Wall clock time and date at job start Tue Mar 31 2020 18:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46841 * 2 1 4 4 C 1.34226 * 116.99777 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99994 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99829 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46821 * 15.00052 * 6 4 3 8 8 F 1.39902 * 109.46960 * 255.00254 * 6 4 3 9 9 C 1.53001 * 109.47107 * 135.00282 * 6 4 3 10 10 C 1.53494 * 114.20550 * 185.00239 * 9 6 4 11 11 N 1.47073 * 87.98205 * 220.34340 * 10 9 6 12 12 C 1.34778 * 136.05402 * 207.08849 * 11 10 9 13 13 O 1.21544 * 120.00095 * 5.56177 * 12 11 10 14 14 C 1.47891 * 119.99729 * 185.57274 * 12 11 10 15 15 C 1.39925 * 120.02636 * 6.87937 * 14 12 11 16 16 C 1.38329 * 120.35777 * 179.97438 * 15 14 12 17 17 C 1.37750 * 120.41385 * 0.02562 * 16 15 14 18 18 C 1.40752 * 120.03541 * 359.78686 * 17 16 15 19 19 C 1.41444 * 120.17143 * 180.22762 * 18 17 16 20 20 H 1.07999 * 119.99971 * 25.50305 * 19 18 17 21 21 C 1.39938 * 119.99537 * 205.49406 * 19 18 17 22 22 N 1.30821 * 120.00497 * 16.73050 * 21 19 18 23 23 Si 1.86804 * 119.99600 * 196.72734 * 21 19 18 24 24 H 1.48495 * 109.47117 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46901 * 120.00148 * 23 21 19 26 26 H 1.48498 * 109.46864 * 239.99982 * 23 21 19 27 27 C 1.38991 * 120.02485 * 186.86993 * 14 12 11 28 28 C 1.47065 * 87.88336 * 27.34054 * 11 10 9 29 29 H 1.08998 * 109.47460 * 299.99754 * 1 2 3 30 30 H 1.08998 * 109.46917 * 60.00639 * 1 2 3 31 31 H 1.09007 * 109.46880 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47581 * 239.99800 * 2 1 3 33 33 H 1.09007 * 109.46759 * 119.99295 * 2 1 3 34 34 H 1.09008 * 113.40858 * 318.20272 * 9 6 4 35 35 H 1.08994 * 113.46582 * 105.56513 * 10 9 6 36 36 H 1.08997 * 113.52114 * 335.13176 * 10 9 6 37 37 H 1.08004 * 119.81838 * 359.97438 * 15 14 12 38 38 H 1.08005 * 119.79012 * 180.02562 * 16 15 14 39 39 H 1.08003 * 119.97962 * 180.02562 * 17 16 15 40 40 H 0.97000 * 120.00394 * 180.02562 * 22 21 19 41 41 H 1.07994 * 120.20492 * 359.97438 * 27 14 12 42 42 H 1.08998 * 113.46857 * 87.44140 * 28 11 10 43 43 H 1.09001 * 113.46587 * 217.87740 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.1421 3.6528 0.2652 8 9 4.4149 3.2372 -1.2740 9 6 5.0577 3.0196 1.0204 10 6 5.6445 4.4269 1.1971 11 7 6.9765 3.8067 1.2629 12 6 8.1623 4.1120 1.8261 13 8 8.2586 5.0826 2.5514 14 6 9.3462 3.2662 1.5614 15 6 9.2739 2.2365 0.6168 16 6 10.3772 1.4415 0.3634 17 6 11.5593 1.6537 1.0380 18 6 11.6521 2.6873 1.9889 19 6 12.8659 2.9108 2.6798 20 1 13.8035 2.6117 2.2350 21 6 12.8519 3.5196 3.9397 22 7 11.7376 3.5860 4.6219 23 14 14.4245 4.2375 4.6476 24 1 15.5376 4.0356 3.6857 25 1 14.2393 5.6907 4.8916 26 1 14.7465 3.5577 5.9279 27 6 10.5315 3.4936 2.2507 28 6 6.4467 2.7102 0.4384 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.8373 2.5064 1.9566 35 1 5.3437 4.9090 2.1272 36 1 5.5068 5.0680 0.3264 37 1 8.3517 2.0614 0.0826 38 1 10.3114 0.6495 -0.3679 39 1 12.4166 1.0290 0.8344 40 1 11.7278 4.0084 5.4950 41 1 10.5921 4.2876 2.9802 42 1 6.5201 2.8979 -0.6327 43 1 6.8294 1.7298 0.7222 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294333316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:03 Heat of formation + Delta-G solvation = -103.287776 kcal Electronic energy + Delta-G solvation = -28186.247563 eV Core-core repulsion = 23919.561878 eV Total energy + Delta-G solvation = -4266.685684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.43533 -40.85184 -40.09276 -37.87295 -37.06287 -36.65880 -33.71903 -32.43301 -31.50214 -30.14564 -29.42566 -27.59435 -26.30047 -25.08315 -24.00480 -22.65836 -21.50021 -20.94167 -20.43171 -18.88065 -18.59453 -17.64565 -17.46389 -17.17956 -16.60038 -16.17787 -15.84211 -15.57182 -14.82572 -14.70337 -14.57180 -14.35794 -14.10316 -13.53342 -13.41078 -13.28925 -13.15844 -13.05720 -12.61120 -12.54917 -12.41177 -12.35999 -12.19558 -12.03895 -11.64049 -11.51020 -11.16239 -11.14553 -11.00066 -10.97928 -10.70794 -10.51228 -10.30263 -10.00691 -9.61068 -9.21046 -9.04941 -8.42816 -7.61603 -7.48849 -6.77645 -4.39737 1.60483 1.97068 2.19534 2.81981 3.09093 3.09943 3.14270 3.16417 3.77066 3.80903 3.93629 3.98348 4.15410 4.31749 4.49072 4.52297 4.60307 4.67187 4.82845 4.84582 5.14751 5.20092 5.26496 5.32672 5.41587 5.51116 5.58382 5.61355 5.71129 5.92799 5.99394 6.05081 6.25964 6.36842 6.75326 7.00647 7.05197 7.20240 7.23262 7.39755 7.71646 7.82542 7.94051 8.11253 8.18812 8.51883 8.81221 8.83931 8.88492 10.17431 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022916 B = 0.002358 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.568622 B =11871.808058 C =12230.715714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.442 3.558 5 O -0.474 6.474 6 C 0.126 3.874 7 H 0.125 0.875 8 F -0.176 7.176 9 C -0.157 4.157 10 C 0.116 3.884 11 N -0.647 5.647 12 C 0.598 3.402 13 O -0.541 6.541 14 C -0.125 4.125 15 C -0.222 4.222 16 C -0.100 4.100 17 C -0.208 4.208 18 C 0.097 3.903 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.787 5.787 23 Si 0.910 3.090 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.091 4.091 28 C 0.114 3.886 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.283 0.717 41 H 0.134 0.866 42 H 0.094 0.906 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.062 -3.501 -7.544 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.270 6.270 4 C 0.281 3.719 5 O -0.359 6.359 6 C 0.088 3.912 7 H 0.142 0.858 8 F -0.156 7.156 9 C -0.177 4.177 10 C -0.007 4.007 11 N -0.384 5.384 12 C 0.392 3.608 13 O -0.419 6.419 14 C -0.128 4.128 15 C -0.242 4.242 16 C -0.119 4.119 17 C -0.228 4.228 18 C 0.095 3.905 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.146 4.146 22 N -0.412 5.412 23 Si 0.734 3.266 24 H -0.184 1.184 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.111 4.111 28 C -0.009 4.009 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.151 0.849 42 H 0.112 0.888 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.634 -3.156 -6.825 21.961 hybrid contribution 0.601 0.005 0.228 0.643 sum -20.033 -3.151 -6.597 21.325 Atomic orbital electron populations 1.21822 0.92299 1.03215 1.03668 1.23140 0.95587 0.79577 1.03079 1.86508 1.23817 1.33176 1.83521 1.23996 0.81295 0.92775 0.73851 1.90746 1.60321 1.42540 1.42278 1.20921 0.97133 0.92003 0.81139 0.85777 1.92921 1.89029 1.93439 1.40260 1.23743 0.93607 1.00845 0.99462 1.22813 0.81442 0.93598 1.02849 1.49328 1.09757 1.25841 1.53441 1.18489 0.80496 0.84034 0.77740 1.90707 1.83824 1.29756 1.37608 1.19374 0.93072 0.98687 1.01698 1.20843 0.98685 1.00748 1.03921 1.20474 0.93724 0.98522 0.99149 1.21138 0.97052 1.00573 1.03994 1.17599 0.92930 0.89247 0.90751 1.19601 0.93947 1.34525 1.00867 0.90051 1.25959 0.97912 0.93826 0.96899 1.69789 1.27970 1.32111 1.11348 0.86228 0.81848 0.79381 0.79099 1.18352 1.19588 1.19946 1.21626 0.90971 0.99581 0.98916 1.23082 0.87748 0.93528 0.96558 0.91309 0.91360 0.90009 0.90862 0.90767 0.85548 0.89713 0.89501 0.87923 0.88859 0.88583 0.90568 0.84870 0.88830 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.29 37.16 0.38 -0.29 16 2 C 0.06 0.41 6.19 37.16 0.23 0.64 16 3 O -0.35 -3.07 10.22 -39.25 -0.40 -3.47 16 4 C 0.44 4.47 7.28 36.01 0.26 4.73 16 5 O -0.47 -6.22 16.41 -18.75 -0.31 -6.52 16 6 C 0.13 1.08 3.88 -27.88 -0.11 0.97 16 7 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 8 F -0.18 -1.81 15.53 2.25 0.03 -1.78 16 9 C -0.16 -1.67 3.65 -89.98 -0.33 -2.00 16 10 C 0.12 1.44 8.15 -8.51 -0.07 1.37 16 11 N -0.65 -11.36 3.67 -186.17 -0.68 -12.05 16 12 C 0.60 13.76 8.01 -12.31 -0.10 13.66 16 13 O -0.54 -14.09 17.13 5.33 0.09 -14.00 16 14 C -0.13 -3.08 5.87 -105.03 -0.62 -3.70 16 15 C -0.22 -4.91 9.15 -38.92 -0.36 -5.27 16 16 C -0.10 -2.22 10.01 -39.73 -0.40 -2.62 16 17 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 18 C 0.10 2.63 5.57 -106.87 -0.59 2.03 16 19 C -0.46 -12.30 9.05 -37.73 -0.34 -12.64 16 20 H 0.08 2.07 7.90 -52.49 -0.41 1.65 16 21 C 0.07 1.86 5.16 -17.35 -0.09 1.78 16 22 N -0.79 -21.19 10.95 55.55 0.61 -20.58 16 23 Si 0.91 19.08 29.59 -169.99 -5.03 14.05 16 24 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 27 C -0.09 -2.49 8.23 -38.45 -0.32 -2.80 16 28 C 0.11 1.61 5.53 -8.38 -0.05 1.57 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.07 0.51 8.13 -51.92 -0.42 0.09 16 34 H 0.13 1.28 8.12 -51.92 -0.42 0.86 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.10 1.95 4.16 -52.48 -0.22 1.73 16 38 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 39 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 40 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 41 H 0.13 3.93 5.78 -52.49 -0.30 3.63 16 42 H 0.09 1.25 6.95 -51.93 -0.36 0.89 16 43 H 0.10 1.46 6.75 -51.93 -0.35 1.11 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -33.12 369.74 -8.41 -41.53 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.43 Total: 5.25 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.87 Total: -8.01 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: -0.07 Total: -32.62 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.62 Total: -23.99 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.03 Total: -1.78 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.12 -8.41 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294333316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.758 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds