Wall clock time and date at job start Tue Mar 31 2020 18:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 120.00382 * 2 1 4 4 N 1.46898 * 109.47467 * 125.00102 * 3 2 1 5 5 C 1.46900 * 110.99437 * 288.18932 * 4 3 2 6 6 C 1.50704 * 109.46812 * 165.11689 * 5 4 3 7 7 H 1.07993 * 120.00147 * 4.65007 * 6 5 4 8 8 C 1.37879 * 120.00080 * 184.63753 * 6 5 4 9 9 N 1.31518 * 119.99782 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00200 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47060 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46846 * 120.00267 * 10 8 6 13 13 H 1.48496 * 109.47432 * 240.00653 * 10 8 6 14 14 C 1.39024 * 111.00052 * 164.24243 * 4 3 2 15 15 N 1.32344 * 119.64822 * 96.60553 * 14 4 3 16 16 C 1.31880 * 121.95807 * 179.97438 * 15 14 4 17 17 C 1.37987 * 121.00947 * 359.71127 * 16 15 14 18 18 C 1.40021 * 119.16586 * 0.55900 * 17 16 15 19 19 C 1.48063 * 120.89019 * 179.72563 * 18 17 16 20 20 O 1.21423 * 120.00373 * 179.71943 * 19 18 17 21 21 O 1.34672 * 119.99804 * 359.45127 * 19 18 17 22 22 C 1.45202 * 117.00052 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.47044 * 179.97438 * 22 21 19 24 24 C 1.39088 * 119.63898 * 276.57997 * 14 4 3 25 25 N 1.48022 * 120.53332 * 0.04866 * 24 14 4 26 26 O 1.21803 * 119.99442 * 264.37355 * 25 24 14 27 27 O 1.21792 * 120.00339 * 84.37865 * 25 24 14 28 28 H 1.08004 * 120.00382 * 180.02562 * 1 2 3 29 29 H 1.08009 * 120.00039 * 0.02562 * 1 2 3 30 30 H 1.08007 * 119.99777 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46909 * 4.99424 * 3 2 1 32 32 H 1.09004 * 109.46956 * 244.99977 * 3 2 1 33 33 H 1.08996 * 109.47467 * 285.11438 * 5 4 3 34 34 H 1.09007 * 109.47398 * 45.12160 * 5 4 3 35 35 H 0.96998 * 119.99597 * 179.97438 * 9 8 6 36 36 H 1.08006 * 119.49410 * 179.97438 * 16 15 14 37 37 H 1.08004 * 120.42236 * 180.29669 * 17 16 15 38 38 H 1.08994 * 109.46972 * 300.00168 * 22 21 19 39 39 H 1.09004 * 109.46379 * 59.99959 * 22 21 19 40 40 H 1.09003 * 109.46621 * 60.00596 * 23 22 21 41 41 H 1.08998 * 109.46736 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47415 * 300.00581 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2753 1.4848 2.4052 6 6 3.1963 1.1462 3.5491 7 1 4.2348 0.9205 3.3576 8 6 2.7129 1.1249 4.8402 9 7 1.4481 1.3996 5.0734 10 14 3.8546 0.7060 6.2581 11 1 5.2180 0.4392 5.7337 12 1 3.9042 1.8470 7.2073 13 1 3.3492 -0.5007 6.9607 14 6 3.9448 2.3359 0.9759 15 7 3.7616 3.5081 1.5625 16 6 4.6318 4.4919 1.4432 17 6 5.7834 4.3361 0.6992 18 6 6.0193 3.1158 0.0543 19 6 7.2393 2.9091 -0.7587 20 8 7.4302 1.8425 -1.3068 21 8 8.1347 3.9058 -0.8947 22 6 9.3077 3.6321 -1.7056 23 6 10.2020 4.8729 -1.7439 24 6 5.0763 2.0975 0.2030 25 7 5.2769 0.7852 -0.4517 26 8 5.9569 -0.0679 0.0899 27 8 4.7620 0.5584 -1.5320 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9354 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 1.9329 2.5145 2.5071 34 1 1.4168 0.8132 2.4190 35 1 1.1080 1.3843 5.9817 36 1 4.4421 5.4325 1.9389 37 1 6.4919 5.1466 0.6118 38 1 9.8611 2.7981 -1.2742 39 1 8.9972 3.3769 -2.7189 40 1 10.5124 5.1285 -0.7308 41 1 11.0827 4.6673 -2.3523 42 1 9.6483 5.7067 -2.1755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291926043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:55 Heat of formation + Delta-G solvation = -22.453691 kcal Electronic energy + Delta-G solvation = -29783.142522 eV Core-core repulsion = 25539.882029 eV Total energy + Delta-G solvation = -4243.260494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.47551 -42.07150 -41.45593 -38.79734 -38.09191 -37.57618 -35.18129 -34.70802 -34.35184 -32.77868 -31.87503 -29.54882 -28.25374 -26.95573 -26.17479 -24.86480 -23.79502 -23.47743 -22.20340 -20.84541 -20.51105 -19.90282 -19.59868 -19.17432 -18.55372 -18.22004 -17.95962 -17.32577 -17.10721 -16.85918 -16.34231 -15.93413 -15.71975 -15.36519 -15.06193 -14.87354 -14.55968 -14.33837 -14.13715 -13.70961 -13.59962 -13.18214 -13.14141 -12.83352 -12.76702 -12.67823 -12.63255 -12.44070 -12.34617 -12.31268 -12.23555 -12.10951 -11.79751 -11.65933 -11.49408 -11.21579 -10.91272 -10.62955 -10.37910 -9.57187 -8.26515 -6.34679 -1.21276 -0.60817 -0.53677 0.21305 0.94454 0.99269 1.26356 1.32849 1.35984 1.47667 2.15650 2.29711 2.43389 2.92879 3.05880 3.08109 3.29154 3.44361 3.67931 3.87618 3.92569 3.96042 3.98755 4.11172 4.24996 4.26565 4.43255 4.50514 4.63729 4.84766 4.88032 4.89957 4.95087 5.03458 5.11910 5.23186 5.26246 5.37399 5.61967 5.70726 5.83873 5.95014 6.12430 6.16750 6.44368 6.47037 6.72967 7.32003 8.84285 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.004328 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.392860 B = 6467.272801 C = 7659.021961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.162 4.162 3 C 0.087 3.913 4 N -0.508 5.508 5 C 0.217 3.783 6 C -0.521 4.521 7 H 0.036 0.964 8 C 0.020 3.980 9 N -0.919 5.919 10 Si 0.956 3.044 11 H -0.278 1.278 12 H -0.269 1.269 13 H -0.276 1.276 14 C 0.370 3.630 15 N -0.481 5.481 16 C 0.160 3.840 17 C -0.099 4.099 18 C -0.042 4.042 19 C 0.512 3.488 20 O -0.518 6.518 21 O -0.329 6.329 22 C 0.051 3.949 23 C -0.143 4.143 24 C -0.067 4.067 25 N 0.056 4.944 26 O -0.174 6.174 27 O -0.136 6.136 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.013 0.987 34 H 0.024 0.976 35 H 0.267 0.733 36 H 0.231 0.769 37 H 0.220 0.780 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.050 12.811 -12.526 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C -0.038 4.038 4 N -0.227 5.227 5 C 0.094 3.906 6 C -0.560 4.560 7 H 0.054 0.946 8 C -0.179 4.179 9 N -0.559 5.559 10 Si 0.781 3.219 11 H -0.203 1.203 12 H -0.194 1.194 13 H -0.201 1.201 14 C 0.140 3.860 15 N -0.195 5.195 16 C 0.000 4.000 17 C -0.119 4.119 18 C -0.053 4.053 19 C 0.356 3.644 20 O -0.408 6.408 21 O -0.244 6.244 22 C -0.022 4.022 23 C -0.200 4.200 24 C -0.154 4.154 25 N 0.584 4.416 26 O -0.390 6.390 27 O -0.364 6.364 28 H 0.138 0.862 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.247 0.753 37 H 0.237 0.763 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.391 12.789 -11.698 20.209 hybrid contribution 0.773 -0.864 0.223 1.181 sum 11.164 11.925 -11.475 19.963 Atomic orbital electron populations 1.24013 0.94871 1.03205 0.98055 1.22629 0.96377 0.97095 1.01922 1.21418 0.93705 0.97187 0.91450 1.59916 1.17581 1.38316 1.06922 1.19491 0.92856 0.96128 0.82174 1.21125 0.95382 1.47457 0.91999 0.94593 1.25582 0.96567 0.94906 1.00872 1.70030 1.14634 1.49532 1.21669 0.85543 0.78767 0.78387 0.79197 1.20294 1.19378 1.20131 1.19438 0.90620 0.88715 0.87217 1.68169 1.32968 0.99240 1.19118 1.24082 0.87123 0.98065 0.90755 1.23021 0.99712 0.95480 0.93732 1.19286 0.91534 0.94684 0.99755 1.20760 0.83140 0.82324 0.78216 1.90966 1.76610 1.27589 1.45617 1.86492 1.32149 1.39468 1.66327 1.23564 0.82769 1.01655 0.94177 1.21849 0.98561 0.95178 1.04418 1.21768 1.00153 0.85490 1.08007 1.42957 0.97312 1.01932 0.99371 1.94529 1.37274 1.40632 1.66602 1.94406 1.48592 1.85525 1.07858 0.86153 0.87718 0.87879 0.92449 0.89763 0.96912 0.95764 0.92394 0.75271 0.76348 0.91197 0.90770 0.90766 0.87868 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 14.32 67.79 0.97 -4.06 16 2 C -0.16 -5.90 8.76 25.65 0.22 -5.68 16 3 C 0.09 3.34 5.35 85.56 0.46 3.80 16 4 N -0.51 -23.21 4.12 -710.58 -2.92 -26.14 16 5 C 0.22 11.42 4.29 85.56 0.37 11.79 16 6 C -0.52 -29.98 8.79 25.60 0.22 -29.76 16 7 H 0.04 2.17 7.71 -2.91 -0.02 2.15 16 8 C 0.02 1.15 5.46 84.65 0.46 1.62 16 9 N -0.92 -53.59 13.29 21.45 0.28 -53.31 16 10 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 14 C 0.37 15.26 5.12 133.06 0.68 15.94 16 15 N -0.48 -17.53 8.59 -193.41 -1.66 -19.19 16 16 C 0.16 3.69 11.16 84.63 0.94 4.63 16 17 C -0.10 -1.96 9.70 22.64 0.22 -1.74 16 18 C -0.04 -1.27 5.90 -19.91 -0.12 -1.39 16 19 C 0.51 15.01 7.92 70.43 0.56 15.57 16 20 O -0.52 -19.10 14.45 24.99 0.36 -18.74 16 21 O -0.33 -6.79 9.57 -55.81 -0.53 -7.33 16 22 C 0.05 0.82 6.19 71.98 0.45 1.27 16 23 C -0.14 -1.19 10.29 71.98 0.74 -0.45 16 24 C -0.07 -2.63 6.02 36.90 0.22 -2.41 16 25 N 0.06 2.43 2.36 -45.20 -0.11 2.33 16 26 O -0.17 -8.34 18.70 23.29 0.44 -7.90 16 27 O -0.14 -5.80 17.82 19.32 0.34 -5.46 16 28 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.10 2.97 7.84 -2.91 -0.02 2.95 16 30 H 0.10 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.06 2.10 7.71 -2.39 -0.02 2.09 16 32 H 0.08 3.13 6.37 -2.39 -0.02 3.11 16 33 H 0.01 0.71 7.11 -2.39 -0.02 0.69 16 34 H 0.02 1.37 7.18 -2.38 -0.02 1.36 16 35 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.23 2.83 8.06 -2.91 -0.02 2.80 16 37 H 0.22 1.97 7.71 -2.91 -0.02 1.95 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 40 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -79.04 373.84 5.67 -73.37 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.05 Total: 6.34 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.40 Total: 9.13 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -4.41 Total: -96.31 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: 0.61 Total: -39.43 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -79.04 5.67 -73.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291926043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.917 kcal (2) G-P(sol) polarization free energy of solvation -79.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds