Wall clock time and date at job start Tue Mar 31 2020 18:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46841 * 2 1 4 4 C 1.34226 * 116.99777 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99994 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99829 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46821 * 15.00052 * 6 4 3 8 8 F 1.39902 * 109.46960 * 255.00254 * 6 4 3 9 9 C 1.53001 * 109.47107 * 135.00282 * 6 4 3 10 10 C 1.53494 * 114.20550 * 185.00239 * 9 6 4 11 11 N 1.47073 * 87.98205 * 220.34340 * 10 9 6 12 12 C 1.34778 * 136.05402 * 207.08849 * 11 10 9 13 13 O 1.21544 * 120.00095 * 5.56177 * 12 11 10 14 14 C 1.47891 * 119.99729 * 185.57274 * 12 11 10 15 15 C 1.39925 * 120.02636 * 6.87937 * 14 12 11 16 16 C 1.38329 * 120.35777 * 179.97438 * 15 14 12 17 17 C 1.37750 * 120.41385 * 0.02562 * 16 15 14 18 18 C 1.40752 * 120.03541 * 359.78686 * 17 16 15 19 19 C 1.41444 * 120.17143 * 180.22762 * 18 17 16 20 20 H 1.07999 * 119.99971 * 25.50305 * 19 18 17 21 21 C 1.39938 * 119.99537 * 205.49406 * 19 18 17 22 22 N 1.30821 * 120.00497 * 16.73050 * 21 19 18 23 23 Si 1.86804 * 119.99600 * 196.72734 * 21 19 18 24 24 H 1.48495 * 109.47117 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46901 * 120.00148 * 23 21 19 26 26 H 1.48498 * 109.46864 * 239.99982 * 23 21 19 27 27 C 1.38991 * 120.02485 * 186.86993 * 14 12 11 28 28 C 1.47065 * 87.88336 * 27.34054 * 11 10 9 29 29 H 1.08998 * 109.47460 * 299.99754 * 1 2 3 30 30 H 1.08998 * 109.46917 * 60.00639 * 1 2 3 31 31 H 1.09007 * 109.46880 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47581 * 239.99800 * 2 1 3 33 33 H 1.09007 * 109.46759 * 119.99295 * 2 1 3 34 34 H 1.09008 * 113.40858 * 318.20272 * 9 6 4 35 35 H 1.08994 * 113.46582 * 105.56513 * 10 9 6 36 36 H 1.08997 * 113.52114 * 335.13176 * 10 9 6 37 37 H 1.08004 * 119.81838 * 359.97438 * 15 14 12 38 38 H 1.08005 * 119.79012 * 180.02562 * 16 15 14 39 39 H 1.08003 * 119.97962 * 180.02562 * 17 16 15 40 40 H 0.97000 * 120.00394 * 180.02562 * 22 21 19 41 41 H 1.07994 * 120.20492 * 359.97438 * 27 14 12 42 42 H 1.08998 * 113.46857 * 87.44140 * 28 11 10 43 43 H 1.09001 * 113.46587 * 217.87740 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.1421 3.6528 0.2652 8 9 4.4149 3.2372 -1.2740 9 6 5.0577 3.0196 1.0204 10 6 5.6445 4.4269 1.1971 11 7 6.9765 3.8067 1.2629 12 6 8.1623 4.1120 1.8261 13 8 8.2586 5.0826 2.5514 14 6 9.3462 3.2662 1.5614 15 6 9.2739 2.2365 0.6168 16 6 10.3772 1.4415 0.3634 17 6 11.5593 1.6537 1.0380 18 6 11.6521 2.6873 1.9889 19 6 12.8659 2.9108 2.6798 20 1 13.8035 2.6117 2.2350 21 6 12.8519 3.5196 3.9397 22 7 11.7376 3.5860 4.6219 23 14 14.4245 4.2375 4.6476 24 1 15.5376 4.0356 3.6857 25 1 14.2393 5.6907 4.8916 26 1 14.7465 3.5577 5.9279 27 6 10.5315 3.4936 2.2507 28 6 6.4467 2.7102 0.4384 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.8373 2.5064 1.9566 35 1 5.3437 4.9090 2.1272 36 1 5.5068 5.0680 0.3264 37 1 8.3517 2.0614 0.0826 38 1 10.3114 0.6495 -0.3679 39 1 12.4166 1.0290 0.8344 40 1 11.7278 4.0084 5.4950 41 1 10.5921 4.2876 2.9802 42 1 6.5201 2.8979 -0.6327 43 1 6.8294 1.7298 0.7222 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294333316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:02 Heat of formation + Delta-G solvation = -122.779193 kcal Electronic energy + Delta-G solvation = -28187.092774 eV Core-core repulsion = 23919.561878 eV Total energy + Delta-G solvation = -4267.530896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.19115 -41.75731 -41.33896 -39.50590 -38.50953 -37.80058 -35.62827 -33.21886 -32.59027 -31.69494 -31.31190 -28.79783 -27.68351 -26.77317 -24.88144 -23.77564 -22.82531 -22.58075 -21.49584 -20.40057 -19.34808 -19.33616 -18.31106 -18.04808 -17.68541 -17.55408 -17.23468 -16.81617 -16.47331 -16.40158 -15.68917 -15.25296 -15.08817 -15.04631 -14.95358 -14.60534 -14.34136 -14.08582 -13.85720 -13.76313 -13.59726 -13.45660 -13.29470 -12.98858 -12.94543 -12.81773 -12.61766 -12.52684 -12.35880 -12.26512 -11.91738 -11.90849 -11.56274 -11.51088 -11.27103 -11.10820 -10.79744 -9.90290 -9.48788 -9.41308 -8.68391 -6.41372 0.31603 0.82562 0.96284 1.27876 1.35163 1.44703 1.51996 1.76130 2.01737 2.17939 2.74271 2.88839 3.13925 3.45374 3.49776 3.61601 3.66326 3.86955 4.01562 4.03849 4.06710 4.31919 4.33619 4.36606 4.42798 4.48322 4.54051 4.63460 4.72700 4.80705 4.92623 4.94932 5.02431 5.06837 5.11793 5.16946 5.30232 5.37036 5.48206 5.82366 5.91063 6.01294 6.24933 6.46177 6.49109 6.60123 6.84927 6.90558 7.15069 8.29067 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022916 B = 0.002358 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.568622 B =11871.808058 C =12230.715714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.349 6.349 4 C 0.445 3.555 5 O -0.510 6.510 6 C 0.134 3.866 7 H 0.171 0.829 8 F -0.183 7.183 9 C -0.132 4.132 10 C 0.114 3.886 11 N -0.650 5.650 12 C 0.589 3.411 13 O -0.588 6.588 14 C -0.137 4.137 15 C -0.208 4.208 16 C -0.098 4.098 17 C -0.213 4.213 18 C 0.066 3.934 19 C -0.495 4.495 20 H 0.085 0.915 21 C 0.027 3.973 22 N -0.828 5.828 23 Si 0.986 3.014 24 H -0.251 1.251 25 H -0.270 1.270 26 H -0.263 1.263 27 C -0.129 4.129 28 C 0.101 3.899 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.133 0.867 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.287 0.713 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.241 -4.173 -9.093 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.285 3.715 5 O -0.397 6.397 6 C 0.096 3.904 7 H 0.188 0.812 8 F -0.163 7.163 9 C -0.151 4.151 10 C -0.007 4.007 11 N -0.385 5.385 12 C 0.383 3.617 13 O -0.470 6.470 14 C -0.140 4.140 15 C -0.227 4.227 16 C -0.116 4.116 17 C -0.233 4.233 18 C 0.064 3.936 19 C -0.525 4.525 20 H 0.103 0.897 21 C -0.187 4.187 22 N -0.454 5.454 23 Si 0.806 3.194 24 H -0.174 1.174 25 H -0.195 1.195 26 H -0.188 1.188 27 C -0.149 4.149 28 C -0.021 4.021 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.889 -3.861 -8.424 24.694 hybrid contribution 1.041 0.083 0.551 1.180 sum -21.848 -3.778 -7.873 23.529 Atomic orbital electron populations 1.21839 0.90230 1.04424 1.03949 1.23386 0.97212 0.78741 1.02884 1.86511 1.22932 1.34214 1.82898 1.24258 0.81541 0.92895 0.72773 1.90741 1.61120 1.43830 1.44046 1.21024 0.97055 0.92367 0.79911 0.81184 1.92913 1.89180 1.93427 1.40817 1.23524 0.92518 0.98955 1.00149 1.23177 0.78150 0.94975 1.04433 1.49311 1.09640 1.27421 1.52092 1.18251 0.81849 0.83395 0.78197 1.90664 1.84941 1.31488 1.39874 1.19725 0.93216 0.99502 1.01592 1.21286 1.00109 0.98937 1.02396 1.20940 0.92566 0.99066 0.99066 1.21431 0.98630 0.99918 1.03315 1.17967 0.93274 0.90306 0.92048 1.19883 0.94152 1.36555 1.01889 0.89666 1.26902 1.01390 0.93548 0.96907 1.69890 1.30354 1.33261 1.11886 0.85106 0.77433 0.78248 0.78607 1.17387 1.19507 1.18753 1.21430 0.92939 1.00173 1.00398 1.23363 0.89689 0.91935 0.97071 0.90987 0.91065 0.88372 0.91152 0.90994 0.84870 0.89049 0.86916 0.84460 0.84571 0.87106 0.90272 0.88239 0.87333 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 71.98 0.74 -0.20 16 2 C 0.05 0.61 6.19 71.98 0.45 1.05 16 3 O -0.35 -5.10 10.22 -51.38 -0.53 -5.62 16 4 C 0.44 7.76 7.28 71.24 0.52 8.28 16 5 O -0.51 -12.42 16.41 21.98 0.36 -12.06 16 6 C 0.13 1.78 3.88 29.85 0.12 1.89 16 7 H 0.17 0.82 8.14 -2.39 -0.02 0.80 16 8 F -0.18 -3.08 15.53 44.97 0.70 -2.38 16 9 C -0.13 -2.41 3.65 -10.38 -0.04 -2.45 16 10 C 0.11 2.53 8.15 83.18 0.68 3.21 16 11 N -0.65 -22.15 3.67 -861.20 -3.16 -25.31 16 12 C 0.59 27.81 8.01 86.80 0.69 28.50 16 13 O -0.59 -32.08 17.13 -3.85 -0.07 -32.15 16 14 C -0.14 -6.95 5.87 -20.13 -0.12 -7.07 16 15 C -0.21 -8.97 9.15 22.70 0.21 -8.77 16 16 C -0.10 -4.19 10.01 22.18 0.22 -3.97 16 17 C -0.21 -10.41 9.78 22.77 0.22 -10.18 16 18 C 0.07 3.74 5.57 -21.32 -0.12 3.62 16 19 C -0.50 -27.66 9.05 23.47 0.21 -27.45 16 20 H 0.09 4.48 7.90 -2.91 -0.02 4.46 16 21 C 0.03 1.44 5.16 85.26 0.44 1.88 16 22 N -0.83 -47.20 10.95 21.82 0.24 -46.96 16 23 Si 0.99 40.43 29.59 68.60 2.03 42.46 16 24 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 27 C -0.13 -7.47 8.23 23.01 0.19 -7.28 16 28 C 0.10 2.63 5.53 83.26 0.46 3.10 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 32 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 33 H 0.07 0.89 8.13 -2.38 -0.02 0.87 16 34 H 0.13 2.33 8.12 -2.38 -0.02 2.31 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.11 2.00 8.09 -2.39 -0.02 1.98 16 37 H 0.14 4.89 4.16 -2.91 -0.01 4.88 16 38 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 40 H 0.29 14.96 8.30 -92.71 -0.77 14.19 16 41 H 0.10 6.37 5.78 -2.91 -0.02 6.36 16 42 H 0.11 2.56 6.95 -2.39 -0.02 2.54 16 43 H 0.08 2.42 6.75 -2.39 -0.02 2.40 16 Total: -1.00 -77.89 369.74 5.50 -72.39 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 1.05 Total: 25.46 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.87 Total: -15.83 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -2.92 Total: -72.27 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.23 Total: -49.83 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.70 Total: -2.38 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -77.89 5.50 -72.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294333316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.386 kcal (2) G-P(sol) polarization free energy of solvation -77.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds