1.42903 * 109.46878 * 179.97438 * 7 6 2 9 9 C 1.42899 * 113.99629 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47140 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00000 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00301 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00017 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47003 * 89.99701 * 13 12 10 15 15 H 1.07996 * 120.00571 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99934 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99776 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00304 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46804 * 90.00145 * 18 16 14 20 20 H 1.48504 * 109.47026 * 210.00193 * 18 16 14 21 21 H 1.48498 * 109.47241 * 330.00032 * 18 16 14 22 22 C 1.46495 * 119.99833 * 359.97438 * 12 10 9 23 23 C 1.53001 * 109.46971 * 90.00246 * 22 12 10 24 24 F 1.39901 * 109.46828 * 60.00394 * 23 22 12 25 25 F 1.39904 * 109.47282 * 179.97438 * 23 22 12 26 26 F 1.39895 * 109.47302 * 299.99895 * 23 22 12 27 27 H 1.09004 * 109.46977 * 269.97506 * 1 2 3 28 28 H 1.09004 * 109.47012 * 29.96800 * 1 2 3 29 29 H 1.08994 * 109.47199 * 149.97712 * 1 2 3 30 30 H 1.08001 * 125.89995 * 180.02562 * 4 3 2 31 31 H 1.08002 * 126.04530 * 180.23700 * 5 4 3 32 32 H 1.09002 * 109.47060 * 299.99858 * 7 6 2 33 33 H 1.09001 * 109.47380 * 59.99945 * 7 6 2 34 34 H 1.09007 * 109.47484 * 299.99646 * 9 8 7 35 35 H 1.09004 * 109.47459 * 59.99983 * 9 8 7 36 36 H 1.09001 * 109.46980 * 209.99769 * 13 12 10 37 37 H 1.08997 * 109.47188 * 329.99424 * 13 12 10 38 38 H 0.97001 * 119.99903 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47359 * 210.00371 * 22 12 10 40 40 H 1.09001 * 109.47512 * 330.00444 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5437 -0.6666 0.0042 6 6 2.2589 -1.0912 -0.0005 7 6 1.7973 -2.5258 0.0001 8 8 2.9339 -3.3919 -0.0013 9 6 2.6049 -4.7825 -0.0003 10 6 3.8719 -5.5984 -0.0013 11 8 4.9505 -5.0437 -0.0032 12 7 3.8066 -6.9446 -0.0011 13 6 5.0384 -7.7378 -0.0026 14 6 5.4625 -8.0096 1.4176 15 1 4.8738 -7.6292 2.2393 16 6 6.6023 -8.7439 1.6682 17 7 7.3195 -9.2067 0.6676 18 14 7.1286 -9.0802 3.4287 19 1 6.5094 -10.3461 3.8971 20 1 8.6075 -9.2005 3.4888 21 1 6.6872 -7.9614 4.2996 22 6 2.5039 -7.6147 0.0006 23 6 2.0486 -7.8481 -1.4413 24 9 2.9850 -8.6508 -2.1018 25 9 0.8048 -8.4886 -1.4397 26 9 1.9399 -6.6192 -2.1008 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 4.4054 1.3710 -0.0003 31 1 4.4211 -1.2964 0.0086 32 1 1.1976 -2.7141 0.8906 33 1 1.1961 -2.7144 -0.8894 34 1 2.0226 -5.0175 0.8907 35 1 2.0199 -5.0182 -0.8893 36 1 4.8613 -8.6828 -0.5161 37 1 5.8250 -7.1863 -0.5176 38 1 8.1212 -9.7236 0.8438 39 1 2.5885 -8.5723 0.5145 40 1 1.7743 -6.9895 0.5153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283307660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:51 Heat of formation + Delta-G solvation = -165.344693 kcal Electronic energy + Delta-G solvation = -29421.770516 eV Core-core repulsion = 24630.457063 eV Total energy + Delta-G solvation = -4791.313453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.07155 -48.61780 -48.53606 -42.19861 -40.91337 -38.68178 -36.94252 -34.86125 -34.27782 -32.35072 -31.02385 -29.93074 -28.13978 -27.60671 -26.73601 -24.70756 -24.48857 -22.08912 -20.98638 -20.62006 -19.53498 -19.46409 -19.10801 -18.47819 -18.00778 -17.86725 -17.44391 -17.03358 -16.80002 -16.38286 -16.12470 -15.53650 -15.48232 -15.39723 -15.31763 -14.98207 -14.82813 -14.71278 -14.69458 -14.53528 -14.33909 -13.87198 -13.66912 -13.60822 -13.45113 -13.24625 -13.19533 -13.03975 -12.86905 -12.59110 -12.52533 -12.20875 -11.75933 -11.73341 -10.95571 -10.73491 -10.62162 -10.17846 -9.79721 -9.48559 -8.21775 -6.35919 0.80543 1.35350 1.40446 1.43493 1.45558 1.53618 1.77861 1.83621 1.96137 2.40668 2.68568 2.88960 3.05211 3.10352 3.23443 3.55443 3.66600 3.75326 3.94379 4.15335 4.19818 4.20168 4.32718 4.37978 4.42792 4.47379 4.68402 4.71552 4.80709 4.91518 5.18110 5.21381 5.40032 5.69196 5.73689 5.90394 6.02772 6.09616 6.43729 6.67512 6.73432 7.19150 7.36511 8.86473 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.003412 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.542864 B = 8204.288087 C =10147.730152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.371 5.371 3 N -0.323 5.323 4 C 0.040 3.960 5 C -0.277 4.277 6 C 0.075 3.925 7 C 0.127 3.873 8 O -0.384 6.384 9 C 0.046 3.954 10 C 0.502 3.498 11 O -0.563 6.563 12 N -0.600 5.600 13 C 0.261 3.739 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.271 1.271 22 C 0.067 3.933 23 C 0.434 3.566 24 F -0.195 7.195 25 F -0.172 7.172 26 F -0.186 7.186 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.205 0.795 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.034 0.966 37 H -0.002 1.002 38 H 0.267 0.733 39 H 0.140 0.860 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.374 9.607 -1.038 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.156 5.156 3 N -0.145 5.145 4 C -0.144 4.144 5 C -0.306 4.306 6 C -0.054 4.054 7 C 0.049 3.951 8 O -0.302 6.302 9 C -0.033 4.033 10 C 0.291 3.709 11 O -0.440 6.440 12 N -0.333 5.333 13 C 0.140 3.860 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.793 3.207 19 H -0.187 1.187 20 H -0.213 1.213 21 H -0.195 1.195 22 C -0.058 4.058 23 C 0.378 3.622 24 F -0.177 7.177 25 F -0.154 7.154 26 F -0.167 7.167 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.133 0.867 30 H 0.221 0.779 31 H 0.152 0.848 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.052 0.948 37 H 0.017 0.983 38 H 0.076 0.924 39 H 0.158 0.842 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -21.396 10.889 -1.118 24.034 hybrid contribution 1.437 -1.136 0.203 1.842 sum -19.959 9.754 -0.916 22.234 Atomic orbital electron populations 1.22306 0.71707 1.06286 1.05021 1.48714 1.07843 1.02001 1.57041 1.77279 1.02404 1.08533 1.26323 1.24253 0.95820 0.95145 0.99214 1.21440 0.97474 0.95174 1.16502 1.20861 0.91731 0.90771 1.02006 1.20900 0.87607 0.82462 1.04139 1.87991 1.31454 1.14905 1.95891 1.22630 0.93506 0.81206 1.05980 1.21107 0.91663 0.82387 0.75745 1.90706 1.32922 1.71115 1.49307 1.47998 1.07378 1.05483 1.72397 1.18912 0.80978 0.89546 0.96533 1.21711 1.10140 1.33518 0.92865 0.91762 1.25858 0.96078 0.95390 1.01794 1.70066 1.16887 1.36724 1.33090 0.85406 0.77249 0.78916 0.79174 1.18674 1.21284 1.19531 1.23070 0.87294 1.05623 0.89857 1.21627 0.74998 0.73730 0.91870 1.93199 1.66135 1.74531 1.83816 1.93198 1.42992 1.82181 1.96985 1.93086 1.95930 1.43755 1.83942 0.89078 0.88565 0.86740 0.77860 0.84797 0.87873 0.88241 0.85851 0.86811 0.94761 0.98337 0.92450 0.84209 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 11.27 127.77 1.44 2.28 16 2 N -0.37 -7.85 4.01 -356.02 -1.43 -9.28 16 3 N -0.32 -8.42 12.58 -57.03 -0.72 -9.14 16 4 C 0.04 1.03 12.03 85.24 1.02 2.05 16 5 C -0.28 -7.96 10.14 21.99 0.22 -7.74 16 6 C 0.07 1.77 6.91 41.41 0.29 2.06 16 7 C 0.13 2.26 5.90 71.24 0.42 2.68 16 8 O -0.38 -10.87 9.17 -129.94 -1.19 -12.06 16 9 C 0.05 1.11 4.90 71.24 0.35 1.46 16 10 C 0.50 19.50 7.42 87.66 0.65 20.15 16 11 O -0.56 -29.13 16.08 16.00 0.26 -28.88 16 12 N -0.60 -22.70 2.37 -826.17 -1.96 -24.66 16 13 C 0.26 13.24 4.95 85.63 0.42 13.66 16 14 C -0.54 -29.44 9.39 25.60 0.24 -29.20 16 15 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 16 C 0.01 0.45 5.46 84.65 0.46 0.91 16 17 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 18 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C 0.07 1.62 5.33 86.38 0.46 2.08 16 23 C 0.43 10.74 3.29 71.98 0.24 10.97 16 24 F -0.20 -6.40 16.22 44.97 0.73 -5.67 16 25 F -0.17 -3.56 17.32 44.97 0.78 -2.78 16 26 F -0.19 -4.52 14.29 44.97 0.64 -3.87 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.11 0.44 7.79 -2.39 -0.02 0.42 16 30 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.13 4.41 7.85 -2.91 -0.02 4.39 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.12 1.86 7.40 -2.38 -0.02 1.84 16 35 H 0.11 2.15 5.48 -2.38 -0.01 2.14 16 36 H 0.03 1.77 7.25 -2.39 -0.02 1.76 16 37 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 38 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.14 3.26 8.07 -2.39 -0.02 3.24 16 40 H 0.16 2.16 6.44 -2.39 -0.02 2.14 16 Total: -1.00 -83.70 357.64 6.72 -76.98 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.08 Total: 7.33 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 6.22 Total: 21.38 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -3.82 Total: -97.75 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -0.93 Total: -40.94 kcal Atomic # 9 Polarization: -14.48 SS G_CDS: 2.15 Total: -12.33 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -83.70 6.72 -76.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283307660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.369 kcal (2) G-P(sol) polarization free energy of solvation -83.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds